Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2239c_(-)_2511184_2511660
DateMon Aug 5 13:25:37 BST 2019
Unique Job ID58fa16f85e77ffc4
SequenceMPIATVCTWP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.124 Y:24.978 Z:23.074
Model (left) based on template d1rzsa_
Top template information
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
Confidence and coverage
Confidence: 67.1% Coverage: 25%
40 residues ( 25% of your sequence) have been modelled with 67.1% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1rzsa_



67.1 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
2d1wdia_



51.7 69
Fold:QueA-like
Superfamily:QueA-like
Family:QueA-like
3c2ktrA_



36.9 26
PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs
4c5loiA_



26.5 25
PDB header:signaling protein
Chain: A: PDB Molecule:rad26;
PDBTitle: crystal structure of myceliophthora thermophila rad26 (residues 373-2 841)
5c1yy3A_



24.0 80
PDB header:isomerase
Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase-
PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea)
6d1vkya_



22.8 50
Fold:QueA-like
Superfamily:QueA-like
Family:QueA-like
7d1ip9a_



20.3 32
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
8d2i4sa1



16.6 11
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:EpsC C-terminal domain-like
9d1qw2a_



15.3 32
Fold:Hypothetical protein Ta1206
Superfamily:Hypothetical protein Ta1206
Family:Hypothetical protein Ta1206
10d1lcya1



14.5 22
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:HtrA-like serine proteases
11d2nyga1



14.2 17
Fold:TTHA0583/YokD-like
Superfamily:TTHA0583/YokD-like
Family:Aminoglycoside 3-N-acetyltransferase-like
12c3smaD_



13.7 23
PDB header:transferase
Chain: D: PDB Molecule:frbf;
PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf
13d1v25a_



12.8 35
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
14c6bc3A_



12.6 26
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aac 3-vi protein;
PDBTitle: cryo x-ray structure of sisomicin bound aac-via
15c2zplA_



12.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of sigma e protease;
PDBTitle: crystal structure analysis of pdz domain a
16c6bwqB_



12.0 16
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
17c3bd1B_



11.3 15
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
18d1qlma_



11.1 27
Fold:Methenyltetrahydromethanopterin cyclohydrolase
Superfamily:Methenyltetrahydromethanopterin cyclohydrolase
Family:Methenyltetrahydromethanopterin cyclohydrolase
19d2i6va1



10.9 11
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:EpsC C-terminal domain-like
20c1q0vA_



10.5 44
PDB header:transport binding
Chain: A: PDB Molecule:hydrophilic protein; has cysteine rich putative
PDBTitle: solution structure of tandem uims of vps27
21c5hj1A_



not modelled 10.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase c protein;
PDBTitle: crystal structure of pdz domain of pullulanase c protein of type ii2 secretion system from klebsiella pneumoniae in complex with fatty3 acid
22c5ht0B_



not modelled 10.1 23
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside acetyltransferase hmb0005;
PDBTitle: crystal structure of an antibiotic_nat family aminoglycoside2 acetyltransferase hmb0038 from an uncultured soil metagenomic sample3 in complex with coenzyme a
23c6mb6A_



not modelled 10.0 29
PDB header:transferase
Chain: A: PDB Molecule:aac(3)-iiib protein;
PDBTitle: aac-iiib binary with coash
24d2ae0x1



not modelled 9.8 25
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
25c4fioA_



not modelled 9.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: crystal structure of methenyltetrahydromethanopterin cyclohydrolase2 from methanobrevibacter ruminantium
26c6g04B_



not modelled 9.2 30
PDB header:transport protein
Chain: B: PDB Molecule:40s ribosomal protein s26-a;
PDBTitle: nmr solution structure of yeast tsr2(1-152) in complex with s26a(100-2 119)
27c4qiwH_



not modelled 9.2 21
PDB header:transcription
Chain: H: PDB Molecule:dna-directed rna polymerase subunit h;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
28c4gvsA_



not modelled 9.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:methenyltetrahydromethanopterin cyclohydrolase;
PDBTitle: x-ray structure of the archaeoglobus fulgidus methenyl-2 tetrahydromethanopterin cyclohydrolase in complex with n5-formyl-3 tetrahydromethanopterin
29d1ky9b2



not modelled 9.0 17
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:HtrA-like serine proteases
30c2joaA_



not modelled 9.0 17
PDB header:protein binding
Chain: A: PDB Molecule:serine protease htra1;
PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances
31c4khbF_



not modelled 8.6 31
PDB header:transcription/replication
Chain: F: PDB Molecule:uncharacterized protein pob3n;
PDBTitle: structure of the spt16d pob3n heterodimer
32d1dzfa2



not modelled 8.5 29
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
33d1eika_



not modelled 8.3 21
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
34c6mn5A_



not modelled 8.2 20
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:aminoglycoside n(3)-acetyltransferase, aac(3)-iva;
PDBTitle: crystal structure of aminoglycoside acetyltransferase aac(3)-iva,2 h154a mutant, in complex with gentamicin c1a
35d1hmja_



not modelled 8.1 7
Fold:RPB5-like RNA polymerase subunit
Superfamily:RPB5-like RNA polymerase subunit
Family:RPB5
36c4m4xA_



not modelled 8.0 21
PDB header:transcription
Chain: A: PDB Molecule:aryl hydrocarbon receptor;
PDBTitle: structure and dimerization properties of the aryl hydrocarbon receptor2 (ahr) pas-a domain
37c6igxC_



not modelled 7.7 36
PDB header:cell cycle
Chain: C: PDB Molecule:condensin complex subunit 2;
PDBTitle: crystal structure of human cap-g in complex with cap-h
38c2pmzV_



not modelled 7.7 20
PDB header:translation, transferase
Chain: V: PDB Molecule:dna-directed rna polymerase subunit h;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
39c2n7pA_



not modelled 7.5 9
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of pdz domain
40d1ky9a1



not modelled 7.5 28
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:HtrA-like serine proteases
41c3e4fB_



not modelled 7.2 29
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase;
PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis
42c2p3wB_



not modelled 7.1 22
PDB header:protein binding
Chain: B: PDB Molecule:probable serine protease htra3;
PDBTitle: crystal structure of the htra3 pdz domain bound to a phage-derived2 ligand (fgrwv)
43d2g5da1



not modelled 6.5 24
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
44c1wypA_



not modelled 6.5 23
PDB header:structural protein
Chain: A: PDB Molecule:calponin 1;
PDBTitle: solution structure of the ch domain of human calponin 1
45c3n6xA_



not modelled 6.4 18
PDB header:ligase
Chain: A: PDB Molecule:putative glutathionylspermidine synthase;
PDBTitle: crystal structure of a putative glutathionylspermidine synthase2 (mfla_0391) from methylobacillus flagellatus kt at 2.35 a resolution
46c1lcyA_



not modelled 6.4 22
PDB header:hydrolase
Chain: A: PDB Molecule:htra2 serine protease;
PDBTitle: crystal structure of the mitochondrial serine protease htra2
47c2fvzB_



not modelled 6.1 27
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: human inositol monophosphosphatase 2
48c5t5iL_



not modelled 6.0 25
PDB header:oxidoreductase
Chain: L: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdd;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
49c2gefA_



not modelled 5.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:protease vp4;
PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism
50d1ogya1



not modelled 5.8 33
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
51d2jioa1



not modelled 5.6 25
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
52c3bn7A_



not modelled 5.5 24
PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (cc_2267) from2 caulobacter crescentus cb15 at 1.64 a resolution
53c1wa9A_



not modelled 5.5 24
PDB header:circadian rhythm
Chain: A: PDB Molecule:period circadian protein;
PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period
54c2r3yC_



not modelled 5.5 33
PDB header:hydrolase/hydrolase activator
Chain: C: PDB Molecule:protease degs;
PDBTitle: crystal structure of the degs protease in complex with the2 ywf activating peptide
55c4n81A_



not modelled 5.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:inositol monophosphatase;
PDBTitle: another flexible region at the active site of an inositol2 monophosphatase from zymomonas mobilis
56d3c8da1



not modelled 5.3 28
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Enterochelin esterase N-terminal domain-like
57c2egeA_



not modelled 5.2 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein kiaa1666;
PDBTitle: solution structure of the third sh3 domain from human2 kiaa1666 protein
58d1kqfa1



not modelled 5.1 25
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
59c4jj0B_



not modelled 5.0 13
PDB header:electron transport
Chain: B: PDB Molecule:mamp;
PDBTitle: crystal structure of mamp

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