Phyre 2 Results for RVBD2219A_(-)_2487002

Email	mdejesus@rockefeller.edu
Description	RVBD2219A_(-)_2487002_2487424
Date	Mon Aug 5 13:25:35 BST 2019
Unique Job ID	ae207d1489bfb3a6
Sequence	MTAKSPPDYP ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:24.614 Y:12.435 Z:44.734

Model (left) based on template c2wsfH_

Top template information

PDB header:photosynthesis
Chain: H: PDB Molecule:photosystem i reaction center subunit vi, chloroplastic;
PDBTitle: improved model of plant photosystem i

Confidence and coverage

Confidence:

13.5%

Coverage:

18%

25 residues ( 18% of your sequence) have been modelled with 13.5% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

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3D viewing

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Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

Domain analysis [Show]

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	T	A	K	S	P	P	D	Y	P	G	K	T	L	G	L	P	D	T	G	P	G	S	L	A	P	M	G	R	R	L	A	A	L	L	I	D	W	L	I	A	Y	G	L	A	L	L	G	V	E	F	G	V	W	S	T	P	M	L	S
Secondary structure
SS confidence
Disorder	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?	?	?		?	?		?		?																														?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	T	V	V	L	V	I	W	L	L	L	G	V	A	A	V	R	L	F	G	F	T	P	G	Q	L	M	L	G	L	V	V	V	A	V	G	G	R	R	P	V	G	I	G	R	L	V	V	R	G	L	L	I	G	L	V	V	P	P	L	F
Secondary structure
SS confidence
Disorder
Disorder confidence

	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	D	S	D	G	R	G	L	H	D	R	L	T	A	T	A	V	V	R	R
Secondary structure
SS confidence
Disorder																		?	?	?
Disorder confidence

PDB 2wsf chain H

PDB 1hyw chain A

PDB 3lw5 chain H

PDB 2o01 chain H