Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2206_(-)_2470630_2471340
DateMon Aug 5 13:25:33 BST 2019
Unique Job ID17c62bd4601a06db
SequenceVKLLGHRKSH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.555 Y:58.661 Z:60.727
Model (left) based on template c6adqP_
Top template information
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
Confidence and coverage
Confidence: 62.8% Coverage: 21%
49 residues ( 21% of your sequence) have been modelled with 62.8% confidence by the single highest scoring template.
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Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6adqP_
62.8 14
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
2c2mfrA_
52.6 16
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
3c4hkrB_
34.9 18
PDB header:transport protein
Chain: B: PDB Molecule:calcium release-activated calcium channel protein 1;
PDBTitle: calcium release-activated calcium (crac) channel orai
4c3k07A_
31.7 20
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
5c4hkrA_
30.9 18
PDB header:transport protein
Chain: A: PDB Molecule:calcium release-activated calcium channel protein 1;
PDBTitle: calcium release-activated calcium (crac) channel orai
6c2mg2A_
29.7 15
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane protein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
7c6agfB_
23.5 12
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
8c5sv1Y_
23.5 21
PDB header:transport protein
Chain: Y: PDB Molecule:biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 4.5
9c6d79A_
22.7 20
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter cysz;
PDBTitle: structure of cysz, a sulfate permease from pseudomonas fragi
10c5x0mA_
22.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:sodium channel protein;
PDBTitle: structure of a eukaryotic voltage-gated sodium channel at near atomic2 resolution
11c5sv1Z_
21.7 21
PDB header:transport protein
Chain: Z: PDB Molecule:biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 4.5
12c4j8cA_
19.4 33
PDB header:chaperone
Chain: A: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
13c4j8cB_
19.4 33
PDB header:chaperone
Chain: B: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
14d2g1da1
18.1 30
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
15d2ffta1
17.7 29
Fold:Intrinsically disordered proteins
Superfamily:TSP9-like
Family:TSP9-like
16c5xsyB_
17.3 10
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated sodium channel beta subunit 1;
PDBTitle: structure of the nav1.4-beta1 complex from electric eel
17c4qtnB_
16.2 7
PDB header:transport protein
Chain: B: PDB Molecule:nicotinamide riboside transporter pnuc;
PDBTitle: crystal structure of the vitamin b3 transporter pnuc
18d2v1pa1
16.2 36
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
19c3izbU_
15.9 15
PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s24;
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
20d2v94a1
15.8 38
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
21c3iz6U_
not modelled 15.2 22
PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s24 (s24e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
22c6d73B_
not modelled 15.1 14
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel, subfamily m;
PDBTitle: cryo-em structure of the zebrafish trpm2 channel in the presence of2 ca2+
23c2zxeA_
not modelled 14.9 16
PDB header:hydrolase/transport protein
Chain: A: PDB Molecule:na, k-atpase alpha subunit;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
24d1oqwa_
not modelled 14.5 28
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
25c2mg3A_
not modelled 14.5 20
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the membrane2 proximal external region of hiv-1 gp41 in the presence of3 dodecylphosphocholine micelles
26c5zfuI_
not modelled 14.4 29
PDB header:transport protein
Chain: I: PDB Molecule:22-mer peptide from biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd hexameric complex (exbb6exbd3tm)
27c5zfvF_
not modelled 14.4 29
PDB header:transport protein
Chain: F: PDB Molecule:22-mer peptide from biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd pentameric complex (exbb5exbd1tm)
28c5zfuH_
not modelled 14.4 29
PDB header:transport protein
Chain: H: PDB Molecule:22-mer peptide from biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd hexameric complex (exbb6exbd3tm)
29c5zfuG_
not modelled 14.4 29
PDB header:transport protein
Chain: G: PDB Molecule:22-mer peptide from biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd hexameric complex (exbb6exbd3tm)
30c6hwhb_
not modelled 14.3 17
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
31c5v2sA_
not modelled 14.2 23
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
32c2ndjA_
not modelled 13.7 26
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
33c2mmuA_
not modelled 13.7 17
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein crga;
PDBTitle: structure of crga, a cell division structural and regulatory protein2 from mycobacterium tuberculosis, in lipid bilayers
34c4kt0F_
not modelled 13.5 35
PDB header:electron transport
Chain: F: PDB Molecule:photosystem i subunit iii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
35c2na6B_
not modelled 13.4 18
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
36c2na6A_
not modelled 13.4 18
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
37c2na6C_
not modelled 13.4 18
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
38c4ye7A_
not modelled 13.3 33
PDB header:viral protein
Chain: A: PDB Molecule:orf22 similar to xcgv orf19;
PDBTitle: n-terminal domain of orf22, a cydia pomonella granulovirus envelope2 protein
39d1neea1
not modelled 13.1 21
Fold:Ribosome binding domain-like
Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
40c2kglA_
not modelled 12.9 32
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesd
41c6d6tE_
not modelled 12.6 7
PDB header:transport protein
Chain: E: PDB Molecule:human gaba-a receptor subunit gamma-2;
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation b
42c5gapG_
not modelled 12.4 15
PDB header:transcription
Chain: G: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: body region of the u4/u6.u5 tri-snrnp
43c4xtrG_
not modelled 12.2 21
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:pep12p;
PDBTitle: structure of get3 bound to the transmembrane domain of pep12
44c3icoA_
not modelled 12.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from mycobacterium2 tuberculosis
45d1jb0f_
not modelled 11.8 35
Fold:Single transmembrane helix
Superfamily:Subunit III of photosystem I reaction centre, PsaF
Family:Subunit III of photosystem I reaction centre, PsaF
46c3cssA_
not modelled 11.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:6-phosphogluconolactonase;
PDBTitle: crystal structure of 6-phosphogluconolactonase from leishmania2 guyanensis
47c5zx5D_
not modelled 11.8 14
PDB header:transferase
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.3 angstrom structure of mouse trpm7 with edta
48c1iijA_
not modelled 11.3 21
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
49c5hvdA_
not modelled 11.3 17
PDB header:transport protein
Chain: A: PDB Molecule:ion transport protein;
PDBTitle: full length open-form sodium channel navms i218c
50c4qndA_
not modelled 11.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:chemical transport protein;
PDBTitle: crystal structure of a semisweet
51c3sokB_
not modelled 11.2 24
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
52c2m7gA_
not modelled 10.9 25
PDB header:cell adhesion, structural protein, elect
Chain: A: PDB Molecule:geopilin domain 1 protein;
PDBTitle: structure of the type iva major pilin from the electrically conductive2 bacterial nanowires of geobacter sulfurreducens
53d1mnna_
not modelled 10.9 36
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:DNA-binding domain from NDT80
54c2euzA_
not modelled 10.9 36
PDB header:cell cycle/dna
Chain: A: PDB Molecule:ndt80 protein;
PDBTitle: structure of a ndt80-dna complex (mse mutant mc5t)
55d1q90d_
not modelled 10.8 25
Fold:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
56c6drkD_
not modelled 10.8 14
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel, subfamily m,
PDBTitle: structure of trpm2 ion channel receptor by single particle electron2 cryo-microscopy, apo state
57c6m97A_
not modelled 10.8 14
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
58c3u5cY_
not modelled 10.7 11
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
59c3j3aY_
not modelled 10.5 22
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: structure of the human 40s ribosomal proteins
60c3j60Y_
not modelled 10.3 22
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24e;
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
61c6gwsE_
not modelled 10.3 100
PDB header:replication
Chain: E: PDB Molecule:pcna-associated factor;
PDBTitle: crystal structure of human pcna in complex with three p15 peptides
62c6gwsD_
not modelled 10.3 100
PDB header:replication
Chain: D: PDB Molecule:pcna-associated factor;
PDBTitle: crystal structure of human pcna in complex with three p15 peptides
63c5xxuY_
not modelled 10.2 11
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein es24;
PDBTitle: small subunit of toxoplasma gondii ribosome
64c4y3uB_
not modelled 10.2 32
PDB header:membrane protein
Chain: B: PDB Molecule:cardiac phospholamban;
PDBTitle: the structure of phospholamban bound to the calcium pump serca1a
65c4mt1A_
not modelled 9.9 12
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
66c2xzmP_
not modelled 9.8 22
PDB header:ribosome
Chain: P: PDB Molecule:rps24e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
67c2ezdA_
not modelled 9.5 100
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:high mobility group protein hmg-i/hmg-y;
PDBTitle: solution structure of a complex of the second dna binding2 domain of human hmg-i(y) bound to dna dodecamer containing3 the prdii site of the interferon-beta promoter, nmr,4 minimized average structure
68c4d2gD_
not modelled 9.5 100
PDB header:transcription
Chain: D: PDB Molecule:p15;
PDBTitle: crystal structure of human pcna in complex with p15 peptide
69c4d2gE_
not modelled 9.5 100
PDB header:transcription
Chain: E: PDB Molecule:p15;
PDBTitle: crystal structure of human pcna in complex with p15 peptide
70c5zx9A_
not modelled 9.5 25
PDB header:protein binding
Chain: A: PDB Molecule:alanine and proline-rich secreted protein apa;
PDBTitle: crystal structure of a protein from mycobacterium
71c1oy8A_
not modelled 9.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
72d2f6mb1
not modelled 9.4 27
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
73d1v74b_
not modelled 9.3 7
Fold:Four-helical up-and-down bundle
Superfamily:Colicin D immunity protein
Family:Colicin D immunity protein
74c2n2aA_
not modelled 9.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
75c1xl6B_
not modelled 9.2 14
PDB header:metal transport
Chain: B: PDB Molecule:inward rectifier potassium channel;
PDBTitle: intermediate gating structure 2 of the inwardly rectifying k+ channel2 kirbac3.1
76d1ywxa1
not modelled 9.1 20
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
77c4gn0D_
not modelled 9.0 19
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
78c6fddC_
not modelled 9.0 12
PDB header:structural protein
Chain: C: PDB Molecule:whirlin;
PDBTitle: crystal structure of the hhd2 domain of whirlin
79c2ezeA_
not modelled 8.9 100
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:high mobility group protein hmg-i/hmg-y;
PDBTitle: solution structure of a complex of the second dna binding2 domain of human hmg-i(y) bound to dna dodecamer containing3 the prdii site of the interferon-beta promoter, nmr, 354 structures
80c6ehtE_
not modelled 8.9 100
PDB header:dna binding protein
Chain: E: PDB Molecule:pcna-associated factor;
PDBTitle: modulation of pcna sliding surface by p15paf suggests a suppressive2 mechanism for cisplatin-induced dna lesion bypass by pol eta3 holoenzyme
81c5ghwP_
not modelled 8.8 17
PDB header:immune system
Chain: P: PDB Molecule:endogenous retrovirus group k member 8 env polyprotein;
PDBTitle: crystal structure of broad neutralizing antibody 10e8 with long2 epitope bound
82c3jcmK_
not modelled 8.8 15
PDB header:transcription
Chain: K: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: cryo-em structure of the spliceosomal u4/u6.u5 tri-snrnp
83c2cazB_
not modelled 8.7 27
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein vps28;
PDBTitle: escrt-i core
84d2cazb1
not modelled 8.7 27
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS28 N-terminal domain
85c6agfA_
not modelled 8.7 12
PDB header:membrane protein
Chain: A: PDB Molecule:sodium channel protein type 4 subunit alpha;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
86c6ehtD_
not modelled 8.5 100
PDB header:dna binding protein
Chain: D: PDB Molecule:pcna-associated factor;
PDBTitle: modulation of pcna sliding surface by p15paf suggests a suppressive2 mechanism for cisplatin-induced dna lesion bypass by pol eta3 holoenzyme
87c5tbfB_
not modelled 8.4 44
PDB header:translation
Chain: B: PDB Molecule:translation elongation factor;
PDBTitle: crystal structure of semet derivatives of domain2 and domain 3 of rctb
88c6fosF_
not modelled 8.3 25
PDB header:photosynthesis
Chain: F: PDB Molecule:photosystem i reaction center subunit ii;
PDBTitle: cyanidioschyzon merolae photosystem i
89c5ir6C_
not modelled 8.0 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
90c3eamB_
not modelled 7.8 11
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:glr4197 protein;
PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel
91c5ubfB_
not modelled 7.8 44
PDB header:dna binding protein
Chain: B: PDB Molecule:rctb replication initiator protein;
PDBTitle: crystal structure of the rctb domains 2-3, rctb-155-483
92c4pguA_
not modelled 7.6 11
PDB header:membrance protein
Chain: A: PDB Molecule:uncharacterized protein yetj;
PDBTitle: crystal structure of yetj from bacillus subtilis at ph 7 by soaking
93c4zyaA_
not modelled 7.5 63
PDB header:ligase
Chain: A: PDB Molecule:asparagine--trna ligase, cytoplasmic;
PDBTitle: the n-terminal extension domain of human asparaginyl-trna synthetase
94c2l6wB_
not modelled 7.4 22
PDB header:membrane protein
Chain: B: PDB Molecule:beta-type platelet-derived growth factor receptor;
PDBTitle: pdgfr beta-tm
95c6c9aB_
not modelled 7.4 19
PDB header:membrane protein
Chain: B: PDB Molecule:two pore calcium channel protein 1;
PDBTitle: cryo-em structure of mouse tpc1 channel in the ptdins(3,5)p2-bound2 state
96c5doqC_
not modelled 7.2 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
97c2k21A_
not modelled 7.2 11
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
98c5xyiY_
not modelled 7.2 38
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein s24e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
99c5m73D_
not modelled 7.1 44
PDB header:rna binding protein
Chain: D: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below