Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2211c_(gcvT)_2476050_2477189
DateMon Aug 5 13:25:34 BST 2019
Unique Job IDe5d2ec54856bf9bb
SequenceVCQQGRPLGW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.307 Y:59.392 Z:55.501
Model (left) based on template c4p9sA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethylglycine dehydrogenase;
PDBTitle: crystal structure of the mature form of rat dmgdh
Confidence and coverage
Confidence:100.0% Coverage: 97%
368 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4p9sA_
100.0 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethylglycine dehydrogenase;
PDBTitle: crystal structure of the mature form of rat dmgdh
2c1pj6A_
100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:n,n-dimethylglycine oxidase;
PDBTitle: crystal structure of dimethylglycine oxidase of arthrobacter2 globiformis in complex with folic acid
3c1x31A_
100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
4c1v5vA_
100.0 36
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
5c1yx2B_
100.0 40
PDB header:transferase
Chain: B: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of the probable aminomethyltransferase2 from bacillus subtilis
6c1worA_
100.0 39
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of t-protein of the glycine cleavage2 system
7c3girA_
100.0 32
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of glycine cleavage system2 aminomethyltransferase t from bartonella henselae
8c1wsrA_
100.0 29
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of human t-protein of glycine cleavage2 system
9c3tfhB_
100.0 19
PDB header:transferase
Chain: B: PDB Molecule:gcvt-like aminomethyltransferase protein;
PDBTitle: dmsp-dependent demethylase from p. ubique - apo
10c1vloA_
100.0 38
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of aminomethyltransferase (t protein;2 tetrahydrofolate-dependent) of glycine cleavage system (np417381)3 from escherichia coli k12 at 1.70 a resolution
11c5tl4C_
100.0 23
PDB header:transferase
Chain: C: PDB Molecule:vanillate/3-o-methylgallate o-demethylase;
PDBTitle: crystal structure of sphingomonas paucimobilis aryl o-demethylase ligm
12d1pj5a4
100.0 31
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
13d1v5va2
100.0 36
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
14d1wosa2
100.0 39
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
15d1vloa2
100.0 38
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
16c1vlyA_
100.0 14
PDB header:transferase
Chain: A: PDB Molecule:unknown protein from 2d-page;
PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution
17c5oliA_
100.0 24
PDB header:protein binding
Chain: A: PDB Molecule:putative transferase caf17, mitochondrial;
PDBTitle: crystal structure of human iba57
18d1vlya2
100.0 14
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
19c2gagC_
100.0 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:heterotetrameric sarcosine oxidase gamma-subunit;
PDBTitle: heteroteterameric sarcosine: structure of a diflavin metaloenzyme at2 1.85 a resolution
20d1v5va1
99.9 38
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
21d1wosa1
not modelled 99.8 40
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
22d1pj5a1
not modelled 99.8 23
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
23c6ahrB_
not modelled 99.8 25
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop1;
PDBTitle: cryo-em structure of human ribonuclease p
24d1vloa1
not modelled 99.8 41
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
25c6ah3B_
not modelled 99.7 21
PDB header:hydrolase/rna
Chain: B: PDB Molecule:ribonucleases p/mrp protein subunit pop1;
PDBTitle: cryo-em structure of yeast ribonuclease p with pre-trna substrate
26d1vlya1
not modelled 96.2 15
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
27c1xzqA_
not modelled 95.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
28c3geiB_
not modelled 95.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
29c1xzqB_
not modelled 93.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
30c3gehA_
not modelled 92.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
31d1xzpa3
not modelled 92.6 20
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:TrmE formyl-THF-binding domain
32c5uvnB_
not modelled 85.5 18
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
33c5uvnC_
not modelled 85.5 18
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
34c5uvnD_
not modelled 85.5 18
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
35c5uvnA_
not modelled 85.5 18
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
36c5uvnF_
not modelled 85.5 18
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
37c5uvnE_
not modelled 85.5 18
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
38c5uw8C_
not modelled 68.5 15
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
39c2nyiB_
not modelled 49.3 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:unknown protein;
PDBTitle: crystal structure of an unknown protein from galdieria sulphuraria
40c1m98A_
not modelled 30.2 11
PDB header:unknown function
Chain: A: PDB Molecule:orange carotenoid protein;
PDBTitle: crystal structure of orange carotenoid protein
41d3bzka5
not modelled 25.4 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
42c3l48B_
not modelled 23.3 26
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
43c2ysrA_
not modelled 17.3 20
PDB header:signaling protein
Chain: A: PDB Molecule:dep domain-containing protein 1;
PDBTitle: solution structure of the dep domain from human dep domain-2 containing protein 1
44c3lywA_
not modelled 15.2 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ybbr family protein;
PDBTitle: crystal structure of ybbr family protein dhaf_0833 from2 desulfitobacterium hafniense dcb-2. northeast structural3 genomics consortium target id dhr29b
45c6ic4C_
not modelled 14.4 17
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
46c5d5pC_
not modelled 13.4 22
PDB header:transferase
Chain: C: PDB Molecule:hcgb;
PDBTitle: hcgb from methanococcus maripaludis
47c3k3sG_
not modelled 12.9 15
PDB header:hydrolase
Chain: G: PDB Molecule:altronate hydrolase;
PDBTitle: crystal structure of altronate hydrolase (fragment 1-84) from shigella2 flexneri.
48d1znba_
not modelled 12.7 12
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
49c4oy2D_
not modelled 12.7 13
PDB header:transcription
Chain: D: PDB Molecule:transcription initiation factor tfiid subunit 7;
PDBTitle: crystal structure of taf1-taf7, a tfiid subcomplex
50c3brcA_
not modelled 11.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein of unknown function;
PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum
51d1w4ma_
not modelled 11.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
52c5kdjA_
not modelled 11.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:f5/8 type c domain protein;
PDBTitle: zmpb metallopeptidase from clostridium perfringens
53d1fsha_
not modelled 9.6 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
54c4c9vA_
not modelled 9.3 36
PDB header:signaling protein
Chain: A: PDB Molecule:rnf43;
PDBTitle: xenopus rnf43 ectodomain in complex with xenopus rspo2 fu1-fu2
55c3lazB_
not modelled 9.2 10
PDB header:lyase
Chain: B: PDB Molecule:d-galactarate dehydratase;
PDBTitle: the crystal structure of the n-terminal domain of d-2 galactarate dehydratase from escherichia coli cft073
56d1js8a2
not modelled 9.0 26
Fold:C-terminal domain of mollusc hemocyanin
Superfamily:C-terminal domain of mollusc hemocyanin
Family:C-terminal domain of mollusc hemocyanin
57c3jrtA_
not modelled 9.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein vpc_cass2;
PDBTitle: structure from the mobile metagenome of v. paracholerae: integron2 cassette protein vpc_cass2
58d1lnla2
not modelled 8.9 22
Fold:C-terminal domain of mollusc hemocyanin
Superfamily:C-terminal domain of mollusc hemocyanin
Family:C-terminal domain of mollusc hemocyanin
59d1iq4a_
not modelled 8.7 17
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
60c4rgwB_
not modelled 8.7 27
PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription initiation factor tfiid subunit 7;
PDBTitle: crystal structure of a taf1-taf7 complex in human transcription factor2 iid
61d1uhwa_
not modelled 8.0 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
62c6d8vA_
not modelled 7.8 18
PDB header:membrane protein
Chain: A: PDB Molecule:probable chemoreceptor (methyl-accepting chemotaxis)
PDBTitle: methyl-accepting chemotaxis protein x
63c5o60F_
not modelled 7.8 17
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l5;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
64d2zjrd1
not modelled 7.4 20
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
65d1vqod1
not modelled 7.4 27
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
66c6cd2C_
not modelled 7.4 28
PDB header:membrane protein/chaperone
Chain: C: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the papc usher bound to the chaperone-adhesin2 papd-papg
67c6exnc_
not modelled 6.8 25
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: post-catalytic p complex spliceosome with 3' splice site docked
68c1wylA_
not modelled 6.6 17
PDB header:signaling protein
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: solution structure of the ch domain of human nedd92 interacting protein with calponin homology and lim domains
69c3ny7A_
not modelled 6.5 12
PDB header:membrane protein
Chain: A: PDB Molecule:sulfate transporter;
PDBTitle: stas domain of ychm bound to acp
70d2z9ia2
not modelled 6.5 25
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Prokaryotic proteases
71c5ilaA_
not modelled 6.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:protease do-like 9;
PDBTitle: deg9 protease domain
72c6ncxB_
not modelled 6.4 28
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galacturonidase;
PDBTitle: crystal structure of gh2 beta-galacturonidase from eisenbergiella tayi2 bound to galacturonate
73c5z81A_
not modelled 6.2 13
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 15;
PDBTitle: trimeric structure of vibrio cholerae heat shock protein 15 at 2.32 angstrom resolution
74c2jysA_
not modelled 6.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
75d1mjia_
not modelled 6.0 17
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
76c2ly7A_
not modelled 6.0 46
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: b-flap domain of rna polymerase (b. subtilis)
77c2n9zA_
not modelled 6.0 60
PDB header:toxin
Chain: A: PDB Molecule:tau-theraphotoxin-hs1a;
PDBTitle: solution structure of k1 lobe of double-knot toxin
78d1bhga2
not modelled 5.9 17
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
79d1dm9a_
not modelled 5.9 7
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Heat shock protein 15 kD
80c1dm9A_
not modelled 5.9 7
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka intergenic
PDBTitle: heat shock protein 15 kd
81c5ym0A_
not modelled 5.8 33
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the crystal structure of dhad
82d2essa2
not modelled 5.8 9
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:Acyl-ACP thioesterase-like
83c6fu4D_
not modelled 5.8 6
PDB header:signaling protein
Chain: D: PDB Molecule:probable chemotaxis transducer;
PDBTitle: ligand binding domain (lbd) of the p. aeruginosa histamine receptor2 tlpq
84c1b4aA_
not modelled 5.7 13
PDB header:repressor
Chain: A: PDB Molecule:arginine repressor;
PDBTitle: structure of the arginine repressor from bacillus stearothermophilus
85c6iczZ_
not modelled 5.7 38
PDB header:splicing
Chain: Z: PDB Molecule:pre-mrna-splicing factor slu7;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
86d1ky9a2
not modelled 5.7 28
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Prokaryotic proteases
87c6ecaA_
not modelled 5.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: lactobacillus rhamnosus beta-glucuronidase
88d2csoa1
not modelled 5.6 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
89d1o7fa1
not modelled 5.5 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
90c6n9gB_
not modelled 5.5 13
PDB header:signaling protein
Chain: B: PDB Molecule:regulator of g-protein signaling 7;
PDBTitle: crystal structure of rgs7-gbeta5 dimer
91c4o2hB_
not modelled 5.5 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein bcam1869;
PDBTitle: crystal structure of bcam1869 protein (rsam homolog) from burkholderia2 cenocepacia
92c3cmgA_
not modelled 5.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
93c6d4oA_
not modelled 5.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: eubacterium eligens beta-glucuronidase bound to an amoxapine-2 glucuronide conjugate
94c6fxdB_
not modelled 5.3 15
PDB header:biosynthetic protein
Chain: B: PDB Molecule:mupz;
PDBTitle: crystal structure of mupz from pseudomonas fluorescens
95d2o34a1
not modelled 5.3 22
Fold:T-fold
Superfamily:ApbE-like
Family:DVU1097-like
96c2d89A_
not modelled 5.3 17
PDB header:structural protein, protein binding
Chain: A: PDB Molecule:ehbp1 protein;
PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1
97c4jklA_
not modelled 5.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of streptococcus agalactiae beta-glucuronidase in2 space group p21212
98c3fn9B_
not modelled 5.3 31
PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
99c4cucA_
not modelled 5.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: unravelling the multiple functions of the architecturally intricate2 streptococcus pneumoniae beta-galactosidase, bgaa.

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