Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2195_(qcrA)_2458400_2459689
DateMon Aug 5 13:25:32 BST 2019
Unique Job ID0e03e826dcc7c175
SequenceMSRADDDAVG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:89.403 Y:63.783 Z:108.697
Model (left) based on template c6hwhB_
Top template information
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 89%
380 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hwhB_



100.0 81
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
2c2fyuE_



100.0 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
3d1nyka_



100.0 32
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
4c2fynO_



100.0 15
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
5c2e76D_



99.9 27
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
6d1jm1a_



99.9 26
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
7c1p84E_



99.9 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
8d3cx5e1



99.9 21
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
9d1riea_



99.9 20
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
10c4aayH_



99.9 24
PDB header:oxidoreductase
Chain: H: PDB Molecule:arob;
PDBTitle: crystal structure of the arsenite oxidase protein complex2 from rhizobium species strain nt-26
11d1g8kb_



99.8 29
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
12c2nvgA_



99.8 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: soluble domain of rieske iron sulfur protein.
13c6fo2R_



99.8 25
PDB header:membrane protein
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cryoem structure of bovine cytochrome bc1 with no ligand bound
14d1rfsa_



99.7 30
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
15d2e74d1



99.7 34
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
16d1q90c_



99.6 33
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
17c2qpzA_



99.5 23
PDB header:metal binding protein
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin
PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin
18d1fqta_



99.4 26
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
19c2i7fB_



99.4 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin component of dioxygenase;
PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
20c3gceA_



99.4 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a-
PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177
21c5cxmC_



not modelled 99.4 31
PDB header:metal binding protein
Chain: C: PDB Molecule:cytochrome b6/f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cyanobacterial plasma membrane rieske protein2 petc3 from synechocystis pcc 6803
22d1vm9a_



not modelled 99.3 23
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
23c2de7E_



not modelled 99.3 24
PDB header:oxidoreductase
Chain: E: PDB Molecule:ferredoxin component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
24c3dqyA_



not modelled 99.3 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin
PDBTitle: crystal structure of toluene 2,3-dioxygenase ferredoxin
25d3c0da1



not modelled 99.1 19
Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
26d2jzaa1



not modelled 99.0 13
Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
27c4aivA_



not modelled 99.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase [nad(p)h] small subunit nird;
PDBTitle: crystal structure of putative nadh-dependent nitrite reductase small2 subunit from mycobacterium tuberculosis
28d2jo6a1



not modelled 98.9 15
Fold:ISP domain
Superfamily:ISP domain
Family:NirD-like
29d2de6a1



not modelled 98.9 21
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
30c3d89A_



not modelled 98.8 17
PDB header:electron transport
Chain: A: PDB Molecule:rieske domain-containing protein;
PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus
31d1ulia1



not modelled 98.8 25
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
32d1z01a1



not modelled 98.6 22
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
33d1wqla1



not modelled 98.5 22
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
34d1o7na1



not modelled 98.5 20
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
35d2bmoa1



not modelled 98.4 22
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
36d2b1xa1



not modelled 98.3 16
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
37c4qdfA_



not modelled 97.6 24
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:3-ketosteroid 9alpha-hydroxylase oxygenase;
PDBTitle: crystal structure of apo ksha5 and ksha1 in complex with 1,4-30q-coa2 from r. rhodochrous
38c4qdfB_



not modelled 97.3 20
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: B: PDB Molecule:3-ketosteroid 9alpha-hydroxylase oxygenase;
PDBTitle: crystal structure of apo ksha5 and ksha1 in complex with 1,4-30q-coa2 from r. rhodochrous
39c3gcfC_



not modelled 96.9 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:terminal oxygenase component of carbazole 1,9a-
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from2 nocardioides aromaticivorans ic177
40c3gteB_



not modelled 96.6 23
PDB header:electron transport, oxidoreductase
Chain: B: PDB Molecule:ddmc;
PDBTitle: crystal structure of dicamba monooxygenase with non-heme iron
41c2zylA_



not modelled 96.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible oxidoreductase;
PDBTitle: crystal structure of 3-ketosteroid-9-alpha-hydroxylase2 (ksha) from m. tuberculosis
42c2b1xE_



not modelled 96.5 15
PDB header:oxidoreductase
Chain: E: PDB Molecule:naphthalene dioxygenase large subunit;
PDBTitle: crystal structure of naphthalene 1,2-dioxygenase from rhodococcus sp.
43c3gkqB_



not modelled 96.4 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole 1,9a-dioxygenase;
PDBTitle: terminal oxygenase of carbazole 1,9a-dioxygenase from novosphingobium2 sp. ka1
44c1z01D_



not modelled 96.4 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase
PDBTitle: 2-oxoquinoline 8-monooxygenase component: active site modulation by2 rieske-[2fe-2s] center oxidation/reduction
45c3n0qA_



not modelled 96.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative aromatic-ring hydroxylating dioxygenase;
PDBTitle: crystal structure of a putative aromatic-ring hydroxylating2 dioxygenase (tm1040_3219) from silicibacter sp. tm1040 at 1.80 a3 resolution
46c2de7B_



not modelled 96.1 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:terminal oxygenase component of carbazole;
PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase
47c3vcaA_



not modelled 96.1 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:ring-hydroxylating dioxygenase;
PDBTitle: quaternary ammonium oxidative demethylation: x-ray crystallographic,2 resonance raman and uv-visible spectroscopic analysis of a rieske-3 type demethylase
48c1uljA_



not modelled 96.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:biphenyl dioxygenase large subunit;
PDBTitle: biphenyl dioxygenase (bpha1a2) in complex with the substrate
49c2gbxE_



not modelled 95.9 21
PDB header:oxidoreductase
Chain: E: PDB Molecule:biphenyl 2,3-dioxygenase alpha subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
50c1wqlA_



not modelled 95.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:iron-sulfur protein large subunit of cumene dioxygenase;
PDBTitle: cumene dioxygenase (cuma1a2) from pseudomonas fluorescens ip01
51c2hmnA_



not modelled 95.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase alpha subunit;
PDBTitle: crystal structure of the naphthalene 1,2-dioxygenase f352v2 mutant bound to anthracene.
52c3egyX_



not modelled 48.0 31
PDB header:transferase
Chain: X: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of human thymidyalte synthase a191k with loop 181-2 197 stabilized in the inactive conformation
53c1hw3A_



not modelled 38.7 31
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase;
PDBTitle: structure of human thymidylate synthase suggests advantages of2 chemotherapy with noncompetitive inhibitors
54d1tl2a_



not modelled 29.7 21
Fold:5-bladed beta-propeller
Superfamily:Tachylectin-2
Family:Tachylectin-2
55c3a44D_



not modelled 29.6 14
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
56d2nvpa1



not modelled 27.9 33
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
57c6d80A_



not modelled 26.1 12
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter from n.2 fischeri bound to saposin
58d1seja2



not modelled 26.1 38
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
59c5yq72_



not modelled 25.8 21
PDB header:photosynthesis
Chain: 2: PDB Molecule:beta subunit of light-harvesting 1;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
60d1sfea1



not modelled 25.6 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
61c2oipE_



not modelled 23.8 38
PDB header:transferase, oxidoreductase
Chain: E: PDB Molecule:chain a, crystal structure of dhfr;
PDBTitle: crystal structure of the s290g active site mutant of ts-dhfr from2 cryptosporidium hominis
62c2aydA_



not modelled 23.0 19
PDB header:transcription
Chain: A: PDB Molecule:wrky transcription factor 1;
PDBTitle: crystal structure of the c-terminal wrky domainof atwrky1, an sa-2 induced and partially npr1-dependent transcription factor
63c3k2hA_



not modelled 21.8 43
PDB header:transferase
Chain: A: PDB Molecule:dihydrofolate reductase/thymidylate synthase;
PDBTitle: co-crystal structure of dihydrofolate reductase/thymidylate synthase2 from babesia bovis with dump, pemetrexed and nadp
64d1qnta1



not modelled 21.4 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
65c5b6dB_



not modelled 21.3 21
PDB header:transferase
Chain: B: PDB Molecule:cmp 5-hydroxymethylase;
PDBTitle: crystal structure of cytidine monophosphate hydroxymethylase mila with2 cmp
66c2k8sA_



not modelled 20.7 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: solution nmr structure of dimeric thioredoxin-like protein2 ne0084 from nitrosomonas europea: northeast structural3 genomics target net6
67c5zkxA_



not modelled 20.5 26
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: the postfusion structure of human-infecting bourbon virus envelope2 glycoprotein
68c2a2vA_



not modelled 20.4 37
PDB header:toxin
Chain: A: PDB Molecule:jingzhaotoxin-xi;
PDBTitle: the solution structure of jingzhaotoxin-xi
69c6hu9u_



not modelled 20.0 20
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
70d1j3kc_



not modelled 20.0 43
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
71c4iu8A_



not modelled 19.5 12
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
72d1qzfa2



not modelled 19.3 38
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
73c3v8hB_



not modelled 19.0 36
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase from burkholderia2 thailandensis
74d1hvya_



not modelled 18.6 43
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
75c3qj7D_



not modelled 18.1 43
PDB header:transferase
Chain: D: PDB Molecule:thymidylate synthase;
PDBTitle: crystal structure of the mycobacterium tuberculosis thymidylate2 synthase (thya) bound to dump
76d2g8oa1



not modelled 18.1 43
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
77d1bkpa_



not modelled 17.9 36
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
78d1rnfa_



not modelled 17.6 21
Fold:RNase A-like
Superfamily:RNase A-like
Family:Ribonuclease A-like
79c1yx3A_



not modelled 17.3 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dsrc;
PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
80c5mb9C_



not modelled 17.1 75
PDB header:chaperone
Chain: C: PDB Molecule:putative ribosome associated protein;
PDBTitle: crystal structure of the eukaryotic ribosome associated complex (rac),2 a unique hsp70/hsp40 pair
81c6rlxA_



not modelled 16.9 57
PDB header:hormone(muscle relaxant)
Chain: A: PDB Molecule:relaxin, a-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
82c2mv1A_



not modelled 16.9 57
PDB header:signaling protein
Chain: A: PDB Molecule:relaxin a chain;
PDBTitle: solution nmr structure of human relaxin-2
83c6rlxC_



not modelled 16.9 57
PDB header:hormone(muscle relaxant)
Chain: C: PDB Molecule:relaxin, a-chain;
PDBTitle: x-ray structure of human relaxin at 1.5 angstroms. comparison to2 insulin and implications for receptor binding determinants
84d1b5ea_



not modelled 16.7 14
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
85c4fo9A_



not modelled 16.5 32
PDB header:ligase
Chain: A: PDB Molecule:e3 sumo-protein ligase pias2;
PDBTitle: crystal structure of the e3 sumo ligase pias2
86d2tsra_



not modelled 16.3 43
Fold:Thymidylate synthase/dCMP hydroxymethylase
Superfamily:Thymidylate synthase/dCMP hydroxymethylase
Family:Thymidylate synthase/dCMP hydroxymethylase
87c4eckB_



not modelled 16.2 43
PDB header:transferase, oxidoreductase
Chain: B: PDB Molecule:bifunctional dihydrofolate reductase-thymidylate synthase;
PDBTitle: crystal structure of the toxoplasma gondii ts-dhfr
88d1wj2a_



not modelled 16.2 38
Fold:WRKY DNA-binding domain
Superfamily:WRKY DNA-binding domain
Family:WRKY DNA-binding domain
89c4iu9A_



not modelled 16.1 12
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
90c4hg6B_



not modelled 15.9 16
PDB header:transferase
Chain: B: PDB Molecule:cellulose synthase subunit b;
PDBTitle: structure of a cellulose synthase - cellulose translocation2 intermediate
91c5mb9D_



not modelled 15.5 75
PDB header:chaperone
Chain: D: PDB Molecule:putative ribosome associated protein;
PDBTitle: crystal structure of the eukaryotic ribosome associated complex (rac),2 a unique hsp70/hsp40 pair
92c6et5u_



not modelled 15.0 20
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
93c4wvmA_



not modelled 14.6 21
PDB header:toxin
Chain: A: PDB Molecule:stonustoxin subunit alpha;
PDBTitle: stonustoxin structure
94c5zjiH_



not modelled 14.1 14
PDB header:membrane protein
Chain: H: PDB Molecule:photosystem i reaction center subunit vi, chloroplastic;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
95c5yq7C_



not modelled 13.9 43
PDB header:photosynthesis
Chain: C: PDB Molecule:cytochrome subunit of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
96d2ewla1



not modelled 13.6 46
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
97c2narA_



not modelled 13.6 11
PDB header:protein binding
Chain: A: PDB Molecule:effector protein avr3a;
PDBTitle: solution structure of avr3a_60-147 from phytophthora infestans
98c5zktA_



not modelled 13.5 38
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
99c3wmmP_



not modelled 13.4 22
PDB header:photosynthesis
Chain: P: PDB Molecule:lh1 beta polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form

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Transmembrane helix prediction 

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