Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2203_(-)_2468239_2468931
DateMon Aug 5 13:25:33 BST 2019
Unique Job IDddcbcebfe5bdfe45
SequenceMPGPHSPNPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.767 Y:39.720 Z:32.703
Model (left) based on template c5im3A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of the class i ribonucleotide reductase from2 pseudomonas aeruginosa in complex with datp
Confidence and coverage
Confidence: 53.8% Coverage: 28%
65 residues ( 28% of your sequence) have been modelled with 53.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5im3A_
53.8 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of the class i ribonucleotide reductase from2 pseudomonas aeruginosa in complex with datp
2d1rlra1
48.7 10
Fold:R1 subunit of ribonucleotide reductase, N-terminal domain
Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain
Family:R1 subunit of ribonucleotide reductase, N-terminal domain
3c3r1rB_
47.5 11
PDB header:complex (oxidoreductase/peptide)
Chain: B: PDB Molecule:ribonucleotide reductase r1 protein;
PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
4c2wn8A_
40.6 15
PDB header:transferase
Chain: A: PDB Molecule:adp-ribosyltransferase enzymatic component;
PDBTitle: structural basis for substrate recognition in the enzymatic2 component of adp-ribosyltransferase toxin cdta from3 clostridium difficile
5d2k54a1
38.9 25
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Atu0742-like
6c2nytB_
37.2 20
PDB header:hydrolase
Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2;
PDBTitle: the apobec2 crystal structure and functional implications2 for aid
7d3cu3a1
34.1 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
8c4hpmA_
33.6 34
PDB header:transcription
Chain: A: PDB Molecule:bcl-6 corepressor-like protein 1;
PDBTitle: pcgf1 ub fold (rawul)/bcorl1 pufd complex
9c3bb9D_
32.2 12
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
10c4u13B_
31.3 19
PDB header:transferase
Chain: B: PDB Molecule:putative polyketide cyclase sma1630;
PDBTitle: crystal structure of putative polyketide cyclase (protein sma1630)2 from sinorhizobium meliloti at 2.3 a resolution
11d1nwwa_
31.2 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Limonene-1,2-epoxide hydrolase-like
12c5h03A_
30.5 9
PDB header:toxin
Chain: A: PDB Molecule:binary enterotoxin of clostridium perfringens component a;
PDBTitle: crystal structure of an adp-ribosylating toxin beca from c.2 perfringens
13d1oh0a_
30.1 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ketosteroid isomerase-like
14d1vqo21
28.8 71
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Ribosomal protein L39e
Family:Ribosomal protein L39e
15c5cxoA_
28.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: intriguing role of epoxide hydrolase/cyclase-like enzyme salbiii in2 pyran ring formation in polyether salinomycin
16d1m1eb_
27.9 16
Fold:beta-catenin-interacting protein ICAT
Superfamily:beta-catenin-interacting protein ICAT
Family:beta-catenin-interacting protein ICAT
17c6of9G_
27.9 12
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
18c4hplA_
26.9 37
PDB header:transcription
Chain: A: PDB Molecule:bcl-6 corepressor;
PDBTitle: pcgf1 ub fold (rawul)/bcor pufd complex
19c3dukD_
26.4 18
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
20d3en8a1
25.5 21
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rpa4348-like
21d2a15a1
not modelled 24.3 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ketosteroid isomerase-like
22d2gexa1
not modelled 22.4 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SnoaL-like polyketide cyclase
23c1giqA_
not modelled 22.3 12
PDB header:toxin
Chain: A: PDB Molecule:iota toxin component ia;
PDBTitle: crystal structure of the enzymatic componet of iota-toxin from2 clostridium perfringens with nadh
24c4e1tA_
not modelled 22.1 23
PDB header:cell adhesion
Chain: A: PDB Molecule:invasin;
PDBTitle: x-ray crystal structure of the transmembrane beta-domain from invasin2 from yersinia pseudotuberculosis
25c3j21f_
not modelled 20.7 71
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l6p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
26c5ifeC_
not modelled 20.4 22
PDB header:splicing
Chain: C: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: crystal structure of the human sf3b core complex
27c4e1sA_
not modelled 20.1 19
PDB header:cell adhesion
Chain: A: PDB Molecule:intimin;
PDBTitle: x-ray crystal structure of the transmembrane beta-domain from intimin2 from ehec strain o157:h7
28c3wmdA_
not modelled 20.1 19
PDB header:isomerase
Chain: A: PDB Molecule:probable monensin biosynthesis isomerase;
PDBTitle: crystal structure of epoxide hydrolase monbi
29c6bjuD_
not modelled 17.2 15
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
30c5ezuA_
not modelled 16.2 27
PDB header:viral protein
Chain: A: PDB Molecule:protein a46;
PDBTitle: crystal structure of the n-terminal domain of vaccinia virus2 immunomodulator a46 in complex with myristic acid.
31d1ohpa1
not modelled 15.9 32
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ketosteroid isomerase-like
32c4kvhA_
not modelled 13.9 23
PDB header:unknown function
Chain: A: PDB Molecule:ketosteroid isomerase fold protein hmuk_0747;
PDBTitle: crystal structure of ketosteroid isomerase fold protein hmuk_0747
33c4i4kB_
not modelled 13.8 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
34c3msoA_
not modelled 13.4 19
PDB header:isomerase
Chain: A: PDB Molecule:steroid delta-isomerase;
PDBTitle: crystal structure of a steroid delta-isomerase (np_250810.1) from2 pseudomonas aeruginosa at 2.57 a resolution
35c4dbgB_
not modelled 13.1 35
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
36c3robC_
not modelled 13.1 13
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
37d1z1sa1
not modelled 12.8 32
Fold:Cystatin-like
Superfamily:NTF2-like
Family:PhzA/PhzB-like
38c3zf7q_
not modelled 12.7 71
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
39d3dmca1
not modelled 12.4 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:PhzA/PhzB-like
40d1m98a2
not modelled 11.9 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Orange carotenoid protein, C-terminal domain
41c3izso_
not modelled 11.7 57
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
42c3fkaD_
not modelled 11.2 18
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
43c1kqfB_
not modelled 11.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
44c4a1bB_
not modelled 10.4 67
PDB header:ribosome
Chain: B: PDB Molecule:rpl39;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
45c3k13A_
not modelled 10.3 12
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydrofolate-homocysteine methyltransferase;
PDBTitle: structure of the pterin-binding domain metr of 5-2 methyltetrahydrofolate-homocysteine methyltransferase from3 bacteroides thetaiotaomicron
46c2zkr3_
not modelled 10.1 83
PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
47c3sy8C_
not modelled 9.8 9
PDB header:transcription regulator
Chain: C: PDB Molecule:rocr;
PDBTitle: crystal structure of the response regulator rocr
48c5ig0A_
not modelled 9.7 19
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
49c2rbfB_
not modelled 9.5 56
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
50c1z1sA_
not modelled 9.5 32
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa3332;
PDBTitle: crystal structure of putative isomerase pa3332 from2 pseudomonas aeruginosa
51c5ig5E_
not modelled 9.4 12
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
52c3c8lB_
not modelled 9.3 21
PDB header:unknown function
Chain: B: PDB Molecule:ftsz-like protein of unknown function;
PDBTitle: crystal structure of a ftsz-like protein of unknown function2 (npun_r1471) from nostoc punctiforme pcc 73102 at 1.22 a resolution
53c3fgyB_
not modelled 8.9 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein (bxe_b1094) from burkholderia2 xenovorans lb400 at 1.59 a resolution
54d1z21a1
not modelled 8.9 25
Fold:Type III secretion system domain
Superfamily:Type III secretion system domain
Family:YopR Core
55c2amnA_
not modelled 8.8 38
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cathelicidin;
PDBTitle: solution structure of fowlicidin-1, a novel cathelicidin2 antimicrobial peptide from chicken
56d2np5a2
not modelled 8.6 10
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
57d2gxfa1
not modelled 8.4 32
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
58c5jthB_
not modelled 8.4 29
PDB header:transferase
Chain: B: PDB Molecule:myosin light chain kinase, smooth muscle;
PDBTitle: crystal structure of e67a calmodulin - cam:rm20 complex
59c5jqaB_
not modelled 8.4 29
PDB header:calcium binding protein/protein binding
Chain: B: PDB Molecule:myosin light chain kinase, smooth muscle;
PDBTitle: cam:rm20 complex
60c5aiiP_
not modelled 8.4 17
PDB header:hydrolase
Chain: P: PDB Molecule:limonene-1,2-epoxide hydrolase;
PDBTitle: discovery and characterization of thermophilic limonene-1,2-epoxide2 hydrolases from hot spring metagenomic libraries.3 ch55-sample-peg complex
61d2bnga1
not modelled 8.3 42
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Limonene-1,2-epoxide hydrolase-like
62c5k8qB_
not modelled 8.2 45
PDB header:metal binding protein
Chain: B: PDB Molecule:zgc:136689;
PDBTitle: crystal structure of calcium-loaded calmodulin in complex with stra62 cambp2-site peptide.
63c3h3hA_
not modelled 8.2 19
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized snoal-like protein;
PDBTitle: crystal structure of a snoal-like protein of unknown function2 (bth_ii0226) from burkholderia thailandensis e264 at 1.60 a3 resolution
64d1giqa2
not modelled 8.0 13
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
65c6fejA_
not modelled 7.9 15
PDB header:photosynthesis
Chain: A: PDB Molecule:all4940 protein;
PDBTitle: anabaena apo-c-terminal domain homolog protein
66c3f8hA_
not modelled 7.9 23
PDB header:unknown function
Chain: A: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (tm1040_3560) from2 silicibacter sp. tm1040 at 2.00 a resolution
67d3cx5e2
not modelled 7.8 21
Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
68d2ay0a1
not modelled 7.7 54
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
69c3vowB_
not modelled 7.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:probable dna dc->du-editing enzyme apobec-3c;
PDBTitle: crystal structure of the human apobec3c having hiv-1 vif-binding2 interface
70d1t6ua_
not modelled 7.6 15
Fold:Four-helical up-and-down bundle
Superfamily:Nickel-containing superoxide dismutase, NiSOD
Family:Nickel-containing superoxide dismutase, NiSOD
71d1uf0a_
not modelled 7.6 24
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
72c4bj5A_
not modelled 7.4 43
PDB header:transcription
Chain: A: PDB Molecule:protein rif2;
PDBTitle: crystal structure of rif2 in complex with the c-terminal domain of2 rap1 (rap1-rct)
73c5li2C_
not modelled 7.2 19
PDB header:viral protein
Chain: C: PDB Molecule:tail sheath protein;
PDBTitle: bacteriophage phi812k1-420 tail sheath and tail tube protein in native2 tail
74d1gr0a2
not modelled 7.1 29
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
75c5wqhE_
not modelled 6.9 5
PDB header:isomerase
Chain: E: PDB Molecule:isomerase trt14;
PDBTitle: structure of fungal meroterpenoid isomerase trt14 complexed with2 substrate analog and endo-terretonin d
76c3f7sA_
not modelled 6.9 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
77c6s2pN_
not modelled 6.8 26
PDB header:plant protein
Chain: N: PDB Molecule:nrc1;
PDBTitle: structure of the nb-arc domain from the tomato immune receptor nrc1
78c1qsuC_
not modelled 6.7 56
PDB header:structural protein
Chain: C: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
79d3blza1
not modelled 6.7 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
80d2oz4a1
not modelled 6.4 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
81c5ir2A_
not modelled 6.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: crystal structure of novel cellulases from microbes associated with2 the gut ecosystem
82c1qsuA_
not modelled 6.2 56
PDB header:structural protein
Chain: A: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
83c1qsuB_
not modelled 6.2 56
PDB header:structural protein
Chain: B: PDB Molecule:protein ((pro-hyp-gly)4- glu-lys-gly(pro-hyp-gly)5);
PDBTitle: crystal structure of the triple-helical collagen-like peptide, (pro-2 hyp-gly)4-glu-lys-gly(pro-hyp-gly)5
84c5x9jB_
not modelled 6.2 4
PDB header:isomerase
Chain: B: PDB Molecule:prhc;
PDBTitle: strucutre of prhc from penicillium brasilianum nbrc 6234
85c6b4aB_
not modelled 6.1 20
PDB header:structural protein
Chain: B: PDB Molecule:doublecortin;
PDBTitle: crystal structure of the c-terminal domain of doublecortin (tgdcx)2 from toxoplasma gondii me49
86d2f86b1
not modelled 6.0 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
87c5tkmA_
not modelled 5.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3b;
PDBTitle: crystal structure of human apobec3b n-terminal domain
88c5evhA_
not modelled 5.9 30
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of known function protein from kribbella flavida dsm2 17836
89c4yptA_
not modelled 5.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: x-ray structural of three tandemly linked domains of nsp3 from murine2 hepatitis virus at 2.60 angstroms resolution
90c3f40A_
not modelled 5.6 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_677363.1) from cytophaga hutchinsonii atcc 33406 at 1.27 a3 resolution
91c4atuI_
not modelled 5.6 30
PDB header:hydrolase
Chain: I: PDB Molecule:neuronal migration protein doublecortin;
PDBTitle: human doublecortin n-dc repeat plus linker, and tubulin (2xrp) docked2 into an 8a cryo-em map of doublecortin-stabilised microtubules3 reconstructed in absence of kinesin
92c6iyaD_
not modelled 5.6 31
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
93d3b7ca1
not modelled 5.5 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
94c3tu6A_
not modelled 5.4 26
PDB header:electron transport
Chain: A: PDB Molecule:pseudoazurin (blue copper protein);
PDBTitle: the structure of a pseudoazurin from sinorhizobium meliltoi
95c6fc1D_
not modelled 5.4 60
PDB header:translation
Chain: D: PDB Molecule:protein eap1;
PDBTitle: crystal structure of the eif4e-eap1p complex from saccharomyces2 cerevisiae in the cap-bound state
96d2rcda1
not modelled 5.3 24
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
97c3fniA_
not modelled 5.3 43
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
98c4fc9B_
not modelled 5.3 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the c-terminal domain of the type iii effector xcv32202 (xopl)
99c3pawD_
not modelled 5.3 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase large chain 1;
PDBTitle: low resolution x-ray crystal structure of yeast rnr1p with datp bound2 in the a-site

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Transmembrane helix prediction 

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