Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2208_(cobS)_2472501_2473250
DateMon Aug 5 13:25:33 BST 2019
Unique Job IDac5064bbf28fc0b3
SequenceVMRSLATAFA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.282 Y:13.905 Z:14.972
Model (left) based on template c1m0fB_
Top template information
PDB header:virus
Chain: B: PDB Molecule:scaffolding protein b;
PDBTitle: structural studies of bacteriophage alpha3 assembly, cryo-electron2 microscopy
Confidence and coverage
Confidence: 31.9% Coverage: 6%
14 residues ( 6% of your sequence) have been modelled with 31.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1m0fB_



31.9 50
PDB header:virus
Chain: B: PDB Molecule:scaffolding protein b;
PDBTitle: structural studies of bacteriophage alpha3 assembly, cryo-electron2 microscopy
2c2v1sD_



24.0 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:mitochondrial import receptor subunit tom20 homolog;
PDBTitle: crystal structure of rat tom20-aldh presequence complex
3d1om2a_



16.8 24
Fold:Open three-helical up-and-down bundle
Superfamily:Mitochondrial import receptor subunit Tom20
Family:Mitochondrial import receptor subunit Tom20
4d1pvga1



16.1 30
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
5d2d6fc1



13.1 36
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
6c5z7cA_



11.1 30
PDB header:metal binding protein
Chain: A: PDB Molecule:3'3'-cgamp-specific phosphodiesterase 3;
PDBTitle: crystal structure of cyclic gmp-amp specifc phosphodiesterases in2 v.cholerae (v-cgap3)
7d1otfa_



10.3 6
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
8d1kija1



9.9 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
9d1s16a1



9.6 30
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
10d1ei1a1



9.5 30
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:DNA gyrase/MutL, second domain
11c5k8zB_



9.3 6
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorite dismutase;
PDBTitle: crystal structure of dimeric chlorite dismutase from cyanothece sp.2 pcc7425 (ph 8.5)
12c6bd4A_



8.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:frizzled-4/rubredoxin chimeric protein;
PDBTitle: crystal structure of human apo-frizzled4 receptor
13d1ckqa_



8.3 20
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease EcoRI
14c4r8zB_



7.5 21
PDB header:hydrolase
Chain: B: PDB Molecule:cyclic di-gmp phosphodiesterase;
PDBTitle: crystal structure of pa4781 hd-gyp domain from pseudomonas aeruginosa2 at 2.2a resolution showing a bi-metallic ni ion center
15c5d92B_



7.4 17
PDB header:membrane protein
Chain: B: PDB Molecule:af2299 protein,phosphatidylinositol synthase;
PDBTitle: structure of a phosphatidylinositolphosphate (pip) synthase from2 renibacterium salmoninarum
16c4fazB_



7.3 19
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate isomerase protein;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
17d1bjpa_



6.9 6
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
18c3ry0A_



6.5 25
PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
19c4o6mA_



6.0 13
PDB header:transferase
Chain: A: PDB Molecule:af2299, a cdp-alcohol phosphotransferase;
PDBTitle: structure of af2299, a cdp-alcohol phosphotransferase (cmp-bound)
20c4ef4B_



5.9 5
PDB header:immune system
Chain: B: PDB Molecule:transmembrane protein 173;
PDBTitle: crystal structure of sting ctd complex with c-di-gmp
21c2llwA_



not modelled 5.9 21
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein sti1;
PDBTitle: solution structure of the yeast sti1 dp2 domain
22c4fdxB_



not modelled 5.7 6
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
23d1aqaa_



not modelled 5.4 16
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
24c2op8A_



not modelled 5.4 0
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below