Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2221c_(glnE)_2489377_2492361
DateMon Aug 5 13:25:35 BST 2019
Unique Job IDba9b76ceceda5bd9
SequenceVVVTKLATQR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.399 Y:62.029 Z:83.548
Model (left) based on template c3k7dA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase
Confidence and coverage
Confidence:100.0% Coverage: 47%
466 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
637 residues ( 64%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3k7dA_
100.0 25
PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase
2c1v4aA_
100.0 25
PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: structure of the n-terminal domain of escherichia coli2 glutamine synthetase adenylyltransferase
3d1v4aa2
100.0 23
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:GlnE-like domain
4d1v4aa1
100.0 27
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:Glutamine synthase adenylyltransferase GlnE, domain 2
5d1knya2
97.0 20
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
6c1knyA_
96.5 20
PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase
7c2rffA_
96.3 15
PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase (np_343093.1)2 from sulfolobus solfataricus at 1.40 a resolution
8d1ylqa1
95.3 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
9d1no5a_
94.3 20
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
10c4cs6A_
93.7 23
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside adenyltransferase;
PDBTitle: crystal structure of aada - an aminoglycoside adenyltransferase
11d1wota_
93.5 24
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
12c3c66B_
92.8 16
PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
13d2q66a2
92.1 15
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
14c1q78A_
92.1 15
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase alpha;
PDBTitle: crystal structure of poly(a) polymerase in complex with 3'-2 datp and magnesium chloride
15d1q79a2
90.8 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
16c4ebjB_
90.5 14
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside 4'-o-adenylyltransferase ant(4')-2 iib, apo
17c3jz0B_
89.3 16
PDB header:transferase/antibiotic
Chain: B: PDB Molecule:lincosamide nucleotidyltransferase;
PDBTitle: linb complexed with clindamycin and ampcpp
18c5z4cA_
85.7 12
PDB header:transferase
Chain: A: PDB Molecule:terminal uridylyltransferase tailor;
PDBTitle: crystal structure of tailor
19d2fmpa3
78.5 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
20c4zrlA_
75.0 14
PDB header:transferase
Chain: A: PDB Molecule:poly(a) rna polymerase gld-2;
PDBTitle: structure of the non canonical poly(a) polymerase complex gld-2 - gld-2 3
21c2bcuA_
not modelled 72.3 19
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
22c4xq7A_
not modelled 68.2 8
PDB header:transferase
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase-like protein;
PDBTitle: the crystal structure of the oas-like domain (old) of human oasl
23c5w0mA_
not modelled 67.0 11
PDB header:transferase/rna
Chain: A: PDB Molecule:terminal uridylyltransferase 7;
PDBTitle: structure of human tut7 catalytic module (cm) in complex with u5 rna
24c4ep7A_
not modelled 62.0 12
PDB header:transferase
Chain: A: PDB Molecule:poly(a) rna polymerase protein cid1;
PDBTitle: functional implications from the cid1 poly(u) polymerase crystal2 structure
25c4e80B_
not modelled 61.0 13
PDB header:transferase
Chain: B: PDB Molecule:poly(a) rna polymerase protein cid1;
PDBTitle: structural basis for the activity of a cytoplasmic rna terminal u-2 transferase
26c4s3nA_
not modelled 54.8 16
PDB header:transferase/rna
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase 3;
PDBTitle: crystal structure of human oas3 domain i in complex with dsrna
27d2vana2
not modelled 54.3 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
28c2la3A_
not modelled 53.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
29c4p4oA_
not modelled 51.6 11
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
30c4uz0B_
not modelled 49.8 30
PDB header:apoptosis
Chain: B: PDB Molecule:nucleolar protein 3;
PDBTitle: crystal structure of apoptosis repressor with card (arc)
31c1sz1A_
not modelled 49.0 16
PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
32c3nybA_
not modelled 48.8 14
PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:poly(a) rna polymerase protein 2;
PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex
33c5yepA_
not modelled 46.8 17
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:toxin-antitoxin system antidote mnt family;
PDBTitle: crystal structure of so_3166-so_3165 from shewanella oneidensis
34d1jmsa4
not modelled 39.7 13
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
35c5m45K_
not modelled 38.6 25
PDB header:ligase
Chain: K: PDB Molecule:acetone carboxylase beta subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
36c1kdhA_
not modelled 35.5 18
PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
37c3fioB_
not modelled 35.4 7
PDB header:nucleotide binding protein, metal bindin
Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein
PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain
38c1x4pA_
not modelled 35.4 21
PDB header:rna binding protein
Chain: A: PDB Molecule:putative splicing factor, arginine/serine-rich
PDBTitle: solution structure of surp domain in sfrs14 protei
39d1r89a2
not modelled 33.6 14
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Archaeal tRNA CCA-adding enzyme catalytic domain
40d1vk2a_
not modelled 32.2 14
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
41c3db2C_
not modelled 32.2 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
42c1tltB_
not modelled 31.7 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase (virulence factor mvim homolog);
PDBTitle: crystal structure of a putative oxidoreductase (virulence factor mvim2 homolog)
43c5l9wb_
not modelled 29.4 13
PDB header:ligase
Chain: B: PDB Molecule:acetophenone carboxylase gamma subunit;
PDBTitle: crystal structure of the apc core complex
44d2bcqa3
not modelled 28.3 12
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
45c3o7kA_
not modelled 26.3 25
PDB header:lyase
Chain: A: PDB Molecule:ohcu decarboxylase;
PDBTitle: crystal structure of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline2 decarboxylase from klebsiella pneumoniae
46c3pq1A_
not modelled 25.9 13
PDB header:transferase
Chain: A: PDB Molecule:poly(a) rna polymerase;
PDBTitle: crystal structure of human mitochondrial poly(a) polymerase (papd1)
47c2a4aB_
not modelled 25.2 19
PDB header:lyase
Chain: B: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: deoxyribose-phosphate aldolase from p. yoelii
48c5l3xB_
not modelled 22.2 20
PDB header:transcription
Chain: B: PDB Molecule:negative elongation factor c/d;
PDBTitle: crystal structure of negative elongation factor subcomplex nelf-ac
49c2jq5A_
not modelled 22.0 17
PDB header:structural genomics
Chain: A: PDB Molecule:sec-c motif;
PDBTitle: solution structure of rpa3114, a sec-c motif containing protein from2 rhodopseudomonas palustris; northeast structural genomics consortium3 target rpt5 / ontario center for structural proteomics target rp3097
50c5l9wB_
not modelled 21.8 13
PDB header:ligase
Chain: B: PDB Molecule:acetophenone carboxylase gamma subunit;
PDBTitle: crystal structure of the apc core complex
51c3ngjC_
not modelled 21.8 20
PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 entamoeba histolytica
52d1vi7a1
not modelled 20.2 35
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:YigZ N-terminal domain-like
53c4hadD_
not modelled 19.7 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:probable oxidoreductase protein;
PDBTitle: crystal structure of probable oxidoreductase protein from rhizobium2 etli cfn 42
54c3qyqC_
not modelled 19.6 9
PDB header:lyase
Chain: C: PDB Molecule:deoxyribose-phosphate aldolase, putative;
PDBTitle: 1.8 angstrom resolution crystal structure of a putative deoxyribose-2 phosphate aldolase from toxoplasma gondii me49
55c3hiyA_
not modelled 19.4 15
PDB header:transferase
Chain: A: PDB Molecule:minor editosome-associated tutase;
PDBTitle: minor editosome-associated tutase 1 with bound utp and mg
56c3ng3A_
not modelled 19.3 37
PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde
57c6e0oA_
not modelled 19.2 16
PDB header:transferase/rna
Chain: A: PDB Molecule:cgas/dncv-like nucleotidyltransferase in e. coli homolog;
PDBTitle: structure of elizabethkingia meningoseptica cdne cyclic dinucleotide2 synthase with pppa[3'-5']pa
58c4mp6A_
not modelled 18.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative ornithine cyclodeaminase;
PDBTitle: staphyloferrin b precursor biosynthetic enzyme sbnb bound to citrate2 and nad+
59d1h6da1
not modelled 18.4 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
60d1jqra_
not modelled 18.1 26
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
61c3pq1B_
not modelled 17.9 10
PDB header:transferase
Chain: B: PDB Molecule:poly(a) rna polymerase;
PDBTitle: crystal structure of human mitochondrial poly(a) polymerase (papd1)
62c5wu6B_
not modelled 17.9 19
PDB header:transferase
Chain: B: PDB Molecule:speckle targeted pip5k1a-regulated poly(a) polymerase;
PDBTitle: crystal structure of apo human tut1, form iv
63c5a2zB_
not modelled 17.6 14
PDB header:unknown function
Chain: B: PDB Molecule:mitochondrial protein;
PDBTitle: crystal structure of mtpap in complex with gtp
64c6bqiA_
not modelled 17.6 19
PDB header:translation
Chain: A: PDB Molecule:protein impact homolog;
PDBTitle: structure of two-domain translational regulator yih1 reveals a2 possible mechanism of action
65c3ceaA_
not modelled 16.6 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution
66d2cvea1
not modelled 16.6 44
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:YigZ N-terminal domain-like
67d1f99a_
not modelled 16.3 15
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
68c8iczA_
not modelled 16.3 15
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7));
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
69d2nvwa1
not modelled 16.0 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
70c5uibA_
not modelled 15.9 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase protein;
PDBTitle: crystal structure of an oxidoreductase from agrobacterium radiobacter2 in complex with nad+, l-tartaric acid and magnesium
71c3f2eA_
not modelled 15.9 15
PDB header:viral protein
Chain: A: PDB Molecule:sirv coat protein;
PDBTitle: crystal structure of yellowstone sirv coat protein c-terminus
72c2glxD_
not modelled 15.8 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase
73d1qmga2
not modelled 15.1 42
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
74c3uuwB_
not modelled 14.9 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold
PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile.
75c3nt5B_
not modelled 14.8 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase;
PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose
76c6ajrA_
not modelled 14.5 11
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil dna glycosylase superfamily protein;
PDBTitle: complex form of uracil dna glycosylase x and uracil
77d1r8ka_
not modelled 14.3 23
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:PdxA-like
78c2q0dA_
not modelled 13.9 14
PDB header:transferase
Chain: A: PDB Molecule:rna uridylyl transferase;
PDBTitle: terminal uridylyl transferase 4 from trypanosoma brucei with bound atp
79d1p1xa_
not modelled 13.8 23
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
80c5muuI_
not modelled 13.6 17
PDB header:virus
Chain: I: PDB Molecule:major outer capsid protein;
PDBTitle: dsrna bacteriophage phi6 nucleocapsid
81c2ihmA_
not modelled 13.6 14
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
82c4zbzA_
not modelled 13.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: family 4 uracil-dna glycosylase from sulfolobus tokodaii (free form,2 x-ray wavelength=1.5418)
83d2fi0a1
not modelled 13.4 13
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
84c1evjC_
not modelled 13.1 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: crystal structure of glucose-fructose oxidoreductase (gfor)2 delta1-22 s64d
85c4xbsA_
not modelled 13.0 41
PDB header:lyase
Chain: A: PDB Molecule:deoxyribose-phosphate aldolase;
PDBTitle: 2-deoxyribose-5-phosphate aldolase mutant - e78k
86c2bn5A_
not modelled 12.8 26
PDB header:nuclear protein
Chain: A: PDB Molecule:psi;
PDBTitle: p-element somatic inhibitor protein complex with u1-70k2 proline-rich peptide
87d1phna_
not modelled 12.5 8
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
88d1jboa_
not modelled 12.2 16
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
89c2n5xA_
not modelled 12.2 50
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: c-terminal domain of cdc37 cochaperone
90c5wu5C_
not modelled 12.1 19
PDB header:transferase
Chain: C: PDB Molecule:speckle targeted pip5k1a-regulated poly(a) polymerase;
PDBTitle: crystal structure of apo human tut1, form iii
91c2ho3D_
not modelled 11.5 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
92d1cpca_
not modelled 11.1 14
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
93c3r66A_
not modelled 11.0 13
PDB header:viral protein/antiviral protein
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: crystal structure of human isg15 in complex with ns1 n-terminal region2 from influenza virus b, northeast structural genomics consortium3 target ids hx6481, hr2873, and or2
94d1xeqa1
not modelled 10.9 13
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:N-terminal, RNA-binding domain of nonstructural protein NS1
95c5e4rA_
not modelled 10.8 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: crystal structure of domain-duplicated synthetic class ii ketol-acid2 reductoisomerase 2ia_kari-dd
96c2bn6A_
not modelled 10.8 28
PDB header:nuclear protein
Chain: A: PDB Molecule:psi;
PDBTitle: p-element somatic inhibitor protein
97c5ncaA_
not modelled 10.7 33
PDB header:structural protein
Chain: A: PDB Molecule:competence protein comgc;
PDBTitle: solution structure of comgc from streptococcus pneumoniae
98d1aora1
not modelled 10.5 9
Fold:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Superfamily:Aldehyde ferredoxin oxidoreductase, C-terminal domains
Family:Aldehyde ferredoxin oxidoreductase, C-terminal domains
99c3o3nA_
not modelled 10.4 10
PDB header:lyase
Chain: A: PDB Molecule:alpha-subunit 2-hydroxyisocaproyl-coa dehydratase;
PDBTitle: (r)-2-hydroxyisocaproyl-coa dehydratase in complex with its substrate2 (r)-2-hydroxyisocaproyl-coa

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