Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2231Ac_(RVBD2231Ac)_2505744_2506163
DateMon Aug 5 13:25:36 BST 2019
Unique Job IDe6ded8fd4fda5249
SequenceMACTACPTIW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.934 Y:39.246 Z:34.955
Model (left) based on template c4xgrG_
Top template information
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence: 69.5% Coverage: 42%
58 residues ( 42% of your sequence) have been modelled with 69.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgrG_



69.5 19
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2d2h1ca1



43.6 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3d1r0ka3



32.0 38
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
4d1q0qa3



27.8 25
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
5d1y82a1



26.6 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c6a7vG_



22.5 19
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
7c3dboB_



22.2 10
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
8c5l6mC_



22.1 17
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
9c3a14B_



19.2 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
10c1r0lD_



17.5 38
PDB header:oxidoreductase
Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from zymomonas mobilis2 in complex with nadph
11c5kqoA_



14.8 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from vibrio vulnificus
12c1k5hB_



14.8 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase
13c4zn6B_



14.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray crystal structure of 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase (ispc) from acinetobacter baumannii
14c2eghA_



13.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin
15c3tndC_



13.0 18
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
16c2i5oA_



10.8 25
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta
17c5fmtB_



9.8 26
PDB header:protein transport
Chain: B: PDB Molecule:flagellar associated protein;
PDBTitle: crift54 ch-domain
18c3fiaA_



9.2 19
PDB header:protein binding
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: crystal structure of the eh 1 domain from human intersectin-1 protein.2 northeast structural genomics consortium target hr3646e.
19c4cu2A_



8.3 83
PDB header:hydrolase
Chain: A: PDB Molecule:endolysin;
PDBTitle: c-terminal domain of ctp1l endolysin mutant v195p that reduces2 autoproteolysis
20d2gycm1



8.1 25
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
21c4ce4h_



not modelled 7.9 18
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
22c3mtuE_



not modelled 7.7 24
PDB header:contractile protein
Chain: E: PDB Molecule:capsid assembly scaffolding protein,tropomyosin alpha-1
PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
23c6nmiB_



not modelled 7.2 23
PDB header:transcription
Chain: B: PDB Molecule:general transcription and dna repair factor iih helicase
PDBTitle: cryo-em structure of the human tfiih core complex
24c3zvkC_



not modelled 7.2 11
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
25c4bejB_



not modelled 6.8 13
PDB header:hydrolase
Chain: B: PDB Molecule:dynamin 1-like protein;
PDBTitle: nucleotide-free dynamin 1-like protein (dnm1l, drp1, dlp1)
26c4oogA_



not modelled 6.2 20
PDB header:hydrolase/rna
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
27c5husA_



not modelled 6.1 9
PDB header:transferase
Chain: A: PDB Molecule:trehalose synthase regulatory protein;
PDBTitle: structure of candida albicans trehalose synthase regulatory protein c-2 terminal domain
28c3ke3A_



not modelled 5.9 19
PDB header:transferase
Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase;
PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
29c3bboQ_



not modelled 5.6 17
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l18;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
30c2mx7A_



not modelled 5.3 21
PDB header:protein binding
Chain: A: PDB Molecule:synergin gamma;
PDBTitle: solution structure of the internal eh domain of gamma-synergin
31c4pwuC_



not modelled 5.2 17
PDB header:signaling protein
Chain: C: PDB Molecule:modulator protein mzra;
PDBTitle: crystal structure of a modulator protein mzra (kpn_03524) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 2.45 a3 resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite