Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2196_(qcrB)_2459686_2461335
DateMon Aug 5 13:25:32 BST 2019
Unique Job ID00c4330076072f7e
SequenceMSPKLSPPNI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:87.987 Y:87.057 Z:83.853
Model (left) based on template c6hwhb_
Top template information
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 97%
534 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hwhb_
100.0 83
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
2c2qjkM_
100.0 22
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome b;
PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin
3c3cx5N_
100.0 20
PDB header:oxidoreductase
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: structure of complex iii with bound cytochrome c in reduced state and2 definition of a minimal core interface for electron transfer.
4c3cwbC_
100.0 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome b;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
5d3cx5c2
100.0 22
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
6d1bccc3
100.0 21
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
7d1ppjc2
100.0 24
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
8d1q90b_
100.0 27
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
9d2e74a1
100.0 31
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
10d2e74b1
100.0 19
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
11d1q90d_
99.9 18
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
12d3cx5c1
99.9 14
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
13d1vf5b_
99.9 19
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
14d1ppjc1
99.9 14
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
15d1bccc2
99.9 16
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
16d1kqfc_
97.4 11
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Formate dehydrogenase N, cytochrome (gamma) subunit
17c4gd3A_
96.0 17
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:ni/fe-hydrogenase 1 b-type cytochrome subunit;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
18c4gd3B_
96.0 17
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:ni/fe-hydrogenase 1 b-type cytochrome subunit;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
19c5oc0A_
86.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b561;
PDBTitle: structure of e. coli superoxide oxidase
20c4aq5B_
69.4 15
PDB header:membrane protein
Chain: B: PDB Molecule:acetylcholine receptor beta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
21c3aygA_
not modelled 62.2 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
22c2bg9B_
not modelled 61.1 15
PDB header:ion channel/receptor
Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
23c5xmjG_
not modelled 52.6 13
PDB header:electron transport
Chain: G: PDB Molecule:fumarate reductase respiratory complex;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
24c4hydA_
not modelled 49.4 20
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a presenilin family intramembrane aspartate protease in2 c2221 space group
25c6rdi8_
not modelled 44.1 23
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1a,2 monomer-masked refinement
26c6rdr8_
not modelled 44.1 23
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1d,2 monomer-masked refinement
27d1z9ha1
not modelled 39.4 23
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
28c5o0tA_
not modelled 28.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:putative ferric reductase;
PDBTitle: crystal structure of trans-membrane domain of cylindrospermum stagnale2 nadph-oxidase 5 (nox5)
29c1bhbA_
not modelled 20.0 27
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy
30d1khba2
not modelled 18.0 23
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
31c2fahB_
not modelled 16.2 16
PDB header:lyase
Chain: B: PDB Molecule:phosphoenolpyruvate carboxykinase;
PDBTitle: the structure of mitochondrial pepck, complex with mn and gdp
32c6e8wC_
not modelled 14.2 10
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
33d1qlec_
not modelled 12.0 13
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
34c2h3oA_
not modelled 11.9 18
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
35d2bs2c1
not modelled 11.2 12
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC
36c4lb6B_
not modelled 9.8 39
PDB header:transferase/dna
Chain: B: PDB Molecule:protein kinase containing z-dna binding domains;
PDBTitle: crystal structure of pkz zalpha in complex with ds(cg)6 (tetragonal2 form)
37c5fshA_
not modelled 9.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:csm6;
PDBTitle: crystal structure of thermus thermophilus csm6
38c2vpiA_
not modelled 9.5 21
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase;
PDBTitle: human gmp synthetase - glutaminase domain
39c2m67A_
not modelled 9.1 14
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
40d1pn2a1
not modelled 8.6 37
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:MaoC-like
41c2mpnB_
not modelled 8.4 20
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
42d2e74g1
not modelled 8.2 22
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
43c2jh3C_
not modelled 8.1 19
PDB header:ribosomal protein
Chain: C: PDB Molecule:ribosomal protein s2-related protein;
PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains
44d1s9ca2
not modelled 8.1 37
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:MaoC-like
45c2zciD_
not modelled 7.8 20
PDB header:signaling protein, lyase
Chain: D: PDB Molecule:phosphoenolpyruvate carboxykinase [gtp];
PDBTitle: structure of a gtp-dependent bacterial pep-carboxykinase2 from corynebacterium glutamicum
46d1m56c_
not modelled 7.7 16
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
47c5jqfB_
not modelled 7.7 70
PDB header:unknown function
Chain: B: PDB Molecule:sphingopyxin i;
PDBTitle: crystal structure of the lasso peptide sphingopyxin i (spi)
48c5jqfA_
not modelled 7.7 70
PDB header:unknown function
Chain: A: PDB Molecule:sphingopyxin i;
PDBTitle: crystal structure of the lasso peptide sphingopyxin i (spi)
49c1y4eA_
not modelled 7.4 22
PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: nmr structure of transmembrane segment iv of the nhe12 isoform of the na+/h+ exchanger
50c2e76G_
not modelled 7.2 21
PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6-f complex subunit 5;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
51c5zlgA_
not modelled 7.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b reductase 1;
PDBTitle: human duodenal cytochrome b (dcytb) in zinc ion and ascorbate bound2 form
52c6elhA_
not modelled 7.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
53d3byqa1
not modelled 6.6 18
Fold:Bacillus chorismate mutase-like
Superfamily:BB2672-like
Family:BB2672-like
54c5v2sA_
not modelled 6.6 19
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
55c1gpmD_
not modelled 6.5 17
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
56d2gtaa1
not modelled 6.5 16
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:MazG-like
57c2kdrX_
not modelled 6.4 23
PDB header:viral protein, membrane protein
Chain: X: PDB Molecule:non-structural protein 4b;
PDBTitle: solution structure of hcv ns4b(227-254)
58c3omlA_
not modelled 6.3 20
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:peroxisomal multifunctional enzyme type 2, cg3415;
PDBTitle: structure of full-length peroxisomal multifunctional enzyme type 22 from drosophila melanogaster
59c2micA_
not modelled 6.1 27
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
60c2micB_
not modelled 6.1 27
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
61c2od8B_
not modelled 6.1 15
PDB header:protein binding
Chain: B: PDB Molecule:dna ligase i, mitochondrial precursor;
PDBTitle: structure of a peptide derived from cdc9 bound to pcna
62c1wa7B_
not modelled 6.1 43
PDB header:sh3 domain
Chain: B: PDB Molecule:hypothetical 28.7 kda protein in dhfr 3'region
PDBTitle: sh3 domain of human lyn tyrosine kinase in complex with a2 herpesviral ligand
63c1wazA_
not modelled 6.0 21
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
64c5tw7E_
not modelled 5.9 17
PDB header:ligase
Chain: E: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: crystal structure of a gmp synthase (glutamine-hydrolyzing) from2 neisseria gonorrhoeae
65d1gpma2
not modelled 5.9 17
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
66d1qdlb_
not modelled 5.8 18
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
67c2j0bA_
not modelled 5.7 50
PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-n-acetylglucosaminyltransferase manic fringe;
PDBTitle: structure of the catalytic domain of mouse manic fringe in2 complex with udp and manganese
68c5sy1A_
not modelled 5.6 16
PDB header:membrane protein/calcium binding protein
Chain: A: PDB Molecule:stra6;
PDBTitle: structure of the stra6 receptor for retinol uptake in complex with2 calmodulin
69c2n7iA_
not modelled 5.6 35
PDB header:hormone receptor
Chain: A: PDB Molecule:prolactin receptor;
PDBTitle: nmr structure of the prolactin receptor transmembrane domain
70c2n28A_
not modelled 5.6 15
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
71d2qj2a1
not modelled 5.4 25
Fold:Hairpin loop containing domain-like
Superfamily:Hairpin loop containing domain-like
Family:Hairpin loop containing domain
72d2zgwa1
not modelled 5.4 28
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Biotin repressor (BirA)
73c3msqC_
not modelled 5.3 11
PDB header:biosynthetic protein
Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein;
PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
74d1k3ia1
not modelled 5.2 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
75c3jcuj_
not modelled 5.2 29
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
76c2kwvA_
not modelled 5.2 44
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm1 of murine polymerase iota in complex with2 ubiquitin
77d2p5ka1
not modelled 5.2 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
78c2xc7A_
not modelled 5.2 11
PDB header:rna binding protein
Chain: A: PDB Molecule:phosphorylated adapter rna export protein;
PDBTitle: solution structure of phax-rbd in complex with ssrna
79c6e1kA_
not modelled 5.1 14
PDB header:membrane protein
Chain: A: PDB Molecule:two pore calcium channel protein 1;
PDBTitle: structure of attpc1(dde) reconstituted in saposin a with cat06 fab
80c6mk1V_
not modelled 5.1 60
PDB header:protein fibril
Chain: V: PDB Molecule:
PDBTitle: cryo-em of self-assembly peptide filament heat_r1
81d2d0oa3
not modelled 5.1 23
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below