1 c4hecB_ 
 
100.0 
100 
PDB header: unknown functionChain:  B: PDB Molecule: putative uncharacterized protein;PDBTitle:  crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
2 c5cy4C_ 
 
99.6 
16 
PDB header: oxidoreductaseChain:  C: PDB Molecule: oligoribonuclease;PDBTitle:  crystal structure of an oligoribonuclease from acinetobacter baumannii
3 d2igia1 
 
99.6 
14 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
4 d2f96a1 
 
99.6 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
5 c2gbzA_ 
 
99.6 
16 
PDB header: hydrolaseChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
6 c2p1jB_ 
 
99.6 
19 
PDB header: transferaseChain:  B: PDB Molecule: dna polymerase iii polc-type;PDBTitle:  crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
7 c6n6jB_ 
 
99.5 
14 
PDB header: rna binding protein/rnaChain:  B: PDB Molecule: rna exonuclease 2 homolog,small fragment nuclease;PDBTitle:  human rexo2 bound to paa
8 c3tr8A_ 
 
99.5 
14 
PDB header: hydrolaseChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  structure of an oligoribonuclease (orn) from coxiella burnetii
9 c6n6dA_ 
 
99.5 
12 
PDB header: rna binding protein/rnaChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  vibrio cholerae oligoribonuclease bound to pag
10 c5z9xA_ 
 
99.5 
16 
PDB header: plant protein/rnaChain:  A: PDB Molecule: small rna degrading nuclease 1;PDBTitle:  arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
11 d1wlja_ 
 
99.5 
18 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
12 d1j9aa_ 
 
99.5 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
13 d1y97a1 
 
99.5 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
14 c6a4dA_ 
 
99.5 
10 
PDB header: hydrolaseChain:  A: PDB Molecule: oligoribonuclease;PDBTitle:  pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
15 d3b6oa1 
 
99.5 
15 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
16 d2qxfa1 
 
99.4 
10 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
17 c4fzxC_ 
 
99.4 
18 
PDB header: hydrolase/dnaChain:  C: PDB Molecule: exodeoxyribonuclease 10;PDBTitle:  exonuclease x in complex with 3' overhanging duplex dna
18 d2guia1 
 
99.4 
19 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
19 c4wbqA_ 
 
99.4 
17 
PDB header: rna binding proteinChain:  A: PDB Molecule: qde-2-interacting protein;PDBTitle:  crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
20 c4rg8A_ 
 
99.4 
16 
PDB header: hydrolaseChain:  A: PDB Molecule: exonuclease i;PDBTitle:  structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
21 c3u6fA_ 
 
not modelled 
99.4 
18 
PDB header: hydrolase/dnaChain:  A: PDB Molecule: three prime repair exonuclease 1;PDBTitle:  mouse trex1 d200n mutant
22 d1w0ha_ 
 
not modelled 
99.4 
10 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
23 c5fkvD_ 
 
not modelled 
99.4 
18 
PDB header: transferaseChain:  D: PDB Molecule: dna polymerase iii epsilon;PDBTitle:  cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
24 c2xriA_ 
 
not modelled 
99.3 
13 
PDB header: hydrolaseChain:  A: PDB Molecule: eri1 exoribonuclease 3;PDBTitle:  crystal structure of human eri1 exoribonuclease 3
25 c3cm6A_ 
 
not modelled 
99.1 
15 
PDB header: hydrolase, apoptosisChain:  A: PDB Molecule: cell death-related nuclease 4;PDBTitle:  crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
26 c1zbhA_ 
 
not modelled 
99.1 
12 
PDB header: hydrolase/rnaChain:  A: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle:  3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
27 c1zbuB_ 
 
not modelled 
99.1 
13 
PDB header: hydrolaseChain:  B: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle:  crystal structure of full-length 3'-exonuclease
28 c2is3B_ 
 
not modelled 
99.0 
13 
PDB header: hydrolaseChain:  B: PDB Molecule: ribonuclease t;PDBTitle:  crystal structure of escherichia coli rnase t
29 c5l80B_ 
 
not modelled 
98.7 
11 
PDB header: rna binding proteinChain:  B: PDB Molecule: maternal protein exuperantia,maternal protein exuperantia;PDBTitle:  structure of exuperantia exo-like and sam-like domains
30 d1uoca_ 
 
not modelled 
98.1 
18 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease
31 d2d5ra1 
 
not modelled 
97.7 
17 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease
32 c2p51A_ 
 
not modelled 
97.6 
19 
PDB header: hydrolase, gene regulationChain:  A: PDB Molecule: spcc18.06c protein;PDBTitle:  crystal structure of the s. pombe pop2p deadenylation subunit
33 c4czwA_ 
 
not modelled 
97.3 
13 
PDB header: gene regulationChain:  A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle:  structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
34 c4gmjB_ 
 
not modelled 
97.2 
17 
PDB header: rna binding proteinChain:  B: PDB Molecule: ccr4-not transcription complex subunit 7;PDBTitle:  structure of human not1 mif4g domain co-crystallized with caf1
35 d1kfsa1 
 
not modelled 
97.1 
17 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
36 c2kzzA_ 
 
not modelled 
96.9 
21 
PDB header: transferase/dnaChain:  A: PDB Molecule: protein (dna polymerase i);PDBTitle:  klenow fragment with normal substrate and zinc only
37 c1njzA_ 
 
not modelled 
96.2 
27 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase i;PDBTitle:  cytosine-thymine mismatch at the polymerase active site
38 d1x9ma1 
 
not modelled 
96.2 
14 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
39 c4x0pB_ 
 
not modelled 
95.9 
13 
PDB header: transferase/dnaChain:  B: PDB Molecule: dna polymerase theta;PDBTitle:  ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
40 c5dkuB_ 
 
not modelled 
93.9 
10 
PDB header: transferaseChain:  B: PDB Molecule: prex dna polymerase;PDBTitle:  c-terminal his tagged appol exonuclease mutant
41 c5zo4B_ 
 
not modelled 
92.5 
20 
PDB header: hydrolaseChain:  B: PDB Molecule: putative 3'-5' exonuclease family protein;PDBTitle:  inactive state of the nuclease
42 d2hhva1 
 
not modelled 
91.2 
25 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
43 c4xviA_ 
 
not modelled 
91.2 
9 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase nu;PDBTitle:  binary complex of human polymerase nu and dna with the finger domain2 ajar
44 c1tk0A_ 
 
not modelled 
88.9 
19 
PDB header: transferase/electron transport/dnaChain:  A: PDB Molecule: dna polymerase;PDBTitle:  t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
45 c4q8jA_ 
 
not modelled 
87.7 
13 
PDB header: hydrolaseChain:  A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle:  structure of the saccharomyces cerevisiae pan2-pan3 core complex
46 d2ajta1 
 
not modelled 
86.5 
20 
Fold: Reductase/isomerase/elongation factor common domainSuperfamily: FucI/AraA C-terminal domain-likeFamily: AraA C-terminal domain-like
47 c1yt3A_ 
 
not modelled 
85.3 
20 
PDB header: hydrolase,translationChain:  A: PDB Molecule: ribonuclease d;PDBTitle:  crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
48 d1s5ja1 
 
not modelled 
83.7 
21 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
49 c2e6mA_ 
 
not modelled 
79.0 
15 
PDB header: hydrolaseChain:  A: PDB Molecule: werner syndrome atp-dependent helicase homolog;PDBTitle:  structure of mouse werner exonuclease domain
50 c6k1dB_ 
 
not modelled 
72.8 
21 
PDB header: hydrolaseChain:  B: PDB Molecule: exonuclease 3'-5' domain-containing protein 2;PDBTitle:  crystal structure of exd2 exonuclease domain soaked in mn and gmp
51 c1s5jA_ 
 
not modelled 
68.1 
18 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase i;PDBTitle:  insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
52 c1d5aA_ 
 
not modelled 
67.8 
17 
PDB header: transferaseChain:  A: PDB Molecule: protein (dna polymerase);PDBTitle:  crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
53 d2g3ra2 
 
not modelled 
60.0 
33 
Fold: SH3-like barrelSuperfamily: Tudor/PWWP/MBTFamily: Tudor domain
54 d1ih7a1 
 
not modelled 
57.0 
12 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
55 c4r1oF_ 
 
not modelled 
56.9 
21 
PDB header: isomeraseChain:  F: PDB Molecule: l-arabinose isomerase;PDBTitle:  crystal structure of thermophilic geobacillus kaustophilus l-arabinose2 isomerase
56 c2hxgB_ 
 
not modelled 
55.7 
20 
PDB header: isomeraseChain:  B: PDB Molecule: l-arabinose isomerase;PDBTitle:  crystal structure of mn2+ bound ecai
57 d1noya_ 
 
not modelled 
51.0 
12 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
58 c5c0xK_ 
 
not modelled 
50.8 
11 
PDB header: hydrolase/rnaChain:  K: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle:  structure of a 12-subunit nuclear exosome complex bound to structured2 rna
59 d1yt3a3 
 
not modelled 
50.5 
21 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
60 d1tgoa1 
 
not modelled 
42.6 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
61 d1d5aa1 
 
not modelled 
39.9 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
62 c3d45B_ 
 
not modelled 
34.8 
13 
PDB header: hydrolaseChain:  B: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle:  crystal structure of mouse parn in complex with m7gpppg
63 c4oo1J_ 
 
not modelled 
34.4 
18 
PDB header: hydrolase/rnaChain:  J: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle:  structure of an rrp6-rna exosome complex bound to poly(a) rna
64 d1wn7a1 
 
not modelled 
31.1 
18 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
65 c2gv9A_ 
 
not modelled 
28.9 
11 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase;PDBTitle:  crystal structure of the herpes simplex virus type 1 dna polymerase
66 d1qhta1 
 
not modelled 
26.2 
16 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
67 d1kkoa2 
 
not modelled 
24.9 
16 
Fold: Enolase N-terminal domain-likeSuperfamily: Enolase N-terminal domain-likeFamily: Enolase N-terminal domain-like
68 d2hbka2 
 
not modelled 
21.9 
20 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
69 d1q8ia1 
 
not modelled 
20.6 
25 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
70 c3r8rJ_ 
 
not modelled 
17.5 
43 
PDB header: transferaseChain:  J: PDB Molecule: transaldolase;PDBTitle:  transaldolase from bacillus subtilis
71 d1l6wa_ 
 
not modelled 
16.2 
29 
Fold: TIM beta/alpha-barrelSuperfamily: AldolaseFamily: Class I aldolase
72 d2fe1a1 
 
not modelled 
15.8 
14 
Fold: PIN domain-likeSuperfamily: PIN domain-likeFamily: PIN domain
73 c2fe1A_ 
 
not modelled 
15.8 
14 
PDB header: structural genomics, unknown functionChain:  A: PDB Molecule: conserved hypothetical protein pae0151;PDBTitle:  crystal structure of pae0151 from pyrobaculum aerophilum
74 c2gv9B_ 
 
not modelled 
15.4 
13 
PDB header: transferaseChain:  B: PDB Molecule: dna polymerase;PDBTitle:  crystal structure of the herpes simplex virus type 1 dna polymerase
75 d1vpxa_ 
 
not modelled 
14.8 
43 
Fold: TIM beta/alpha-barrelSuperfamily: AldolaseFamily: Class I aldolase
76 c2m7oA_ 
 
not modelled 
13.9 
35 
PDB header: structural genomics, unknown functionChain:  A: PDB Molecule: uncharacterized protein;PDBTitle:  nmr structure of the protein np_346341.1 from streptococcus pneumoniae
77 c3iayA_ 
 
not modelled 
13.5 
18 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle:  ternary complex of dna polymerase delta
78 d1wx0a1 
 
not modelled 
12.8 
29 
Fold: TIM beta/alpha-barrelSuperfamily: AldolaseFamily: Class I aldolase
79 d1kcza2 
 
not modelled 
12.7 
19 
Fold: Enolase N-terminal domain-likeSuperfamily: Enolase N-terminal domain-likeFamily: Enolase N-terminal domain-like
80 c6nklA_ 
 
not modelled 
11.9 
43 
PDB header: antitoxinChain:  A: PDB Molecule: ribonuclease vapc;PDBTitle:  2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
81 c3s1vD_ 
 
not modelled 
11.8 
43 
PDB header: transferaseChain:  D: PDB Molecule: probable transaldolase;PDBTitle:  transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate
82 c3zvkC_ 
 
not modelled 
11.7 
29 
PDB header: antitoxin/toxin/dnaChain:  C: PDB Molecule: toxin of toxin-antitoxin system;PDBTitle:  crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
83 c2jz7A_ 
 
not modelled 
11.6 
17 
PDB header: selenium-binding proteinChain:  A: PDB Molecule: selenium binding protein;PDBTitle:  solution nmr structure of selenium-binding protein from2 methanococcus vannielii
84 c6s7qG_ 
 
not modelled 
11.5 
16 
PDB header: lyaseChain:  G: PDB Molecule: ergothionase;PDBTitle:  crystal structure of ergothioneine degrading enzyme ergothionase from2 treponema denticola in complex with desmethyl-ergothioneine sulfonic3 acid
85 c2dtuA_ 
 
not modelled 
11.4 
13 
PDB header: transferase/dnaChain:  A: PDB Molecule: dna polymerase;PDBTitle:  crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
86 c3bsuF_ 
 
not modelled 
11.1 
13 
PDB header: hydrolase/rna/dnaChain:  F: PDB Molecule: ribonuclease h1;PDBTitle:  hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna
87 c2vwkA_ 
 
not modelled 
10.8 
18 
PDB header: dna replicationChain:  A: PDB Molecule: dna polymerase;PDBTitle:  uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
88 d2py5a1 
 
not modelled 
9.6 
13 
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
89 d2dsya1 
 
not modelled 
9.3 
26 
Fold: TTHA1013/TTHA0281-likeSuperfamily: TTHA1013/TTHA0281-likeFamily: TTHA0281-like
90 d1e3ha6 
 
not modelled 
9.2 
32 
Fold: Ribonuclease PH domain 2-likeSuperfamily: Ribonuclease PH domain 2-likeFamily: Ribonuclease PH domain 2-like
91 c5yvqB_ 
 
not modelled 
8.8 
25 
PDB header: viral proteinChain:  B: PDB Molecule: tail fiber assembly protein u;PDBTitle:  complex of mu phage tail fiber and its chaperone
92 c5n2hA_ 
 
not modelled 
8.6 
7 
PDB header: transferaseChain:  A: PDB Molecule: dna polymerase;PDBTitle:  structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
93 c3cymA_ 
 
not modelled 
8.6 
13 
PDB header: structural genomics, unknown functionChain:  A: PDB Molecule: uncharacterized protein bad_0989;PDBTitle:  crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
94 c3tndC_ 
 
not modelled 
8.4 
29 
PDB header: translation, toxinChain:  C: PDB Molecule: trna(fmet)-specific endonuclease vapc;PDBTitle:  crystal structure of shigella flexneri vapbc toxin-antitoxin complex
95 d1khba2 
 
not modelled 
7.5 
14 
Fold: PEP carboxykinase N-terminal domainSuperfamily: PEP carboxykinase N-terminal domainFamily: PEP carboxykinase N-terminal domain
96 c4uzmA_ 
 
not modelled 
7.3 
50 
PDB header: structural proteinChain:  A: PDB Molecule: putative membrane protein igaa homolog;PDBTitle:  shotgun proteolysis: a practical application
97 c3vhjA_ 
 
not modelled 
7.3 
17 
PDB header: membrane proteinChain:  A: PDB Molecule: bfpc;PDBTitle:  crystal structure of the cytoplasmic domain of bfpc
98 c2kcdA_ 
 
not modelled 
7.2 
45 
PDB header: structural genomics, unknown functionChain:  A: PDB Molecule: uncharacterized protein ssp0047;PDBTitle:  solution nmr structure of ssp0047 from staphylococcus2 saprophyticus. northeast structural genomics consortium3 target syr6.
99 c2xetB_ 
 
not modelled 
7.1 
33 
PDB header: transport proteinChain:  B: PDB Molecule: f1 capsule-anchoring protein;PDBTitle:  conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly