Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2191_(-)_2453827_2455764
DateMon Aug 5 13:25:31 BST 2019
Unique Job ID3af73f575de2ccb5
SequenceVQGPNVAAMG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.150 Y:65.572 Z:98.798
Model (left) based on template c5fkvD_
Top template information
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
Confidence and coverage
Confidence:100.0% Coverage: 33%
210 residues ( 33% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5fkvD_



100.0 25
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
2c1zbhA_



100.0 17
PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
3d1y97a1



100.0 25
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
4d2qxfa1



100.0 24
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
5c2p1jB_



100.0 39
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
6c3cm6A_



100.0 16
PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
7c1zbuB_



100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
8c5l80B_



100.0 17
PDB header:rna binding protein
Chain: B: PDB Molecule:maternal protein exuperantia,maternal protein exuperantia;
PDBTitle: structure of exuperantia exo-like and sam-like domains
9c3u6fA_



100.0 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
10d2guia1



100.0 28
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
11c4rg8A_



100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease i;
PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
12d2f96a1



100.0 27
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
13d3b6oa1



100.0 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
14d1w0ha_



100.0 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
15c2xriA_



100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
16c5z9xA_



100.0 22
PDB header:plant protein/rna
Chain: A: PDB Molecule:small rna degrading nuclease 1;
PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
17c3tr8A_



100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
18c4fzxC_



100.0 32
PDB header:hydrolase/dna
Chain: C: PDB Molecule:exodeoxyribonuclease 10;
PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
19c2is3B_



100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
20c6n6jB_



100.0 20
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
21d1j9aa_



not modelled 100.0 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
22c6n6dA_



not modelled 100.0 20
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: vibrio cholerae oligoribonuclease bound to pag
23c4wbqA_



not modelled 100.0 18
PDB header:rna binding protein
Chain: A: PDB Molecule:qde-2-interacting protein;
PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
24d2igia1



not modelled 100.0 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
25c6a4dA_



not modelled 100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
26c2gbzA_



not modelled 100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
27d1wlja_



not modelled 100.0 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
28c5cy4C_



not modelled 100.0 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:oligoribonuclease;
PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
29c2wshC_



not modelled 99.9 17
PDB header:hydrolase
Chain: C: PDB Molecule:endonuclease ii;
PDBTitle: structure of bacteriophage t4 endoii e118a mutant
30c1yd2A_



not modelled 99.9 26
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation
31c1yd6A_



not modelled 99.9 30
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrc;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax
32d1uoca_



not modelled 99.7 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
33c2p51A_



not modelled 99.6 20
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:spcc18.06c protein;
PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
34d2d5ra1



not modelled 99.6 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
35c4czwA_



not modelled 99.5 18
PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
36c4gmjB_



not modelled 99.5 16
PDB header:rna binding protein
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
37c4hecB_



not modelled 99.4 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
38d1kfsa1



not modelled 99.3 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
39d1x9ma1



not modelled 99.3 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
40c2kzzA_



not modelled 99.3 19
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
41c5dkuB_



not modelled 99.2 13
PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
42c3d45B_



not modelled 99.2 18
PDB header:hydrolase
Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of mouse parn in complex with m7gpppg
43c4q8jA_



not modelled 99.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
44c2a1sC_



not modelled 99.1 23
PDB header:hydrolase
Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of native parn nuclease domain
45c1tk0A_



not modelled 99.0 20
PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
46c1njzA_



not modelled 99.0 16
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
47c4x0pB_



not modelled 99.0 13
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase theta;
PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
48d1qhta1



not modelled 98.9 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
49d2hhva1



not modelled 98.9 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
50d1wn7a1



not modelled 98.9 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
51d1tgoa1



not modelled 98.9 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
52d1mk0a_



not modelled 98.8 14
Fold:GIY-YIG endonuclease
Superfamily:GIY-YIG endonuclease
Family:GIY-YIG endonuclease
53c4m8oA_



not modelled 98.8 16
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp
54d1d5aa1



not modelled 98.8 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
55c5zo4B_



not modelled 98.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative 3'-5' exonuclease family protein;
PDBTitle: inactive state of the nuclease
56c5okiA_



not modelled 98.7 18
PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
57d1e52a_



not modelled 98.7 17
Fold:Long alpha-hairpin
Superfamily:C-terminal UvrC-binding domain of UvrB
Family:C-terminal UvrC-binding domain of UvrB
58c2gv9B_



not modelled 98.7 18
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
59c5mdnB_



not modelled 98.7 22
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
60c2vwkA_



not modelled 98.6 19
PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
61c2gv9A_



not modelled 98.6 17
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
62c6fwkB_



not modelled 98.6 16
PDB header:dna binding protein
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
63c3iayA_



not modelled 98.6 22
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
64d1ih7a1



not modelled 98.6 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
65c1d5aA_



not modelled 98.5 19
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
66c4q5vA_



not modelled 98.5 16
PDB header:transferase/dna/rna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin
67c5exrG_



not modelled 98.4 17
PDB header:replication
Chain: G: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of human primosome
68c6r5kA_



not modelled 98.4 16
PDB header:rna binding protein
Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
69c2dtuA_



not modelled 98.4 16
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
70d1noya_



not modelled 98.4 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
71d1q8ia1



not modelled 98.4 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
72c4xviA_



not modelled 98.3 14
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
73c5c0xK_



not modelled 98.3 23
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
74c2nrrA_



not modelled 98.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the c-terminal rnaseh endonuclase domain of uvrc
75d1s5ja1



not modelled 98.3 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
76c1yt3A_



not modelled 98.3 21
PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
77c4fydA_



not modelled 98.2 13
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
78c4ktqA_



not modelled 98.2 19
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (large fragment of dna polymerase i);
PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
79c5n2hA_



not modelled 98.2 12
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
80c4oo1J_



not modelled 98.2 23
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
81c1q8iA_



not modelled 98.0 19
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
82c2e6mA_



not modelled 97.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
83c3cymA_



not modelled 97.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
84d1yt3a3



not modelled 97.9 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
85c1s5jA_



not modelled 97.9 17
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
86d2hbka2



not modelled 97.8 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
87c6k1dB_



not modelled 97.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
88c2lwfA_



not modelled 97.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:monothiol glutaredoxin-s16, chloroplastic;
PDBTitle: structure of n-terminal domain of a plant grx
89c2d7dB_



not modelled 97.4 26
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
90c4ztuA_



not modelled 97.3 34
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
91c4ybgA_



not modelled 97.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:protein maelstrom;
PDBTitle: crystal structure of the mael domain of drosophila melanogaster2 maelstrom
92c2hbkA_



not modelled 97.1 23
PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
93d1qoja_



not modelled 97.1 24
Fold:Long alpha-hairpin
Superfamily:C-terminal UvrC-binding domain of UvrB
Family:C-terminal UvrC-binding domain of UvrB
94c5c0wK_



not modelled 97.0 22
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
95c3ikmD_



not modelled 97.0 30
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase holoenzyme
96c4nlbA_



not modelled 96.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:ribosomal rna processing protein 6;
PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
97c3sahA_



not modelled 96.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:exosome component 10;
PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
98d1vk0a_



not modelled 96.2 17
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
99c3nicA_



not modelled 95.7 23
PDB header:hydrolase/dna
Chain: A: PDB Molecule:eco29kir;
PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f
100c5af0B_



not modelled 95.4 11
PDB header:unknown protein
Chain: B: PDB Molecule:maelstrom;
PDBTitle: mael domain from bombyx mori maelstrom
101c1ywlA_



not modelled 95.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0213 protein ef2693;
PDBTitle: solution nmr structure of the protein ef2693 from e.2 faecalis: northeast structural genomics consortium target3 efr36
102c1zg2A_



not modelled 95.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0213 protein bh0048;
PDBTitle: solution nmr structure of the upf0213 protein bh0048 from2 bacillus halodurans. northeast structural genomics target3 bhr2.
103c1cmwA_



not modelled 94.7 22
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
104c5v5fA_



not modelled 93.3 15
PDB header:transferase
Chain: A: PDB Molecule:at3g11770;
PDBTitle: crystal structure of rice1 (pnt2)
105d2py5a1



not modelled 93.0 24
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
106c2d7dA_



not modelled 91.5 30
PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
107c2ex3I_



not modelled 85.3 22
PDB header:transferase/replication
Chain: I: PDB Molecule:dna polymerase;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
108c4xlgA_



not modelled 84.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:structure-specific endonuclease subunit slx1;
PDBTitle: c. glabrata slx1 in complex with slx4ccd.
109d1pd0a4



not modelled 64.1 30
Fold:Gelsolin-like
Superfamily:C-terminal, gelsolin-like domain of Sec23/24
Family:C-terminal, gelsolin-like domain of Sec23/24
110c3opyE_



not modelled 57.4 17
PDB header:transferase
Chain: E: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
111c2p4vA_



not modelled 57.1 11
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
112c3opyG_



not modelled 53.7 17
PDB header:transferase
Chain: G: PDB Molecule:6-phosphofructo-1-kinase alpha-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
113d1utaa_



not modelled 48.6 31
Fold:Ferredoxin-like
Superfamily:Sporulation related repeat
Family:Sporulation related repeat
114d2ga9d1



not modelled 48.0 14
Fold:Poly(A) polymerase catalytic subunit-like
Superfamily:Poly(A) polymerase catalytic subunit-like
Family:Poxvirus poly(A) polymerase catalytic subunit-like
115c1f0cB_



not modelled 41.2 35
PDB header:viral protein
Chain: B: PDB Molecule:ice inhibitor;
PDBTitle: structure of the viral serpin crma
116c3o8oC_



not modelled 35.1 15
PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
117d1xdpa4



not modelled 35.0 25
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
118c3auoB_



not modelled 34.6 14
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
119d2o8ra4



not modelled 33.0 21
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
120c4hndB_



not modelled 32.4 23
PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 4-kinase type 2-alpha;
PDBTitle: crystal structure of the catalytic domain of selenomethionine2 substituted human pi4kiialpha in complex with adp

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below