Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2253_(-)_2527994_2528497
DateMon Aug 5 13:25:39 BST 2019
Unique Job IDb450af5aeeb751c0
SequenceMSGHRKKAML ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.607 Y:41.343 Z:49.100
Model (left) based on template c5xlmB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkni;
PDBTitle: monomer form of m.tuberculosis pkni sensor domain
Confidence and coverage
Confidence: 97.3% Coverage: 66%
110 residues ( 66% of your sequence) have been modelled with 97.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xlmB_



97.3 23
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkni;
PDBTitle: monomer form of m.tuberculosis pkni sensor domain
2c6hdvB_



38.9 23
PDB header:biotin binding protein
Chain: B: PDB Molecule:afifavidin;
PDBTitle: the crystal structure of intact afifavidin apo form
3c2lboA_



37.8 11
PDB header:cell adhesion
Chain: A: PDB Molecule:microneme protein 3;
PDBTitle: eimeria tenella microneme protein 3 mar_b domain
4d2p3pa1



37.3 33
Fold:PG1388-like
Superfamily:PG1388-like
Family:PG1388-like
5c4ggzC_



30.4 23
PDB header:biotin binding protein
Chain: C: PDB Molecule:bradavidin 2;
PDBTitle: the structure of bradavidin2-biotin complex
6c5oxwD_



24.5 38
PDB header:splicing
Chain: D: PDB Molecule:neq068;
PDBTitle: structure of neqn from nanoarchaeum equitans
7c6ff43_



23.9 47
PDB header:splicing
Chain: 3: PDB Molecule:bud13 homolog;
PDBTitle: human bact spliceosome core structure
8c2mkcC_



19.1 42
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor cwc26;
PDBTitle: cooperative structure of the heterotrimeric pre-mrna retention and2 splicing complex
9c5zwoY_



18.4 42
PDB header:splicing
Chain: Y: PDB Molecule:pre-mrna-splicing factor cwc26;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
10c6m9yD_



17.8 19
PDB header:fluorescent protein
Chain: D: PDB Molecule:fluorescent protein lanfp6a;
PDBTitle: x-ray structure of branchiostoma floridae fluorescent protein lanfp6a
11d2o14a1



16.2 24
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:YxiM N-terminal domain-like
12c4jnjA_



15.4 29
PDB header:protein binding
Chain: A: PDB Molecule:streptavidin/rhizavidin hybrid;
PDBTitle: structure based engineering of streptavidin monomer with a reduced2 biotin dissociation rate
13c5xh9A_



13.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular invertase;
PDBTitle: aspergillus kawachii beta-fructofuranosidase
14c1qg9A_



13.6 50
PDB header:transmembrane channel
Chain: A: PDB Molecule:protein (sodium channel protein, brain ii alpha
PDBTitle: second repeat (is2mic) from voltage-gated sodium channel
15d1kfwa2



13.0 44
Fold:FKBP-like
Superfamily:Chitinase insertion domain
Family:Chitinase insertion domain
16c5mmjw_



12.1 17
PDB header:ribosome
Chain: W: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
17c5gjyB_



11.8 28
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of duck mhc class i for 1.71 angstrom
18c3rd5A_



11.7 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:mypaa.01249.c;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium paratuberculosis
19d1fgpa_



11.5 22
Fold:N-terminal domains of the minor coat protein g3p
Superfamily:N-terminal domains of the minor coat protein g3p
Family:N-terminal domains of the minor coat protein g3p
20c2j42A_



11.2 22
PDB header:toxin
Chain: A: PDB Molecule:c2 toxin component-ii;
PDBTitle: low quality crystal structure of the transport component c2-2 ii of the c2-toxin from clostridium botulinum
21c5jk2I_



not modelled 11.1 57
PDB header:cell adhesion
Chain: I: PDB Molecule:tp0751;
PDBTitle: crystal structure of treponema pallidum tp0751 (pallilysin)
22d1wioa4



not modelled 10.9 63
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
23d1vjha_



not modelled 10.6 11
Fold:TBP-like
Superfamily:Bet v1-like
Family:Pathogenesis-related protein 10 (PR10)-like
24d1swga_



not modelled 10.3 35
Fold:Streptavidin-like
Superfamily:Avidin/streptavidin
Family:Avidin/streptavidin
25d1muja1



not modelled 10.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
26d1cida2



not modelled 9.8 63
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
27c1wcuA_



not modelled 9.5 38
PDB header:carbohydrate binding
Chain: A: PDB Molecule:non-catalytic protein 1;
PDBTitle: cbm29_1, a family 29 carbohydrate binding module from2 piromyces equi
28d1gwma_



not modelled 9.1 50
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 29 carbohydrate binding module, CBM29
29d1oxda_



not modelled 8.8 24
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
30c3rduA_



not modelled 8.7 23
PDB header:biotin binding protein
Chain: A: PDB Molecule:streptavidin;
PDBTitle: crystal structure of r7-2 streptavidin complexed with peg
31c2xjqA_



not modelled 8.5 37
PDB header:cell adhesion
Chain: A: PDB Molecule:flocculation protein flo5;
PDBTitle: x-ray structure of the n-terminal domain of the flocculin2 flo5 from saccharomyces cerevisiae
32c3ks7D_



not modelled 7.9 19
PDB header:hydrolase
Chain: D: PDB Molecule:putative putative pngase f;
PDBTitle: crystal structure of putative peptide:n-glycosidase f (pngase f)2 (yp_210507.1) from bacteroides fragilis nctc 9343 at 2.30 a3 resolution
33c5uasA_



not modelled 7.9 50
PDB header:lyase
Chain: A: PDB Molecule:ulvanlyase-pl25;
PDBTitle: structure of a new family of polysaccharide lyase pl25-ulvanlyase2 bound to -[glca(1-4)rha3s]-
34c6rrkC_



not modelled 7.8 44
PDB header:gene regulation
Chain: C: PDB Molecule:double-strand-break repair protein rad21 homolog;
PDBTitle: crystal structure of the central region of human cohesin subunit stag12 in complex with rad21 peptide
35c3ew2A_



not modelled 7.8 14
PDB header:unknown function
Chain: A: PDB Molecule:rhizavidin;
PDBTitle: crystal structure of rhizavidin-biotin complex
36c4he4A_



not modelled 7.6 14
PDB header:fluorescent protein
Chain: A: PDB Molecule:yellow fluorescent protein;
PDBTitle: crystal structure of the yellow fluorescent protein phiyfp (phialidium2 sp.)
37c6f37B_



not modelled 7.5 36
PDB header:sugar binding protein
Chain: B: PDB Molecule:nano3,fucose-binding lectin protein;
PDBTitle: fusion protein of rsl and trimeric coiled coil
38c5fk8B_



not modelled 7.4 28
PDB header:hydrolase
Chain: B: PDB Molecule:beta-fructofuranosidase;
PDBTitle: structure of d80a-fructofuranosidase from xanthophyllomyces2 dendrorhous complexed with neo-erlose
39c4hzvA_



not modelled 7.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:neuraminidase;
PDBTitle: the crystal structure of influenza a neuraminidase n3
40d1uzma1



not modelled 7.3 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
41d1riea_



not modelled 7.3 18
Fold:ISP domain
Superfamily:ISP domain
Family:Rieske iron-sulfur protein (ISP)
42c5kgzA_



not modelled 7.1 57
PDB header:virulence factor
Chain: A: PDB Molecule:modulin beta2;
PDBTitle: phenol-soluble modulin beta2
43c4dxsB_



not modelled 6.9 50
PDB header:structural protein
Chain: B: PDB Molecule:nesprin-2;
PDBTitle: human sun2-kash2 complex
44c3kvoB_



not modelled 6.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:hydroxysteroid dehydrogenase-like protein 2;
PDBTitle: crystal structure of the catalytic domain of human hydroxysteroid2 dehydrogenase like 2 (hsdl2)
45c2rt4A_



not modelled 6.9 45
PDB header:de novo protein
Chain: A: PDB Molecule:af.2a1;
PDBTitle: nmr structure of designed protein, af.2a1, (ensembles)
46c5y9hA_



not modelled 6.9 26
PDB header:cell adhesion
Chain: A: PDB Molecule:safd,putative outer membrane protein,putative outer
PDBTitle: crystal structure of safdaa-dsc complex
47d1wwwv_



not modelled 6.7 27
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Neurotrophin
48c2rpsA_



not modelled 6.6 57
PDB header:immune system
Chain: A: PDB Molecule:chemokine;
PDBTitle: solution structure of a novel insect chemokine isolated from2 integument
49c1vw4b_



not modelled 6.5 33
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
50c4h8pA_



not modelled 6.4 24
PDB header:heme-binding protein
Chain: A: PDB Molecule:iron transport-associated domain protein;
PDBTitle: neat5 domain of isdx2, a b. anthracis hemophore in complex with heme
51c2n73B_



not modelled 6.2 29
PDB header:transferase/transferase regulator
Chain: B: PDB Molecule:phosphatidylinositol 4-kinase beta;
PDBTitle: solution structure of the acbd3:pi4kb complex
52c1w0pA_



not modelled 6.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:sialidase;
PDBTitle: vibrio cholerae sialidase with alpha-2,6-sialyllactose
53c3qfhE_



not modelled 6.1 50
PDB header:hydrolase
Chain: E: PDB Molecule:epidermin leader peptide processing serine protease epip;
PDBTitle: 2.05 angstrom resolution crystal structure of epidermin leader peptide2 processing serine protease (epip) from staphylococcus aureus.
54c4zelA_



not modelled 6.1 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:dopamine beta-hydroxylase;
PDBTitle: human dopamine beta-hydroxylase
55c2hpwA_



not modelled 6.0 13
PDB header:luminescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: green fluorescent protein from clytia gregaria
56c5tpjA_



not modelled 6.0 38
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
57c3c12A_



not modelled 6.0 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
58c2naeA_



not modelled 6.0 40
PDB header:signaling protein
Chain: A: PDB Molecule:t-cell-specific surface glycoprotein cd28;
PDBTitle: membrane-bound mouse cd28 cytoplasmic tail
59d3bkjh1



not modelled 5.9 36
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
60d1kp5a_



not modelled 5.8 24
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
61c2z6zA_



not modelled 5.8 22
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent protein dronpa;
PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state
62c3imoC_



not modelled 5.7 18
PDB header:unknown function
Chain: C: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of vibrio cholerae. integron2 cassette protein vch_cass14
63c4k90B_



not modelled 5.7 14
PDB header:hydrolase
Chain: B: PDB Molecule:extracellular metalloproteinase mep;
PDBTitle: extracellular metalloproteinase from aspergillus
64c3szhB_



not modelled 5.6 25
PDB header:biotin-binding protein
Chain: B: PDB Molecule:avidin/streptavidin;
PDBTitle: crystal structure of apo shwanavidin (p1 form)
65d2dk3a1



not modelled 5.6 31
Fold:SH3-like barrel
Superfamily:Mib/herc2 domain-like
Family:Mib/herc2 domain
66c4gqzB_



not modelled 5.6 32
PDB header:metal binding protein
Chain: B: PDB Molecule:putative periplasmic or exported protein;
PDBTitle: crystal structure of s.cuep
67c4aivA_



not modelled 5.5 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable nitrite reductase [nad(p)h] small subunit nird;
PDBTitle: crystal structure of putative nadh-dependent nitrite reductase small2 subunit from mycobacterium tuberculosis
68c4dxrB_



not modelled 5.5 50
PDB header:structural protein
Chain: B: PDB Molecule:nesprin-1;
PDBTitle: human sun2-kash1 complex
69d1c16a1



not modelled 5.5 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
70c3h6zA_



not modelled 5.5 50
PDB header:transcription
Chain: A: PDB Molecule:polycomb protein sfmbt;
PDBTitle: crystal structure of the four mbt repeats of drosophila melanogaster2 sfmbt in complex with peptide rhr (me)k vlr
71c3dkmA_



not modelled 5.4 31
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hectd1;
PDBTitle: crystal structure of the hectd1 cph domain
72d2qamc2



not modelled 5.4 50
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
73c2e6pA_



not modelled 5.3 16
PDB header:structural protein
Chain: A: PDB Molecule:obscurin-like protein 1;
PDBTitle: solution structure of the ig-like domain (714-804) from2 human obscurin-like protein 1
74c2x9aA_



not modelled 5.2 29
PDB header:viral protein
Chain: A: PDB Molecule:attachment protein g3p;
PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola
75d2cjta1



not modelled 5.2 13
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
76c3ij2B_



not modelled 5.2 25
PDB header:hormone/protein binding
Chain: B: PDB Molecule:beta-nerve growth factor;
PDBTitle: ligand-receptor structure
77d2f01a1



not modelled 5.1 37
Fold:Streptavidin-like
Superfamily:Avidin/streptavidin
Family:Avidin/streptavidin
78d1c99a_



not modelled 5.1 50
Fold:Transmembrane helix hairpin
Superfamily:F1F0 ATP synthase subunit C
Family:F1F0 ATP synthase subunit C
79d1cmca_



not modelled 5.1 50
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Met repressor, MetJ (MetR)
80c4uqtB_



not modelled 5.1 25
PDB header:translation
Chain: B: PDB Molecule:pre-mrna-splicing factor cwc26;
PDBTitle: rrm-peptide structure in res complex
81d1b8mb_



not modelled 5.1 19
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Neurotrophin
82c4b7qD_



not modelled 5.0 27
PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: h1n1 2009 pandemic influenza virus: resistance of the i223r2 neuraminidase mutant explained by kinetic and structural analysis
83c4bjjB_



not modelled 5.0 33
PDB header:transcription
Chain: B: PDB Molecule:transcription factor tau subunit sfc7;
PDBTitle: sfc1-sfc7 dimerization module

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