Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2226_(-)_2498840_2500381
DateMon Aug 5 13:25:35 BST 2019
Unique Job IDb7ceca7f9b95b84a
SequenceMPVEAPRPAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.664 Y:81.243 Z:59.714
Model (left) based on template c5a61A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic triphosphatase;
PDBTitle: crystal structure of full-length e. coli ygif in complex2 with tripolyphosphate and two manganese ions.
Confidence and coverage
Confidence:100.0% Coverage: 78%
398 residues ( 78% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
508 residues ( 99%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5a61A_
100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic triphosphatase;
PDBTitle: crystal structure of full-length e. coli ygif in complex2 with tripolyphosphate and two manganese ions.
2c6rn5A_
100.0 19
PDB header:unknown function
Chain: A: PDB Molecule:chad domain protein;
PDBTitle: ppta from streptomyces chartreusis
3c3e0sA_
100.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from chlorobium2 tepidum
4c6qv5A_
100.0 22
PDB header:nuclear protein
Chain: A: PDB Molecule:chad domain;
PDBTitle: crystal structure of the chad domain from the plant ricinus communis
5c2gfgB_
99.9 19
PDB header:unknown function
Chain: B: PDB Molecule:bh2851;
PDBTitle: crystal structure of a putative adenylate cyclase (bh2851) from2 bacillus halodurans at 2.12 a resolution
6c3sy3D_
99.9 21
PDB header:lyase
Chain: D: PDB Molecule:gbaa_1210 protein;
PDBTitle: gbaa_1210 protein, a putative adenylate cyclase, from bacillus2 anthracis
7d2jmua1
99.8 21
Fold:CYTH-like phosphatases
Superfamily:CYTH-like phosphatases
Family:CYTH domain
8c3v85A_
99.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:cyth-like phosphatase;
PDBTitle: 1.9 angstrom resolution crystal structure of the protein q9siy3 from2 arabidopsis thaliana
9c2fjtA_
99.7 16
PDB header:lyase
Chain: A: PDB Molecule:adenylyl cyclase class iv;
PDBTitle: adenylyl cyclase class iv from yersinia pestis
10d2acaa1
99.7 15
Fold:CYTH-like phosphatases
Superfamily:CYTH-like phosphatases
Family:CYTH domain
11c2dc4A_
99.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:165aa long hypothetical protein;
PDBTitle: structure of ph1012 protein from pyrococcus horikoshii ot3
12d1yema_
99.5 18
Fold:CYTH-like phosphatases
Superfamily:CYTH-like phosphatases
Family:CYTH domain
13c2eenA_
99.4 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1819;
PDBTitle: structure of ph1819 protein from pyrococcus horikoshii ot3
14c3g3rA_
97.2 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:vacuolar transporter chaperone 4;
PDBTitle: crystal structure of a eukaryotic polyphosphate polymerase2 in complex with appnhp-mn2+
15d2fbla1
97.1 25
Fold:CYTH-like phosphatases
Superfamily:CYTH-like phosphatases
Family:CYTH domain
16c3g3oA_
96.6 22
PDB header:biosynthetic protein
Chain: A: PDB Molecule:vacuolar transporter chaperone 2;
PDBTitle: crystal structure of the cytoplasmic tunnel domain in yeast2 vtc2p
17c5iiqA_
96.3 19
PDB header:transferase
Chain: A: PDB Molecule:vacuolar transporter chaperone 4;
PDBTitle: structure of the spx-ttm domain fragment of the yeast inorganic2 polyphophate polymerase vtc4 (form b).
18c3oq0D_
26.3 43
PDB header:cell cycle
Chain: D: PDB Molecule:dbf4;
PDBTitle: crystal structure of motif n of saccharomyces cerevisiae dbf4
19c5utvA_
18.9 55
PDB header:viral protein
Chain: A: PDB Molecule:papain-like proteinase;
PDBTitle: sars-unique fold in the rousettus bat coronavirus hku9
20d2es7a1
14.9 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
21c6g2jY_
not modelled 14.3 33
PDB header:oxidoreductase
Chain: Y: PDB Molecule:mcg5603;
PDBTitle: mouse mitochondrial complex i in the active state
22c3dboA_
not modelled 13.6 18
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
23d1jh6a_
not modelled 13.5 16
Fold:LigT-like
Superfamily:LigT-like
Family:tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
24c5d55A_
not modelled 13.4 23
PDB header:cell adhesion
Chain: A: PDB Molecule:hdab,hdaa (adhesin), hus-associated diffuse adherence;
PDBTitle: crystal structure of the e. coli hda pilus minor tip subunit, hdab
25c4q88B_
not modelled 12.7 30
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: glycosyl hydrolase family 88 from bacteroides vulgatus
26c3f3bA_
not modelled 12.7 67
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phage-like element pbsx protein xkdh;
PDBTitle: structure of the phage-like element pbsx protein xkdh from bacillus2 subtilus. northeast structural genomics consortium target sr352.
27c5tv7A_
not modelled 12.5 8
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidoglycan-binding/hydrolysing protein;
PDBTitle: 2.05 angstrom resolution crystal structure of peptidoglycan-binding2 protein from clostridioides difficile in complex with glutamine3 hydroxamate.
28c6ntwA_
not modelled 12.3 15
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:probable l,d-transpeptidase ycbb;
PDBTitle: crystal structure of e. coli ycbb
29c5y2vA_
not modelled 12.2 26
PDB header:transcription
Chain: A: PDB Molecule:rubisco operon transcriptional regulator;
PDBTitle: strcutrue of the full-length ccmr complexed with 2-og from2 synechocystis pcc6803
30d1lk3a_
not modelled 11.9 9
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
31d1vlka_
not modelled 11.3 8
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Interferons/interleukin-10 (IL-10)
32c3f1iH_
not modelled 11.1 17
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
33c2ymbB_
not modelled 11.0 19
PDB header:protein transport
Chain: B: PDB Molecule:mit domain-containing protein 1;
PDBTitle: structures of mitd1
34c5noaA_
not modelled 10.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:family 88 glycosyl hydrolase;
PDBTitle: polysaccharide lyase baccell_00875
35c3fbiC_
not modelled 10.6 0
PDB header:transcription
Chain: C: PDB Molecule:mediator of rna polymerase ii transcription
PDBTitle: structure of the mediator submodule med7n/31
36c5wfbB_
not modelled 10.6 9
PDB header:protein transport
Chain: B: PDB Molecule:ap-4 complex accessory subunit tepsin;
PDBTitle: tepsin tenth domain 1-136.
37d1ka5a_
not modelled 10.4 15
Fold:HPr-like
Superfamily:HPr-like
Family:HPr-like
38c2zw2B_
not modelled 10.1 13
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein sts178;
PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs)
39c6q2zB_
not modelled 9.4 22
PDB header:unknown function
Chain: B: PDB Molecule:upf0339 family protein;
PDBTitle: nmr solution structure of the hvo_2922 protein from haloferax volcanii
40c5lopC_
not modelled 9.4 30
PDB header:rna binding protein
Chain: C: PDB Molecule:klla0a11308p;
PDBTitle: structure of the active form of /k. lactis/ dcp1-dcp2-edc3 decapping2 complex bound to m7gdp
41d2jeka1
not modelled 9.4 8
Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
42c1fftG_
not modelled 9.2 18
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
43d1qr5a_
not modelled 9.1 13
Fold:HPr-like
Superfamily:HPr-like
Family:HPr-like
44c3k11A_
not modelled 9.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosyl hydrolase;
PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution
45d1zsqa2
not modelled 9.0 26
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Myotubularin-like phosphatases
46d2nzul1
not modelled 8.9 15
Fold:HPr-like
Superfamily:HPr-like
Family:HPr-like
47c5ldwY_
not modelled 8.9 50
PDB header:oxidoreductase
Chain: Y: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
48c3r1fO_
not modelled 8.7 18
PDB header:transcription
Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis
49c2y9xG_
not modelled 8.5 33
PDB header:oxidoreductase
Chain: G: PDB Molecule:lectin-like fold protein;
PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone
50c1rijA_
not modelled 8.4 50
PDB header:de novo protein
Chain: A: PDB Molecule:e6apn1 peptide;
PDBTitle: e6-bind trp-cage (e6apn1)
51c2dcpA_
not modelled 8.4 17
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein (rafl09-17-b18);
PDBTitle: fully automated nmr structure determination of the enth-vhs2 domain at3g16270 from arabidopsis thaliana
52c2eqeA_
not modelled 8.4 71
PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: solution structure of the fourth a20-type zinc finger2 domain from human tumor necrosis factor, alpha-induced3 protein3
53c6eyvB_
not modelled 8.3 39
PDB header:oxidoreductase
Chain: B: PDB Molecule:pvdp;
PDBTitle: crystal structure of the pyoverdine maturation protein pvdp in complex2 with the mock substrates l-tyrosine and zinc.
54c5losA_
not modelled 8.2 39
PDB header:metal binding protein
Chain: A: PDB Molecule:piin_05872;
PDBTitle: piriformospora indica piin_05872
55c2yomA_
not modelled 8.2 40
PDB header:signaling protein
Chain: A: PDB Molecule:sensory box protein;
PDBTitle: solution nmr structure of the c-terminal extension of two bacterial2 light, oxygen, voltage (lov) photoreceptor proteins from3 pseudomonas putida
56c2hw2A_
not modelled 8.2 19
PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in complex with2 rifampin
57d1ptfa_
not modelled 8.0 23
Fold:HPr-like
Superfamily:HPr-like
Family:HPr-like
58c4njcE_
not modelled 8.0 6
PDB header:transcription
Chain: E: PDB Molecule:geobacillus stearothermophilus ykzg;
PDBTitle: rna polymerase interacting protein ykzg from geobacillus2 stearothermophilus
59c4g4mB_
not modelled 7.9 33
PDB header:de novo protein
Chain: B: PDB Molecule:alpha4f3(6-13);
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3(6-13)
60c4g4mA_
not modelled 7.9 33
PDB header:de novo protein
Chain: A: PDB Molecule:alpha4f3(6-13);
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3(6-13)
61c4hitD_
not modelled 7.7 17
PDB header:viral protein
Chain: D: PDB Molecule:matrix protein;
PDBTitle: crystal structure of h112w mutant of borna disease virus matrix2 protein
62c6aafB_
not modelled 7.7 50
PDB header:membrane protein
Chain: B: PDB Molecule:transmembrane protein 184 homolog c30d11.06c;
PDBTitle: crystal structure of fission yeast atg8 complexed with the helical aim2 of hfl1.
63c4xaiP_
not modelled 7.7 50
PDB header:transcription
Chain: P: PDB Molecule:grunge, isoform j;
PDBTitle: crystal structure of red flour beetle nr2e1/tlx
64c2w0cC_
not modelled 7.7 23
PDB header:virus
Chain: C: PDB Molecule:major capsid protein p2;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
65c2kfsA_
not modelled 7.7 11
PDB header:dna-binding protein
Chain: A: PDB Molecule:conserved hypothetical regulatory protein;
PDBTitle: nmr structure of rv2175c
66c2ymbC_
not modelled 7.7 19
PDB header:protein transport
Chain: C: PDB Molecule:mit domain-containing protein 1;
PDBTitle: structures of mitd1
67c4y7iB_
not modelled 7.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:myotubularin-related protein 8;
PDBTitle: crystal structure of mtmr8
68c4kxrC_
not modelled 7.6 10
PDB header:protein transport
Chain: C: PDB Molecule:espg5;
PDBTitle: structure of the mycobacterium tuberculosis type vii secretion system2 chaperone espg5 in complex with pe25-ppe41 dimer
69c5zjiH_
not modelled 7.6 44
PDB header:membrane protein
Chain: H: PDB Molecule:photosystem i reaction center subunit vi, chloroplastic;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
70d1hvxa1
not modelled 7.5 33
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
71d1pp0a_
not modelled 7.5 19
Fold:CytB endotoxin-like
Superfamily:CytB endotoxin-like
Family:CytB endotoxin-like
72c3mhvA_
not modelled 7.5 20
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein vta1;
PDBTitle: crystal structure of vps4 and vta1
73d1y0ya2
not modelled 7.5 21
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
74d1v4aa1
not modelled 7.5 11
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:Glutamine synthase adenylyltransferase GlnE, domain 2
75c3pmmA_
not modelled 7.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578
76c3f7jB_
not modelled 7.4 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:yvgn protein;
PDBTitle: b.subtilis yvgn
77c3u5eP_
not modelled 7.4 24
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
78c3ihsB_
not modelled 7.4 23
PDB header:transport protein
Chain: B: PDB Molecule:phosphocarrier protein hpr;
PDBTitle: crystal structure of a phosphocarrier protein hpr from2 bacillus anthracis str. ames
79c4dguB_
not modelled 7.3 25
PDB header:cell adhesion
Chain: B: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bt0320) from2 bacteroides thetaiotaomicron vpi-5482 at 2.37 a resolution
80c3jywN_
not modelled 7.3 24
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
81c3ln3A_
not modelled 7.3 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodiol dehydrogenase;
PDBTitle: crystal structure of putative reductase (np_038806.2) from mus2 musculus at 1.18 a resolution
82c2kdrX_
not modelled 7.3 24
PDB header:viral protein, membrane protein
Chain: X: PDB Molecule:non-structural protein 4b;
PDBTitle: solution structure of hcv ns4b(227-254)
83c5t58D_
not modelled 7.2 12
PDB header:cell cycle
Chain: D: PDB Molecule:klla0d15741p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
84c4phxE_
not modelled 7.2 17
PDB header:cell adhesion
Chain: E: PDB Molecule:protein aggb;
PDBTitle: crystal structure of aggb, the minor subunit of aggregative adherence2 fimbriae type i from the escherichia coli o4h104
85c1xu2R_
not modelled 7.2 43
PDB header:cytokine, hormone/growth factor receptor
Chain: R: PDB Molecule:tumor necrosis factor receptor superfamily member 17;
PDBTitle: the crystal structure of april bound to bcma
86d1xu2r_
not modelled 7.2 43
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:BAFF receptor-like
87d2oyza1
not modelled 7.2 33
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:VPA0057-like
88c3fbnC_
not modelled 7.2 0
PDB header:transcription
Chain: C: PDB Molecule:mediator of rna polymerase ii transcription subunit 7;
PDBTitle: structure of the mediator submodule med7n/31
89c4a17Q_
not modelled 7.2 12
PDB header:ribosome
Chain: Q: PDB Molecule:rpl17;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
90c2jxpA_
not modelled 7.1 16
PDB header:lipoprotein
Chain: A: PDB Molecule:putative lipoprotein b;
PDBTitle: solution nmr structure of uncharacterized lipoprotein b2 from nitrosomonas europaea. northeast structural genomics3 target ner45a
91c3f7xA_
not modelled 7.1 14
PDB header:unknown function
Chain: A: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (pp0894) from2 pseudomonas putida kt2440 at 1.24 a resolution
92c4lt5A_
not modelled 7.0 18
PDB header:oxidoreductase/dna
Chain: A: PDB Molecule:naegleria tet-like dioxygenase;
PDBTitle: structure of a naegleria tet-like dioxygenase in complex with 5-2 methylcytosine dna
93d1d8ia_
not modelled 7.0 31
Fold:CYTH-like phosphatases
Superfamily:CYTH-like phosphatases
Family:mRNA triphosphatase CET1
94c6bk4A_
not modelled 7.0 17
PDB header:rna binding protein
Chain: A: PDB Molecule:caprin homolog;
PDBTitle: crystal structure of the hr-1 domain of drosophila caprin in the2 p212121 space group
95c3krbB_
not modelled 6.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldose reductase;
PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution
96d1pcha_
not modelled 6.9 17
Fold:HPr-like
Superfamily:HPr-like
Family:HPr-like
97c6g2dB_
not modelled 6.8 12
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coa carboxylase 1;
PDBTitle: citrate-induced acetyl-coa carboxylase (acc-cit) filament at 5.4 a2 resolution
98c3pu2G_
not modelled 6.8 18
PDB header:structure genomics, unknown function
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q3j4m4_rhos4 protein from rhodobacter2 sphaeroides. northeast structural genomics consortium target rhr263.
99d1mtyg_
not modelled 6.8 45
Fold:Open three-helical up-and-down bundle
Superfamily:Methane monooxygenase hydrolase, gamma subunit
Family:Methane monooxygenase hydrolase, gamma subunit

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