Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2240c_(-)_2511698_2512288
DateMon Aug 5 13:25:37 BST 2019
Unique Job ID23d88115694f9935
SequenceVLIGWRAVPR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.110 Y:20.507 Z:31.268
Model (left) based on template c2ke3A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:neuroendocrine convertase 1;
PDBTitle: pc1/3 dcsg sorting domain in chaps
Confidence and coverage
Confidence: 44.3% Coverage: 14%
27 residues ( 14% of your sequence) have been modelled with 44.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ke3A_



44.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:neuroendocrine convertase 1;
PDBTitle: pc1/3 dcsg sorting domain in chaps
2c2kdtA_



41.4 19
PDB header:protein transport
Chain: A: PDB Molecule:neuroendocrine convertase 1;
PDBTitle: pc1/3 dcsg sorting domain structure in dpc
3c3k3wA_



25.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:penicillin g acylase;
PDBTitle: thermostable penicillin g acylase from alcaligenes faecalis in2 orthorhombic form
4c5h5mA_



25.0 10
PDB header:cell adhesion
Chain: A: PDB Molecule:alpha-catenin-like protein hmp-1;
PDBTitle: crystal structure of hmp-1 m domain
5d1wiia_



21.1 19
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Putative zinc binding domain
6c5fhyA_



19.4 10
PDB header:structural protein
Chain: A: PDB Molecule:b-type flagellar hook-associated protein 2;
PDBTitle: crystal structure of flid (hap2) from pseudomonas aeruginosa pao1
7c4c9yB_



17.7 10
PDB header:cell cycle
Chain: B: PDB Molecule:spindle and kinetochore-associated protein 1;
PDBTitle: structural basis for the microtubule binding of the human2 kinetochore ska complex
8c2lycA_



17.6 15
PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
9c2lfcA_



16.4 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit;
PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j
10c2zxeG_



15.5 14
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
11c5xogM_



15.4 25
PDB header:transcription
Chain: M: PDB Molecule:transcription elongation factor 1 homolog;
PDBTitle: rna polymerase ii elongation complex bound with spt5 kow5 and elf1
12c6d6rL_



14.6 29
PDB header:hydrolase
Chain: L: PDB Molecule:m-phase phosphoprotein 6;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
13c6d6qL_



14.6 29
PDB header:hydrolase
Chain: L: PDB Molecule:m-phase phosphoprotein 6;
PDBTitle: human nuclear exosome-mtr4 rna complex - overall reconstruction
14c2mmpA_



13.3 19
PDB header:ribosomal protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a ribosomal protein
15d1st6a5



13.0 26
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
16c2kt5B_



12.9 55
PDB header:rna binding protein / viral protein
Chain: B: PDB Molecule:icp27;
PDBTitle: rrm domain of mrna export adaptor ref2-i bound to hsv-1 icp27 peptide
17d2asxa1



10.4 9
Fold:HAMP domain-like
Superfamily:HAMP domain-like
Family:HAMP domain
18d1d4ca3



9.1 16
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
19c5fimA_



8.2 8
PDB header:unknown function
Chain: A: PDB Molecule:ygau;
PDBTitle: the structure of kbp.k from e. coli
20d2ihoa2



7.9 41
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:MOA C-terminal domain-like
21c2jp3A_



not modelled 7.8 17
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
22c2k9yA_



not modelled 7.4 35
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
23c2k9yB_



not modelled 7.4 35
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
24c4odaC_



not modelled 7.4 36
PDB header:hydrolase/replication
Chain: C: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
25c4odaD_



not modelled 7.4 36
PDB header:hydrolase/replication
Chain: D: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
26c2ihoA_



not modelled 7.2 41
PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: crystal structure of moa, a lectin from the mushroom marasmius oreades2 in complex with the trisaccharide gal(1,3)gal(1,4)glcnac
27c2m7xA_



not modelled 6.8 50
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: structural and functional analysis of transmembrane segment iv of the2 salt tolerance protein sod2
28c5h5vC_



not modelled 6.7 10
PDB header:structural protein
Chain: C: PDB Molecule:flagellar hook-associated protein 2;
PDBTitle: crystal structure of the flagellar cap protein flid d1-d2-d3 domains2 from escherichia coli
29d1b3ta_



not modelled 6.6 41
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
30c5o1mA_



not modelled 6.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
31c3phzA_



not modelled 6.0 35
PDB header:sugar binding protein
Chain: A: PDB Molecule:ricin b-related lectin;
PDBTitle: crystal structure analysis of polyporus squamosus lectin bound to2 human-type influenza-binding epitope neu5aca2-6galb1-4glcnac
32d1sj7a1



not modelled 5.9 14
Fold:A middle domain of Talin 1
Superfamily:A middle domain of Talin 1
Family:A middle domain of Talin 1
33d1y0pa3



not modelled 5.8 6
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
34c5tw9D_



not modelled 5.4 13
PDB header:lipid-binding protein
Chain: D: PDB Molecule:iron uptake system component efeo;
PDBTitle: 1.50 angstrom crystal structure of c-terminal fragment (residues 322-2 384) of iron uptake system component efeo from yersinia pestis.
35d1zeea1



not modelled 5.4 29
Fold:Indolic compounds 2,3-dioxygenase-like
Superfamily:Indolic compounds 2,3-dioxygenase-like
Family:Indoleamine 2,3-dioxygenase-like
36c2xrhA_



not modelled 5.3 6
PDB header:unknown function
Chain: A: PDB Molecule:protein hp0721;
PDBTitle: crystal structure of the truncated form of hp0721
37c2zqpE_



not modelled 5.2 50
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus2 thermophilus
38c2zjsE_



not modelled 5.2 50
PDB header:protein transport/immune system
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus thermophilus with a2 fab fragment
39c2yskA_



not modelled 5.1 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1432;
PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus

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Transmembrane helix prediction 

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