Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2204c_(-)_2468939_2469295
DateMon Aug 5 13:25:33 BST 2019
Unique Job ID31fb4182cb504cc9
SequenceMTVQNEPSAK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.627 Y:46.516 Z:42.281
Model (left) based on template c2d2aA_
Top template information
PDB header:metal transport
Chain: A: PDB Molecule:sufa protein;
PDBTitle: crystal structure of escherichia coli sufa involved in biosynthesis of2 iron-sulfur clusters
Confidence and coverage
Confidence:100.0% Coverage: 96%
113 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d2aA_



100.0 32
PDB header:metal transport
Chain: A: PDB Molecule:sufa protein;
PDBTitle: crystal structure of escherichia coli sufa involved in biosynthesis of2 iron-sulfur clusters
2c2apnA_



100.0 43
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein hi1723;
PDBTitle: hi1723 solution structure
3c1x0gA_



100.0 32
PDB header:metal binding protein
Chain: A: PDB Molecule:isca;
PDBTitle: crystal structure of isca with the [2fe-2s] cluster
4c2k4zA_



100.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dsrr;
PDBTitle: solution nmr structure of allochromatium vinosum dsrr:2 northeast structural genomics consortium target op5
5d1s98a_



100.0 33
Fold:HesB-like domain
Superfamily:HesB-like domain
Family:HesB-like domain
6d1nwba_



100.0 37
Fold:HesB-like domain
Superfamily:HesB-like domain
Family:HesB-like domain
7d2p2ea1



98.1 16
Fold:HesB-like domain
Superfamily:HesB-like domain
Family:HesB-like domain
8c2qgoA_



97.9 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative fe-s biosynthesis protein;
PDBTitle: crystal structure of a putative fe-s biosynthesis protein from2 lactobacillus acidophilus
9d1sp2a_



17.4 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
10c2x5hD_



16.2 18
PDB header:viral protein
Chain: D: PDB Molecule:orf 131;
PDBTitle: crystal structure of the orf131 l26m l51m double mutant2 from sulfolobus islandicus rudivirus 1
11d1zfda_



16.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
12d1a1ia1



13.9 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
13c2ab3A_



13.8 83
PDB header:rna binding protein
Chain: A: PDB Molecule:znf29;
PDBTitle: solution structures and characterization of hiv rre iib rna2 targeting zinc finger proteins
14c6bzsA_



13.7 13
PDB header:transport protein
Chain: A: PDB Molecule:multidrug resistance-associated protein 6;
PDBTitle: human abcc6 nbd1 in apo state
15d1aaya1



13.3 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
16d1a1ga1



12.9 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
17d1ubdc3



12.8 43
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
18c1gxsC_



12.6 19
PDB header:lyase
Chain: C: PDB Molecule:p-(s)-hydroxymandelonitrile lyase chain a;
PDBTitle: crystal structure of hydroxynitrile lyase from sorghum2 bicolor in complex with inhibitor benzoic acid: a novel3 cyanogenic enzyme
19d1u86a1



12.3 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
20d1a1ha1



12.2 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
21c4imhA_



not modelled 12.1 20
PDB header:metal transport, transport protein
Chain: A: PDB Molecule:hemin degrading factor;
PDBTitle: crystal structure of cytoplasmic heme binding protein, phus, from2 pseudomonas aeruginosa
22d2hq2a1



not modelled 12.0 23
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
23d1f2ig1



not modelled 11.6 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
24d1tf3a2



not modelled 11.1 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
25c2kvfA_



not modelled 11.1 30
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
26d2glia3



not modelled 10.8 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
27c4z4pA_



not modelled 10.4 32
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase 2d;
PDBTitle: structure of the mll4 set domain
28d2j0pa1



not modelled 10.1 20
Fold:Heme iron utilization protein-like
Superfamily:Heme iron utilization protein-like
Family:HemS/ChuS-like
29c4ox3A_



not modelled 10.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxypeptidase yodj;
PDBTitle: structure of the ldcb ld-carboxypeptidase reveals the molecular basis2 of peptidoglycan recognition
30d2cy5a1



not modelled 9.9 22
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Phosphotyrosine-binding domain (PTB)
31c3tsjA_



not modelled 9.8 18
PDB header:allergen, oxidoreductase
Chain: A: PDB Molecule:pollen allergen phl p 4;
PDBTitle: crystal structure of phl p 4, a grass pollen allergen with glucose2 dehydrogenase activity
32d2yt9a1



not modelled 9.6 43
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33c6n2gC_



not modelled 9.1 10
PDB header:chaperone
Chain: C: PDB Molecule:nucleosome assembly protein;
PDBTitle: crystal structure of caenorhabditis elegans nap1
34d1ncsa_



not modelled 8.7 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
35d2dlka2



not modelled 8.5 86
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36c3qkgA_



not modelled 8.4 15
PDB header:immune system
Chain: A: PDB Molecule:protein ambp;
PDBTitle: crystal structure of alpha-1-microglobulin at 2.3 a resolution
37c2kdxA_



not modelled 8.4 18
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
38d1x6ea2



not modelled 8.1 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39c5b3hC_



not modelled 8.0 50
PDB header:transcription
Chain: C: PDB Molecule:zinc finger protein jackdaw;
PDBTitle: the crystal structure of the jackdaw/idd10 bound to the heterodimeric2 shr-scr complex
40c3pm7A_



not modelled 8.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184
41d2a2ua_



not modelled 8.0 15
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
42c2nq2C_



not modelled 7.8 11
PDB header:metal transport
Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
43c5zet2_



not modelled 7.7 71
PDB header:ribosome
Chain: 2: PDB Molecule:50s ribosomal protein l31;
PDBTitle: m. smegmatis p/p state 50s ribosomal subunit
44c1bcrA_



not modelled 7.6 21
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:serine carboxypeptidase ii;
PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature
45c4az3A_



not modelled 7.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal protective protein 32 kda chain;
PDBTitle: crystal structure of cathepsin a, complexed with 15a
46c2wh44_



not modelled 7.5 60
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome
47c5gplA_



not modelled 7.3 19
PDB header:chaperone
Chain: A: PDB Molecule:putative nucleosome assembly protein c36b7.08c;
PDBTitle: crystal structure of ccp1
48d1vsra_



not modelled 7.2 10
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
49c2l3aA_



not modelled 7.1 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of homodimer protein sp_0782 (7-79) from2 streptococcus pneumoniae northeast structural genomics consortium3 target spr104 .
50c1znmA_



not modelled 7.1 43
PDB header:zinc finger
Chain: A: PDB Molecule:yy1;
PDBTitle: a zinc finger with an artificial beta-turn, original sequence taken2 from the third zinc finger domain of the human transcriptional3 repressor protein yy1 (ying and yang 1, a delta transcription4 factor), nmr, 34 structures
51c3a44D_



not modelled 7.0 17
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
52c3c3jA_



not modelled 6.8 25
PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli
53c3f1f4_



not modelled 6.8 60
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of a translation termination complex formed with2 release factor rf2. this file contains the 50s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes as4 described in remark 400.
54c5ghrA_



not modelled 6.8 23
PDB header:dna binding protein/replication
Chain: A: PDB Molecule:ssdna-specific exonuclease;
PDBTitle: dna replication protein
55d1jzua_



not modelled 6.7 18
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
56c2yujA_



not modelled 6.7 20
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin fusion degradation 1-like;
PDBTitle: solution structure of human ubiquitin fusion degradation2 protein 1 homolog ufd1
57c1va1A_



not modelled 6.7 29
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
58c4lrvL_



not modelled 6.6 21
PDB header:dna binding protein
Chain: L: PDB Molecule:dna sulfur modification protein dnde;
PDBTitle: crystal structure of dnde from escherichia coli b7a involved in dna2 phosphorothioation modification
59c5o60g_



not modelled 6.6 71
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
60c3h5jA_



not modelled 6.5 40
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: leud_1-168 small subunit of isopropylmalate isomerase (rv2987c) from2 mycobacterium tuberculosis
61c6avjB_



not modelled 6.3 15
PDB header:metal binding protein
Chain: B: PDB Molecule:cdgsh iron-sulfur domain-containing protein 3,
PDBTitle: crystal structure of human mitochondrial inner neet protein (mint)2 /cisd3
62c3a0rA_



not modelled 6.2 14
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
63c3q3wB_



not modelled 6.2 40
PDB header:transferase
Chain: B: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: isopropylmalate isomerase small subunit from campylobacter jejuni.
64c2hcuA_



not modelled 6.2 40
PDB header:lyase
Chain: A: PDB Molecule:3-isopropylmalate dehydratase small subunit;
PDBTitle: crystal structure of smu.1381 (or leud) from streptococcus mutans
65c1t2yA_



not modelled 6.0 36
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein;
PDBTitle: nmr solution structure of the protein part of cu6-2 neurospora crassa mt
66d2cota1



not modelled 6.0 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
67d1r44a_



not modelled 5.9 12
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanX-like
68d1znda1



not modelled 5.9 12
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
69c3odpA_



not modelled 5.8 25
PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution
70d1gq2a2



not modelled 5.8 14
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Malic enzyme N-domain
71c2j034_



not modelled 5.6 43
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii.
72d2j0141



not modelled 5.6 43
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
73d2h85a2



not modelled 5.6 29
Fold:EndoU-like
Superfamily:EndoU-like
Family:Nsp15 C-terminal domain-like
74d1vmha_



not modelled 5.5 14
Fold:YjbQ-like
Superfamily:YjbQ-like
Family:YjbQ-like
75d1wmia1



not modelled 5.5 20
Fold:RelE-like
Superfamily:RelE-like
Family:RelE-like
76c6b3qa_



not modelled 5.5 75
PDB header:hydrolase/hormone
Chain: A: PDB Molecule:insulin-degrading enzyme;
PDBTitle: cryo-em structure of human insulin degrading enzyme in complex with2 insulin
77c3hlzA_



not modelled 5.4 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bt_1490;
PDBTitle: crystal structure of bt_1490 (np_810393.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.50 a resolution
78d1ivya_



not modelled 5.4 16
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Serine carboxypeptidase-like
79c5hnmC_



not modelled 5.4 16
PDB header:hydrolase
Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase;
PDBTitle: crystal structure of vancomycin resistance d,d-pentapeptidase vany2 e175a mutant from vanb-type resistance cassette in complex with3 zn(ii)
80d2cota2



not modelled 5.3 67
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
81c4f7uP_



not modelled 5.3 11
PDB header:splicing
Chain: P: PDB Molecule:methylosome subunit picln;
PDBTitle: the 6s snrnp assembly intermediate
82c3vbaE_



not modelled 5.3 60
PDB header:lyase
Chain: E: PDB Molecule:isopropylmalate/citramalate isomerase small subunit;
PDBTitle: crystal structure of methanogen 3-isopropylmalate isomerase small2 subunit
83d1jj7a_



not modelled 5.3 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
84d2ayua1



not modelled 5.2 16
Fold:NAP-like
Superfamily:NAP-like
Family:NAP-like
85c2ayuA_



not modelled 5.2 16
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein;
PDBTitle: the structure of nucleosome assembly protein suggests a mechanism for2 histone binding and shuttling
86d2jn4a1



not modelled 5.2 12
Fold:NifT/FixU barrel-like
Superfamily:NifT/FixU-like
Family:NifT/FixU
87c2jn4A_



not modelled 5.2 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein fixu, nift;
PDBTitle: solution nmr structure of protein rp4601 from rhodopseudomonas2 palustris. northeast structural genomics consortium target rpt2;3 ontario center for structural proteomics target rp4601.
88d1p4xa1



not modelled 5.2 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
89c5vbnB_



not modelled 5.1 19
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite