Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2236c_(cobD)_2508442_2509383
DateMon Aug 5 13:25:37 BST 2019
Unique Job IDd9e8abcca759d4c7
SequenceVFASTWQTRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.137 Y:11.346 Z:13.088
Model (left) based on template c5h93C_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:geobacter metallireducens smug1;
PDBTitle: crystal structure of geobacter metallireducens smug1
Confidence and coverage
Confidence: 77.7% Coverage: 4%
14 residues ( 4% of your sequence) have been modelled with 77.7% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5h93C_



77.7 43
PDB header:hydrolase
Chain: C: PDB Molecule:geobacter metallireducens smug1;
PDBTitle: crystal structure of geobacter metallireducens smug1
2c6iiuA_



43.1 18
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
3c4l6rA_



32.2 13
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562 and glucagon receptor chimera;
PDBTitle: structure of the class b human glucagon g protein coupled receptor
4d256ba_



28.5 19
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome b562
5c4er9A_



28.1 19
PDB header:electron transport
Chain: A: PDB Molecule:soluble cytochrome b562;
PDBTitle: crystal structure of cytochrome b562 from salmonella enterica subsp.2 enterica serovar typhimurium str. 14028s
6c6g7oA_



23.9 19
PDB header:membrane protein
Chain: A: PDB Molecule:alkaline ceramidase 3,soluble cytochrome b562;
PDBTitle: crystal structure of human alkaline ceramidase 3 (acer3) at 2.72 angstrom resolution
7d1sxjc1



12.7 16
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
8d1sr2a_



12.6 12
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Sensor-like histidine kinase YojN, C-terminal domain
9c3nrtC_



12.2 22
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative ryanodine receptor;
PDBTitle: the crystal strucutre of putative ryanodine receptor from bacteroides2 thetaiotaomicron vpi-5482
10d1iqpa1



10.4 18
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
11c3u8pB_



8.6 19
PDB header:fluorescent protein, electron transport
Chain: B: PDB Molecule:cytochrome b562 integral fusion with enhanced green
PDBTitle: cytochrome b562 integral fusion with egfp
12c4etvA_



8.3 22
PDB header:metal transport
Chain: A: PDB Molecule:ryanodine receptor 2;
PDBTitle: crystal structure of mouse ryanodine receptor 2 (2699-2904)
13c1t6zB_



7.8 24
PDB header:transferase
Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase;
PDBTitle: crystal structure of riboflavin bound tm379
14c3j3vN_



7.4 12
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l17;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
15d1hw1a2



7.1 7
Fold:GntR ligand-binding domain-like
Superfamily:GntR ligand-binding domain-like
Family:GntR ligand-binding domain-like
16c4g78A_



7.1 18
PDB header:transferase
Chain: A: PDB Molecule:histidine phosphotransfer protein;
PDBTitle: subatomic resolution crystal structure of histidine-containing2 phosphotransfer protein mthpt2 from medicago truncatula
17d1khda2



7.0 19
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
18c3op1A_



6.7 24
PDB header:transferase
Chain: A: PDB Molecule:macrolide-efflux protein;
PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
19c3ixzB_



6.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
20d1wn0a1



6.5 15
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Phosphorelay protein-like
21c2mkbA_



not modelled 5.8 20
PDB header:viral protein
Chain: A: PDB Molecule:protease ns2-3;
PDBTitle: structure of ns2(113-137) gbvb protein
22c3frrA_



not modelled 5.8 14
PDB header:protein binding
Chain: A: PDB Molecule:uncharacterized protein kiaa0174;
PDBTitle: structure of human ist1(ntd) - (residues 1-189)(p21)
23c3rqrA_



not modelled 5.7 14
PDB header:metal transport
Chain: A: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal structure of the ryr domain of the rabbit ryanodine receptor
24c4or2A_



not modelled 5.4 19
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, metabotropic glutamate receptor 1;
PDBTitle: human class c g protein-coupled metabotropic glutamate receptor 1 in2 complex with a negative allosteric modulator
25d2peqa1



not modelled 5.3 17
Fold:RbcX-like
Superfamily:RbcX-like
Family:RbcX-like
26d2py8a1



not modelled 5.2 17
Fold:RbcX-like
Superfamily:RbcX-like
Family:RbcX-like

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below