Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2194_(qcrC)_2457561_2458403
DateMon Aug 5 13:25:32 BST 2019
Unique Job ID1244753794aa4ad4
SequenceLTKLGFTRSG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.096 Y:45.272 Z:85.533
Model (left) based on template c6adqC_
Top template information
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome bc1 complex cytochrome c subunit;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 80%
223 residues ( 80% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
277 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6adqC_
100.0 79
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome bc1 complex cytochrome c subunit;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
2c6hwhj_
100.0 83
PDB header:electron transport
Chain: J: PDB Molecule:co-purified unknown peptide built as polyala;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
3c5lo9B_
100.0 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: thiosulfate dehydrogenase (tsdba) from marichromatium purpuratum - "as2 isolated" form
4c3mk7F_
100.0 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
5c1fcdD_
99.9 16
PDB header:electron transport(flavocytochrome)
Chain: D: PDB Molecule:flavocytochrome c sulfide dehydrogenase
PDBTitle: the structure of flavocytochrome c sulfide dehydrogenase2 from a purple phototrophic bacterium chromatium vinosum at3 2.5 angstroms resolution
6c4v2kA_
99.9 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiosulfate dehydrogenase;
PDBTitle: crystal structure of the thiosulfate dehydrogenase tsda in2 complex with thiosulfate
7c6h5lB_
99.9 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:conserved hypothetical cytochrome protein;
PDBTitle: kuenenia stuttgartiensis reducing hao-like protein complex2 kustc0457/kustc0458
8c1m70D_
99.9 20
PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c4;
PDBTitle: crystal structure of oxidized recombinant cytochrome c4 from2 pseudomonas stutzeri
9c1h1oA_
99.8 18
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552;
PDBTitle: acidithiobacillus ferrooxidans cytochrome c4 structure2 supports a complex-induced tuning of electron transfer
10c3oa8A_
99.8 15
PDB header:heme-binding protein/heme-binding protei
Chain: A: PDB Molecule:soxa;
PDBTitle: diheme soxax
11c6btmE_
99.8 18
PDB header:membrane protein
Chain: E: PDB Molecule:alternative complex iii subunit e;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
12c2yevB_
99.7 15
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
13c6f0kE_
99.7 23
PDB header:membrane protein
Chain: E: PDB Molecule:quinol:cytochrome c oxidoreductase monoheme cytochrome
PDBTitle: alternative complex iii
14d2gc4d1
99.7 16
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
15c1h32A_
99.7 20
PDB header:electron transfer
Chain: A: PDB Molecule:diheme cytochrome c;
PDBTitle: reduced soxax complex from rhodovulum sulfidophilum
16d2c8sa1
99.7 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
17c2d0wA_
99.7 16
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome cl;
PDBTitle: crystal structure of cytochrome cl from hyphomicrobium2 denitrificans
18c2c1dC_
99.6 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:soxa;
PDBTitle: crystal structure of soxxa from p. pantotrophus
19c4aaoA_
99.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: maca-h93g
20d1wvec1
99.6 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
21c6e1cB_
not modelled 99.6 26
PDB header:metal binding protein
Chain: B: PDB Molecule:di-heme enzyme;
PDBTitle: crystal structure of a maug-like protein associated with microbial2 copper homeostasis
22d1ctja_
not modelled 99.6 25
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
23c2xtsD_
not modelled 99.6 17
PDB header:oxidoreductase/electron transport
Chain: D: PDB Molecule:cytochrome;
PDBTitle: crystal structure of the sulfane dehydrogenase soxcd from paracoccus2 pantotrophus
24d1c6ra_
not modelled 99.6 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
25d1nira1
not modelled 99.6 15
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
26d1gdva_
not modelled 99.6 27
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
27c5c2wF_
not modelled 99.6 23
PDB header:oxidoreductase
Chain: F: PDB Molecule:hypothetical (di heme) protein;
PDBTitle: kuenenia stuttgartiensis hydrazine synthase pressurized with 20 bar2 xenon
28d1cyja_
not modelled 99.6 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
29d1f1fa_
not modelled 99.6 27
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
30c4ljiA_
not modelled 99.6 21
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-550-like protein;
PDBTitle: crystal structure at 1.5 angstrom resolution of the psbv2 cytochrome2 from the cyanobacterium thermosynechococcus elongatus
31c3dmiA_
not modelled 99.6 31
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystallization and structural analysis of cytochrome c62 from the diatom phaeodactylum tricornutum at 1.5 a3 resolution
32d1kx7a_
not modelled 99.6 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
33c4ax3A_
not modelled 99.6 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper-containing nitrite reductase;
PDBTitle: structure of three-domain heme-cu nitrite reductase from ralstonia2 pickettii at 1.6 a resolution
34c3dp5A_
not modelled 99.6 17
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: crystal structure of geobacter sulfurreducens omcf with n-2 terminal strep-tag ii
35d1kv9a1
not modelled 99.6 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
36d1gksa_
not modelled 99.6 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
37c2c1uB_
not modelled 99.6 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase2 from paracoccus pantotrophus - oxidised form
38c4gydA_
not modelled 99.6 28
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: nostoc sp cytochrome c6
39c2zonG_
not modelled 99.6 21
PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome c551;
PDBTitle: crystal structure of electron transfer complex of nitrite reductase2 with cytochrome c
40d1e2rb1
not modelled 99.6 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
41c3dr0B_
not modelled 99.6 26
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c6;
PDBTitle: structure of reduced cytochrome c6 from synechococcus sp. pcc 7002
42d1c6sa_
not modelled 99.6 29
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
43c4eieA_
not modelled 99.6 21
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: crystal structure of cytochrome c6c from synechococcus sp. pcc 7002
44d1kb0a1
not modelled 99.6 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinoprotein alcohol dehydrogenase, C-terminal domain
45c2zooA_
not modelled 99.6 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase;
PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125
46d1hzua1
not modelled 99.5 16
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
47d1ls9a_
not modelled 99.5 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
48c1nmlA_
not modelled 99.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
49c3hq7A_
not modelled 99.5 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
50c4kmgA_
not modelled 99.5 18
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6 (soluble cytochrome f) (cytochrome c553);
PDBTitle: crystal structure of cytochrome c6b from synechococcus sp. wh8102
51d1c75a_
not modelled 99.5 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
52c1zzhA_
not modelled 99.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c peroxidase;
PDBTitle: structure of the fully oxidized di-heme cytochrome c2 peroxidase from r. capsulatus
53d1h9xa1
not modelled 99.5 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
54d1cc5a_
not modelled 99.5 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
55d1dy7b1
not modelled 99.5 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
56c5xdhD_
not modelled 99.5 21
PDB header:electron transport
Chain: D: PDB Molecule:putative cytochrome c;
PDBTitle: his/dopa ligated cytochrome c from an anammox organism ksu-1
57c3cu4A_
not modelled 99.5 21
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens
58d1qksa1
not modelled 99.5 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
59c2v07A_
not modelled 99.5 28
PDB header:photosynthesis
Chain: A: PDB Molecule:cytochrome c6;
PDBTitle: structure of the arabidopsis thaliana cytochrome c6a v52q variant
60c3o5cA_
not modelled 99.5 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: cytochrome c peroxidase bccp of shewanella oneidensis
61c4j20B_
not modelled 99.5 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c-555;
PDBTitle: x-ray structure of the cytochrome c-554 from chlorobaculum tepidum
62c4pwaA_
not modelled 99.5 25
PDB header:electron transport
Chain: A: PDB Molecule:putative cytochrome c;
PDBTitle: crystal structure of the c-type cytochrome soru from sinorhizobium2 meliloti
63d1c52a_
not modelled 99.5 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
64c5mxzA_
not modelled 99.5 28
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c-552 ks_3358;
PDBTitle: kustc0563 y40f mutant
65d1yeba_
not modelled 99.5 24
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
66c3o0rC_
not modelled 99.5 18
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
67d1fcdc2
not modelled 99.5 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
68c4xydB_
not modelled 99.5 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:norc-like protein;
PDBTitle: nitric oxide reductase from roseobacter denitrificans (rdnor)
69c1iqcB_
not modelled 99.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:di-heme peroxidase;
PDBTitle: crystal structure of di-heme peroxidase from nitrosomonas europaea
70d1wejf_
not modelled 99.5 25
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
71d1dvha_
not modelled 99.4 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
72d1ycca_
not modelled 99.4 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
73d1e29a_
not modelled 99.4 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
74d1ytca_
not modelled 99.4 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
75d1c53a_
not modelled 99.4 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
76d1hj3a1
not modelled 99.4 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
77c6onqA_
not modelled 99.4 16
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c xoxg;
PDBTitle: crystal structure of c-type cytochrome xoxg from methylobacterium2 extorquens am1
78d1mz4a_
not modelled 99.4 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
79d1f1ca_
not modelled 99.4 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
80c1w5cT_
not modelled 99.4 26
PDB header:photosynthesis
Chain: T: PDB Molecule:cytochrome c-550;
PDBTitle: photosystem ii from thermosynechococcus elongatus
81d1lfma_
not modelled 99.4 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
82d1m70a1
not modelled 99.4 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
83c2w9kA_
not modelled 99.4 20
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crithidia fasciculata cytochrome c
84d1ccra_
not modelled 99.4 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
85d1j3sa_
not modelled 99.4 24
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
86d1m70a2
not modelled 99.4 24
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
87c1w2lA_
not modelled 99.4 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome oxidase subunit ii;
PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase
88d1cnoa_
not modelled 99.4 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
89d1ql3a_
not modelled 99.4 18
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
90c4xxlA_
not modelled 99.4 18
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c class i;
PDBTitle: crystal structure of class 1 cytochrome mtod from sideroxydans2 lithotrophicus es-1
91c4o1wD_
not modelled 99.4 21
PDB header:electron transport
Chain: D: PDB Molecule:cytochrome c552;
PDBTitle: crystal structure of colwellia psychrerythraea cytochrome c
92c2vhdB_
not modelled 99.4 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: crystal structure of the di-haem cytochrome c peroxidase from2 pseudomonas aeruginosa - mixed valence form
93c2zzsW_
not modelled 99.3 18
PDB header:electron transport
Chain: W: PDB Molecule:
PDBTitle: crystal structure of cytochrome c554 from vibrio2 parahaemolyticus strain rimd2210633
94c3m97X_
not modelled 99.3 19
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c-552;
PDBTitle: structure of the soluble domain of cytochrome c552 with its flexible2 linker segment from paracoccus denitrificans
95d1h1oa2
not modelled 99.3 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
96d1co6a_
not modelled 99.3 19
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
97c6fu3B_
not modelled 99.3 17
PDB header:electron transport
Chain: B: PDB Molecule:protein ccpr;
PDBTitle: structure of the mixed-valence, active form, of cytochrome c2 peroxidase from obligate human pathogenic bacterium neisseria3 gonorrhoeae
98d1fcdc1
not modelled 99.3 14
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
99d1hroa_
not modelled 99.3 26
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
100c3cp5A_
not modelled 99.3 16
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: cytochrome c from rhodothermus marinus
101d1h1oa1
not modelled 99.3 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Two-domain cytochrome c
102d1qn2a_
not modelled 99.2 25
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
103c2l4dA_
not modelled 99.2 21
PDB header:electron transport
Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c;
PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida
104d1fi3a_
not modelled 99.2 24
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
105d1h32b_
not modelled 99.2 18
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
106d351ca_
not modelled 99.2 21
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
107c6rteB_
not modelled 99.2 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: dihydro-heme d1 dehydrogenase nirn in complex with dhe
108c2c1dB_
not modelled 99.2 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:soxx;
PDBTitle: crystal structure of soxxa from p. pantotrophus
109c3l4oB_
not modelled 99.2 23
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:methylamine utilization protein maug;
PDBTitle: crystal structure of the maug/pre-methylamine dehydrogenase complex2 after treatment with hydrogen peroxide
110c1nnoA_
not modelled 99.2 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: conformational changes occurring upon no binding in nitrite reductase2 from pseudomonas aeruginosa
111c6nx0A_
not modelled 99.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase family protein;
PDBTitle: crystal structure of the diheme peroxidase btha from burkholderia2 thailandensis e264
112c5n1tB_
not modelled 99.2 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
113d3c2ca_
not modelled 99.2 25
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
114c3oa8B_
not modelled 99.2 23
PDB header:heme-binding protein/heme-binding protei
Chain: B: PDB Molecule:soxx;
PDBTitle: diheme soxax
115d1cxca_
not modelled 99.2 20
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
116d1cora_
not modelled 99.2 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
117c2d0sA_
not modelled 99.1 20
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
118d1ynra1
not modelled 99.1 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
119c1kv9A_
not modelled 99.1 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase;
PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
120d1a56a_
not modelled 99.1 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below