Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2237A_(RVBD2237A)_2510359_2510595
DateMon Aug 5 13:25:37 BST 2019
Unique Job ID4cb2e3c88d77978a
SequenceVLRCRRGAGY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.183 Y:23.945 Z:15.090
Model (left) based on template c3absD_
Top template information
PDB header:lyase
Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine
Confidence and coverage
Confidence: 59.3% Coverage: 19%
15 residues ( 19% of your sequence) have been modelled with 59.3% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3absD_
59.3 53
PDB header:lyase
Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine
2c3anyB_
59.3 53
PDB header:lyase
Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol
3c5cofA_
36.3 33
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterised protein q1r1x2 from escherichia2 coli uti89
4c2oqqB_
33.5 32
PDB header:transcription
Chain: B: PDB Molecule:transcription factor hy5;
PDBTitle: crystal structure of hy5 leucine zipper homodimer from arabidopsis2 thaliana
5c2kitA_
25.3 55
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase tor1;
PDBTitle: the solution structure of the reduced yeast tor1 fatc domain bound to2 dpc micelles at 298k
6c1w1nA_
25.3 55
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase tor1;
PDBTitle: the solution structure of the fatc domain of the protein kinase tor12 from yeast
7c6anrA_
21.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:colibactin self-protection protein clbs;
PDBTitle: crystal structure of a self resistance protein clbs from colibactin2 biosynthetic gene cluster
8c4n6cB_
18.1 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the b1rzq2 protein from streptococcus pneumoniae.2 northeast structural genomics consortium (nesg) target spr36.
9c2kdpA_
17.2 60
PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase complex subunit sap30;
PDBTitle: solution structure of the sap30 zinc finger motif
10c3rl0Y_
16.4 30
PDB header:membrane protein/exocytosis
Chain: Y: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: truncated snare complex with complexin (p1)
11c3f1iH_
15.1 35
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
12c3varA_
15.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:aspartyl aminopeptidase;
PDBTitle: crystal structure of dnpep, znzn form
13c4btgB_
14.0 46
PDB header:virus
Chain: B: PDB Molecule:major inner protein p1;
PDBTitle: coordinates of the bacteriophage phi6 capsid subunits (p1a and p1b)2 fitted into the cryoem reconstruction of the procapsid at 4.4 a3 resolution
14c4emeB_
13.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:m18 aspartyl aminopeptidase;
PDBTitle: x-ray crystal structure and specificity of the plasmodium falciparum2 malaria aminopeptidase
15d1t3ta3
13.4 43
Fold:PurS-like
Superfamily:PurS-like
Family:FGAM synthase PurL, PurS-like domain
16c3c2qA_
13.2 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of conserved putative lor/sdh protein2 from methanococcus maripaludis s2
17c4i7aD_
11.7 42
PDB header:structural protein
Chain: D: PDB Molecule:ethanolamine utilization protein eutn/carboxysome
PDBTitle: grpn pentameric microcompartment shell protein from rhodospirillum2 rubrum
18c2d07A_
10.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase
19c5z08C_
10.8 40
PDB header:cell cycle
Chain: C: PDB Molecule:cenp-k;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
20d2o2aa1
10.7 38
Fold:SecB-like
Superfamily:SecB-like
Family:SP1558-like
21c5wsxA_
not modelled 9.8 56
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of sav606
22d2ywqa1
not modelled 9.8 30
Fold:Ribosome binding protein Y (YfiA homologue)
Superfamily:Ribosome binding protein Y (YfiA homologue)
Family:Ribosome binding protein Y (YfiA homologue)
23c2na4A_
not modelled 9.6 29
PDB header:chaperone, protein transport
Chain: A: PDB Molecule:curli production assembly/transport component csge;
PDBTitle: curli secretion specificity factor csge w48a/f79a mutant
24c3vviH_
not modelled 9.4 44
PDB header:transport protein
Chain: H: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
25c3vviD_
not modelled 9.4 44
PDB header:transport protein
Chain: D: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
26c3vviG_
not modelled 9.4 44
PDB header:transport protein
Chain: G: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
27c3vviC_
not modelled 9.4 44
PDB header:transport protein
Chain: C: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
28c3vviB_
not modelled 9.4 44
PDB header:transport protein
Chain: B: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
29c3vviE_
not modelled 9.4 44
PDB header:transport protein
Chain: E: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
30c3vviA_
not modelled 9.4 44
PDB header:transport protein
Chain: A: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
31c3vviF_
not modelled 9.4 44
PDB header:transport protein
Chain: F: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
32d1qmga2
not modelled 9.3 41
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
33c5msjD_
not modelled 9.1 11
PDB header:structural protein
Chain: D: PDB Molecule:proteasome activator complex subunit 1;
PDBTitle: mouse pa28alpha
34c1yveK_
not modelled 8.9 41
PDB header:oxidoreductase
Chain: K: PDB Molecule:acetohydroxy acid isomeroreductase;
PDBTitle: acetohydroxy acid isomeroreductase complexed with nadph,2 magnesium and inhibitor ipoha (n-hydroxy-n-3 isopropyloxamate)
35d1y7ea2
not modelled 8.7 37
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
36d2hnga1
not modelled 8.3 31
Fold:SecB-like
Superfamily:SecB-like
Family:SP1558-like
37c2f9uD_
not modelled 8.3 86
PDB header:viral protein
Chain: D: PDB Molecule:polyprotein;
PDBTitle: hcv ns3 protease domain with ns4a peptide and a ketoamide2 inhibitor with a p2 norborane
38d1ufza_
not modelled 8.2 40
Fold:RuvA C-terminal domain-like
Superfamily:HBS1-like domain
Family:HBS1-like domain
39d2imra1
not modelled 7.9 88
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:DR0824-like
40c4xlgB_
not modelled 7.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: c. glabrata slx1 in complex with slx4ccd.
41c2c2pA_
not modelled 7.4 36
PDB header:hydrolase
Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase;
PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans
42c2lseA_
not modelled 7.1 48
PDB header:de novo protein
Chain: A: PDB Molecule:four helix bundle protein;
PDBTitle: solution nmr structure of de novo designed four helix bundle protein,2 northeast structural genomics consortium (nesg) target or188
43c3di4A_
not modelled 6.6 38
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein duf1989;
PDBTitle: crystal structure of a duf1989 family protein (spo0365) from2 silicibacter pomeroyi dss-3 at 1.60 a resolution
44c1dipA_
not modelled 6.5 43
PDB header:acetylation
Chain: A: PDB Molecule:delta-sleep-inducing peptide immunoreactive
PDBTitle: the solution structure of porcine delta-sleep-inducing2 peptide immunoreactive peptide, nmr, 10 structures
45d1muga_
not modelled 6.4 35
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
46c6k1dB_
not modelled 6.1 50
PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
47c2yy0D_
not modelled 6.1 16
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
48c2my1A_
not modelled 6.1 13
PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor bud31;
PDBTitle: solution structure of bud31p
49c5yt6B_
not modelled 6.0 60
PDB header:protein binding
Chain: B: PDB Molecule:tax1-binding protein 1;
PDBTitle: crystal structure of tax1bp1 ubz2 in complex with mono-ubiquitin
50d2c52b1
not modelled 5.8 38
Fold:Nuclear receptor coactivator interlocking domain
Superfamily:Nuclear receptor coactivator interlocking domain
Family:Nuclear receptor coactivator interlocking domain
51c2nysA_
not modelled 5.5 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_3712p;
PDBTitle: x-ray crystal structure of protein agr_c_3712 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr88.
52d2nysa1
not modelled 5.5 31
Fold:SspB-like
Superfamily:SspB-like
Family:AGR C 3712p-like
53c5civA_
not modelled 5.4 21
PDB header:unknown function
Chain: A: PDB Molecule:sibling bacteriocin;
PDBTitle: sibling lethal factor precursor - dfsb
54c6qbzA_
not modelled 5.4 27
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome hibernation promoting factor;
PDBTitle: solution structure of the n-terminal domain of the staphylococcus2 aureus hibernation promoting factor
55c6b2zd_
not modelled 5.1 36
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
56c2jnsA_
not modelled 5.1 18
PDB header:unknown function
Chain: A: PDB Molecule:bromodomain-containing protein 4;
PDBTitle: solution structure of the bromodomain-containing protein 42 et domain

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