Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2199c_(-)_2463241_2463660
DateMon Aug 5 13:25:32 BST 2019
Unique Job IDf7a41ee49e53b97b
SequenceMHIEARLFEF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.784 Y:61.272 Z:66.663
Model (left) based on template c6hwhX_
Top template information
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage:100%
139 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hwhX_



100.0 78
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
2c2yevA_



89.7 16
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c oxidase polypeptide i+iii;
PDBTitle: structure of caa3-type cytochrome oxidase
3d1qlec_



88.7 33
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
4d1m56c_



87.1 27
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
5d1v54c_



86.0 20
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
6c6hu9o_



80.6 22
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:cytochrome c1, heme protein, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
7d1g2913



41.6 33
Fold:OB-fold
Superfamily:MOP-like
Family:ABC-transporter additional domain
8c6btmC_



39.9 11
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
9c3eh4A_



38.1 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase subunit 1;
PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus
10c2l9uB_



36.8 22
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
11c6mupK_



36.3 45
PDB header:nuclear protein
Chain: K: PDB Molecule:centromere protein c;
PDBTitle: cenp-a nucleosome bound by two copies of cenp-c(cd) and two copies2 cenp-n(nt)
12c6mupL_



35.4 45
PDB header:nuclear protein
Chain: L: PDB Molecule:centromere protein c;
PDBTitle: cenp-a nucleosome bound by two copies of cenp-c(cd) and two copies2 cenp-n(nt)
13c6muoK_



35.4 45
PDB header:nuclear protein
Chain: K: PDB Molecule:centromere protein c;
PDBTitle: cenp-a nucleosome bound by two copies of cenp-c(cd) and one copy cenp-2 n(nt)
14d1xmea1



30.7 9
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
15c2l9uA_



30.1 22
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
16c4djiA_



26.6 13
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
17c3eweD_



22.8 16
PDB header:protein transport,structural protein
Chain: D: PDB Molecule:nucleoporin nup85;
PDBTitle: crystal structure of the nup85/seh1 complex
18d2bm8a1



22.2 36
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:CmcI-like
19c5xavB_



22.1 50
PDB header:biosynthetic protein
Chain: B: PDB Molecule:intracellular polyhydroxyalkanoate synthase;
PDBTitle: structure of phac from chromobacterium sp. usm2
20c2lx0A_



20.1 25
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
21c6cfwI_



not modelled 19.7 15
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
22c5t6oA_



not modelled 19.0 50
PDB header:biosynthetic protein
Chain: A: PDB Molecule:poly-beta-hydroxybuterate polymerase;
PDBTitle: structure of the catalytic domain of the class i polyhydroxybutyrate2 synthase from cupriavidus necator
23c2jlnA_



not modelled 17.7 15
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
24c2nuuF_



not modelled 17.7 20
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
25c2mtpB_



not modelled 17.6 29
PDB header:protein binding/cell adhesion
Chain: B: PDB Molecule:integrin alpha-iib;
PDBTitle: the structure of filamin repeat 21 bound to integrin
26c3a0hJ_



not modelled 16.8 26
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
27d2axtj1



not modelled 16.8 26
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
28c5mpoA_



not modelled 16.1 18
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin synthase sulfur carrier subunit;
PDBTitle: crystal structure of human molybdopterin synthase complex
29c6f0kC_



not modelled 15.1 12
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
30c5aexB_



not modelled 15.0 23
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
31c2m4eA_



not modelled 14.2 17
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution nmr structure of vv2_0175 from vibrio vulnificus, nesg target2 vnr1 and csgid target idp91333
32d1ci3m1



not modelled 14.0 30
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
33c2k74A_



not modelled 13.7 13
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
34c1jjoB_



not modelled 13.1 50
PDB header:signaling protein
Chain: B: PDB Molecule:neuroserpin;
PDBTitle: crystal structure of mouse neuroserpin (cleaved form)
35c3jcuj_



not modelled 11.3 21
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
36c5xnmj_



not modelled 10.6 26
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
37c1s4wA_



not modelled 10.4 27
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: nmr structure of the cytoplasmic domain of integrin aiib in2 dpc micelles
38c1dpkA_



not modelled 10.4 27
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib subunit;
PDBTitle: solution structure of the cytoplasmic domain of the2 integrin alpha-iib subunit
39c1m8oA_



not modelled 10.4 27
PDB header:membrane protein
Chain: A: PDB Molecule:platelet integrin alfaiib subunit: cytoplasmic
PDBTitle: platelet integrin alfaiib-beta3 cytoplasmic domain
40c2kncA_



not modelled 9.6 16
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
41c2b2hA_



not modelled 9.4 20
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
42c5abvF_



not modelled 9.0 100
PDB header:translation
Chain: F: PDB Molecule:gh11071p;
PDBTitle: complex of d. melanogaster eif4e with the 4e-binding2 protein mextli
43d1u7ga_



not modelled 9.0 19
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
44c1cirA_



not modelled 9.0 38
PDB header:serine protease inhibitor
Chain: A: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: complex of two fragments of ci2 [(1-40)(dot)(41-64)]
45c4ewcA_



not modelled 7.8 38
PDB header:rna binding protein
Chain: A: PDB Molecule:putative nucleoprotein;
PDBTitle: crystal structure of the infectious salmon anemia virus nucleoprotein
46c5lc5m_



not modelled 7.7 22
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4;
PDBTitle: structure of mammalian respiratory complex i, class2
47c6itcB_



not modelled 7.5 50
PDB header:protein transport
Chain: B: PDB Molecule:translocating peptide;
PDBTitle: structure of a substrate engaged seca-secy protein translocation2 machine
48c6g2jJ_



not modelled 7.4 14
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-ubiquinone oxidoreductase chain 6;
PDBTitle: mouse mitochondrial complex i in the active state
49c4n6eB_



not modelled 7.0 28
PDB header:lyase/biosynthetic protein
Chain: B: PDB Molecule:this/moad family protein;
PDBTitle: crystal structure of amycolatopsis orientalis bexx/cyso complex
50d1d0da_



not modelled 7.0 31
Fold:BPTI-like
Superfamily:BPTI-like
Family:Soft tick anticoagulant proteins
51c5t13A_



not modelled 6.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:cyanuric acid amidohydrolase;
PDBTitle: structure of the cyanuric acid hydrolase trzd reveals product exit2 channel
52c5ir6A_



not modelled 6.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
53c1tapA_



not modelled 6.8 31
PDB header:proteinase inhibitor
Chain: A: PDB Molecule:factor xa inhibitor;
PDBTitle: nmr solution structure of recombinant tick anticoagulant2 protein (rtap), a factor xa inhibitor from the tick3 ornithodoros moubata
54d1ldna2



not modelled 6.8 16
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
55d1tu2b1



not modelled 6.7 32
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:Cytochrome f, large domain
Family:Cytochrome f, large domain
56d1ckma1



not modelled 6.6 38
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
57c3i31A_



not modelled 6.4 40
PDB header:rna binding protein,hydrolase
Chain: A: PDB Molecule:heat resistant rna dependent atpase;
PDBTitle: hera helicase rna binding domain is an rrm fold
58c2l52A_



not modelled 6.4 24
PDB header:protein binding
Chain: A: PDB Molecule:methanosarcina acetivorans samp1 homolog;
PDBTitle: solution structure of the small archaeal modifier protein 1 (samp1)2 from methanosarcina acetivorans
59c2g1eA_



not modelled 6.4 20
PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein ta0895;
PDBTitle: solution structure of ta0895
60d2r8ca1



not modelled 5.8 23
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:Zn-dependent arginine carboxypeptidase-like
61c4kppA_



not modelled 5.8 11
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
62d1m9la_



not modelled 5.5 18
Fold:Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
Superfamily:Outer arm dynein light chain 1
Family:Outer arm dynein light chain 1
63c1dpqA_



not modelled 5.4 27
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib subunit;
PDBTitle: solution structure of the constitutively active mutant of2 the integrin alpha iib cytoplasmic domain.
64c3dclC_



not modelled 5.4 37
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:tm1086;
PDBTitle: crystal structure of tm1086
65c6jbzD_



not modelled 5.4 15
PDB header:transferase
Chain: D: PDB Molecule:moad/this family protein;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
66d2hi7b1



not modelled 5.3 13
Fold:Bromodomain-like
Superfamily:DsbB-like
Family:DsbB-like
67c1tu2B_



not modelled 5.3 32
PDB header:electron transport
Chain: B: PDB Molecule:apocytochrome f;
PDBTitle: the complex of nostoc cytochrome f and plastocyanin determin with2 paramagnetic nmr. based on the structures of cytochrome f and3 plastocyanin, 10 structures
68c5xtdo_



not modelled 5.3 11
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: cryo-em structure of human respiratory complex i
69c3e9jC_



not modelled 5.3 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb;
PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb
70d1tsfa_



not modelled 5.3 40
Fold:Rof/RNase P subunit-like
Superfamily:Rof/RNase P subunit-like
Family:RNase P subunit p29-like
71c6jc0A_



not modelled 5.2 8
PDB header:transferase
Chain: A: PDB Molecule:putative molybdenum cofactor biosynthesis protein d2
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
72d1gywb_



not modelled 5.2 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:gamma-adaptin C-terminal appendage domain-like
73c3zguA_



not modelled 5.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:cyanuric acid amidohydrolase;
PDBTitle: the 'tricorne' fold: a novel fold for a unique family of ring-opening2 amidases.
74c4inmV_



not modelled 5.1 38
PDB header:structural protein/dna
Chain: V: PDB Molecule:cenp-c;
PDBTitle: crystal structure of cenp-c in complex with the nucleosome core2 particle

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Transmembrane helix prediction 

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