Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2179c_(-)_2441819_2442325
DateMon Aug 5 13:25:30 BST 2019
Unique Job IDa095f8b412cb3ed8
SequenceVRYFYDTEFI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.916 Y:45.369 Z:42.335
Model (left) based on template c4hecB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 96%
161 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4hecB_



100.0 100
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
2c5cy4C_



99.6 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:oligoribonuclease;
PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
3d2igia1



99.6 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
4d2f96a1



99.6 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
5c2gbzA_



99.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
6c2p1jB_



99.6 19
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
7c6n6jB_



99.5 14
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
8c3tr8A_



99.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
9c6n6dA_



99.5 12
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: vibrio cholerae oligoribonuclease bound to pag
10c5z9xA_



99.5 16
PDB header:plant protein/rna
Chain: A: PDB Molecule:small rna degrading nuclease 1;
PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
11d1wlja_



99.5 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
12d1j9aa_



99.5 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
13d1y97a1



99.5 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
14c6a4dA_



99.5 10
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
15d3b6oa1



99.5 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
16d2qxfa1



99.4 10
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
17c4fzxC_



99.4 18
PDB header:hydrolase/dna
Chain: C: PDB Molecule:exodeoxyribonuclease 10;
PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
18d2guia1



99.4 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
19c4wbqA_



99.4 17
PDB header:rna binding protein
Chain: A: PDB Molecule:qde-2-interacting protein;
PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
20c4rg8A_



99.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease i;
PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
21c3u6fA_



not modelled 99.4 18
PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
22d1w0ha_



not modelled 99.4 10
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
23c5fkvD_



not modelled 99.4 18
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
24c2xriA_



not modelled 99.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
25c3cm6A_



not modelled 99.1 15
PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
26c1zbhA_



not modelled 99.1 12
PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
27c1zbuB_



not modelled 99.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
28c2is3B_



not modelled 99.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
29c5l80B_



not modelled 98.7 11
PDB header:rna binding protein
Chain: B: PDB Molecule:maternal protein exuperantia,maternal protein exuperantia;
PDBTitle: structure of exuperantia exo-like and sam-like domains
30d1uoca_



not modelled 98.1 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
31d2d5ra1



not modelled 97.7 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
32c2p51A_



not modelled 97.6 19
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:spcc18.06c protein;
PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
33c4czwA_



not modelled 97.3 13
PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
34c4gmjB_



not modelled 97.2 17
PDB header:rna binding protein
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
35d1kfsa1



not modelled 97.1 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
36c2kzzA_



not modelled 96.9 21
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
37c1njzA_



not modelled 96.2 27
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
38d1x9ma1



not modelled 96.2 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
39c4x0pB_



not modelled 95.9 13
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase theta;
PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
40c5dkuB_



not modelled 93.9 10
PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
41c5zo4B_



not modelled 92.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative 3'-5' exonuclease family protein;
PDBTitle: inactive state of the nuclease
42d2hhva1



not modelled 91.2 25
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
43c4xviA_



not modelled 91.2 9
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
44c1tk0A_



not modelled 88.9 19
PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
45c4q8jA_



not modelled 87.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
46d2ajta1



not modelled 86.5 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:FucI/AraA C-terminal domain-like
Family:AraA C-terminal domain-like
47c1yt3A_



not modelled 85.3 20
PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
48d1s5ja1



not modelled 83.7 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
49c2e6mA_



not modelled 79.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
50c6k1dB_



not modelled 72.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
51c1s5jA_



not modelled 68.1 18
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
52c1d5aA_



not modelled 67.8 17
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
53d2g3ra2



not modelled 60.0 33
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
54d1ih7a1



not modelled 57.0 12
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
55c4r1oF_



not modelled 56.9 21
PDB header:isomerase
Chain: F: PDB Molecule:l-arabinose isomerase;
PDBTitle: crystal structure of thermophilic geobacillus kaustophilus l-arabinose2 isomerase
56c2hxgB_



not modelled 55.7 20
PDB header:isomerase
Chain: B: PDB Molecule:l-arabinose isomerase;
PDBTitle: crystal structure of mn2+ bound ecai
57d1noya_



not modelled 51.0 12
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
58c5c0xK_



not modelled 50.8 11
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
59d1yt3a3



not modelled 50.5 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
60d1tgoa1



not modelled 42.6 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
61d1d5aa1



not modelled 39.9 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
62c3d45B_



not modelled 34.8 13
PDB header:hydrolase
Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of mouse parn in complex with m7gpppg
63c4oo1J_



not modelled 34.4 18
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
64d1wn7a1



not modelled 31.1 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
65c2gv9A_



not modelled 28.9 11
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
66d1qhta1



not modelled 26.2 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
67d1kkoa2



not modelled 24.9 16
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
68d2hbka2



not modelled 21.9 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
69d1q8ia1



not modelled 20.6 25
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
70c3r8rJ_



not modelled 17.5 43
PDB header:transferase
Chain: J: PDB Molecule:transaldolase;
PDBTitle: transaldolase from bacillus subtilis
71d1l6wa_



not modelled 16.2 29
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
72d2fe1a1



not modelled 15.8 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
73c2fe1A_



not modelled 15.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
74c2gv9B_



not modelled 15.4 13
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
75d1vpxa_



not modelled 14.8 43
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
76c2m7oA_



not modelled 13.9 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein np_346341.1 from streptococcus pneumoniae
77c3iayA_



not modelled 13.5 18
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
78d1wx0a1



not modelled 12.8 29
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
79d1kcza2



not modelled 12.7 19
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
80c6nklA_



not modelled 11.9 43
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
81c3s1vD_



not modelled 11.8 43
PDB header:transferase
Chain: D: PDB Molecule:probable transaldolase;
PDBTitle: transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate
82c3zvkC_



not modelled 11.7 29
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
83c2jz7A_



not modelled 11.6 17
PDB header:selenium-binding protein
Chain: A: PDB Molecule:selenium binding protein;
PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii
84c6s7qG_



not modelled 11.5 16
PDB header:lyase
Chain: G: PDB Molecule:ergothionase;
PDBTitle: crystal structure of ergothioneine degrading enzyme ergothionase from2 treponema denticola in complex with desmethyl-ergothioneine sulfonic3 acid
85c2dtuA_



not modelled 11.4 13
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
86c3bsuF_



not modelled 11.1 13
PDB header:hydrolase/rna/dna
Chain: F: PDB Molecule:ribonuclease h1;
PDBTitle: hybrid-binding domain of human rnase h1 in complex with 12-2 mer rna/dna
87c2vwkA_



not modelled 10.8 18
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
88d2py5a1



not modelled 9.6 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
89d2dsya1



not modelled 9.3 26
Fold:TTHA1013/TTHA0281-like
Superfamily:TTHA1013/TTHA0281-like
Family:TTHA0281-like
90d1e3ha6



not modelled 9.2 32
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
91c5yvqB_



not modelled 8.8 25
PDB header:viral protein
Chain: B: PDB Molecule:tail fiber assembly protein u;
PDBTitle: complex of mu phage tail fiber and its chaperone
92c5n2hA_



not modelled 8.6 7
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
93c3cymA_



not modelled 8.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
94c3tndC_



not modelled 8.4 29
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
95d1khba2



not modelled 7.5 14
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
96c4uzmA_



not modelled 7.3 50
PDB header:structural protein
Chain: A: PDB Molecule:putative membrane protein igaa homolog;
PDBTitle: shotgun proteolysis: a practical application
97c3vhjA_



not modelled 7.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:bfpc;
PDBTitle: crystal structure of the cytoplasmic domain of bfpc
98c2kcdA_



not modelled 7.2 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ssp0047;
PDBTitle: solution nmr structure of ssp0047 from staphylococcus2 saprophyticus. northeast structural genomics consortium3 target syr6.
99c2xetB_



not modelled 7.1 33
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

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