Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2256c_(-)_2529351_2529884
DateMon Aug 5 13:25:39 BST 2019
Unique Job IDdaf675633bb9b93c
SequenceVEPKEQQMRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.608 Y:31.540 Z:31.339
Model (left) based on template c4el8A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module
Confidence and coverage
Confidence: 67.2% Coverage: 27%
47 residues ( 27% of your sequence) have been modelled with 67.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4el8A_
67.2 36
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module
2d1l1ya_
62.8 29
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
3c1l2aD_
62.8 29
PDB header:hydrolase
Chain: D: PDB Molecule:cellobiohydrolase;
PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome
4d1g9ga_
59.2 24
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
5c4kkkA_
49.4 33
PDB header:hydrolase
Chain: A: PDB Molecule:exoglucanase s;
PDBTitle: complex structure of catalytic domain of clostridium cellulovorans2 exgs and cellotetraose
6c4fusA_
45.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:rtx toxins and related ca2+-binding protein;
PDBTitle: the x-ray structure of hahella chejuensis family 48 glycosyl hydrolase
7c5bv9A_
45.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: the structure of bacillus pumilus gh48 in complex with cellobiose
8c4jjjA_
44.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: the structure of t. fusca gh48 d224n mutant
9d1wgla_
22.9 15
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
10d1isia_
21.6 44
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:ADP ribosyl cyclase-like
11c5vztB_
21.2 23
PDB header:cell cycle
Chain: B: PDB Molecule:f-box only protein 31;
PDBTitle: crystal structure of the skp1-fbxo31 complex
12c2wjyA_
20.2 46
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
13c2eg9B_
19.8 38
PDB header:hydrolase
Chain: B: PDB Molecule:adp-ribosyl cyclase 1;
PDBTitle: crystal structure of the truncated extracellular domain of2 mouse cd38
14d1r12a_
18.2 31
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:ADP ribosyl cyclase-like
15c3ideD_
17.5 17
PDB header:virus like particle
Chain: D: PDB Molecule:capsid protein vp2;
PDBTitle: structure of ipnv subviral particle
16c2df7H_
16.6 21
PDB header:virus like particle
Chain: H: PDB Molecule:structural polyprotein vp2;
PDBTitle: crystal structure of infectious bursal disease virus vp2 subviral2 particle
17d2df7a1
16.0 21
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Birnaviridae-like VP
18c2i5gB_
15.2 36
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase;
PDBTitle: crystal strcuture of amidohydrolase from pseudomonas aeruginosa
19c2xzlA_
14.8 50
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
20c5jjpB_
14.7 26
PDB header:ligase
Chain: B: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
21c3b40A_
not modelled 14.7 29
PDB header:hydrolase
Chain: A: PDB Molecule:probable dipeptidase;
PDBTitle: crystal structure of the probable dipeptidase pvdm from pseudomonas2 aeruginosa
22d1yl7a2
not modelled 14.2 19
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
23d2ef1a1
not modelled 14.2 31
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:ADP ribosyl cyclase-like
24c2jy5A_
not modelled 14.2 11
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
25c5bniA_
not modelled 14.1 31
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: porcine cd38 complexed with complexed with a covalent intermediate,2 ribo-f-ribose-5'-phosphate
26c1rqrA_
not modelled 13.3 31
PDB header:transferase
Chain: A: PDB Molecule:5'-fluoro-5'-deoxyadenosine synthase;
PDBTitle: crystal structure and mechanism of a bacterial fluorinating enzyme,2 product complex
27d1veja1
not modelled 13.3 12
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
28d1mw7a_
not modelled 13.2 16
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
29c3rbyB_
not modelled 13.1 18
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein ylr301w;
PDBTitle: crystal structure of uncharacterized protein ylr301w from2 saccharomycces cerevisiae
30c6a7vU_
not modelled 13.0 20
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
31c3ghhA_
not modelled 12.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:ecto-nad+ glycohydrolase (cd38 molecule);
PDBTitle: structural insights into the catalytic mechanism of cd38: evidence for2 a conformationally flexible covalent enzyme-substrate complex.
32c5mrvB_
not modelled 12.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:carboxypeptidase o;
PDBTitle: crystal structure of human carboxypeptidase o in complex with nvci
33d1lfpa_
not modelled 12.2 18
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
34c1s21A_
not modelled 11.5 29
PDB header:chaperone
Chain: A: PDB Molecule:orf2;
PDBTitle: crystal structure of avrpphf orf2, a type iii effector from p.2 syringae
35d1s21a_
not modelled 11.5 29
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:AvrPphF ORF2, a type III effector
36c5fu4B_
not modelled 11.5 38
PDB header:sugar binding protein
Chain: B: PDB Molecule:cbm74-rfgh5;
PDBTitle: the complexity of the ruminococcus flavefaciens cellulosome reflects2 an expansion in glycan recognition
37c4gr5B_
not modelled 11.3 30
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
38c3lu2B_
not modelled 11.3 27
PDB header:hydrolase
Chain: B: PDB Molecule:lmo2462 protein;
PDBTitle: structure of lmo2462, a listeria monocytogenes amidohydrolase family2 putative dipeptidase
39d1j5pa3
not modelled 11.2 7
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
40d2imha1
not modelled 10.8 23
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:SPO2555-like
41d1zvpa2
not modelled 10.7 11
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:VC0802-like
42d1gff2_
not modelled 10.4 24
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
43d2axpa1
not modelled 10.1 35
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
44c5z2fA_
not modelled 10.0 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: nadph/pda bound dihydrodipicolinate reductase from paenisporosarcina2 sp. tg-14
45d1vmaa1
not modelled 9.9 17
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
46d1zhva2
not modelled 9.7 11
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
47d1nera_
not modelled 9.7 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
48c2ragB_
not modelled 9.4 36
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidase;
PDBTitle: crystal structure of aminohydrolase from caulobacter crescentus
49c3fdgA_
not modelled 9.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19;
PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19
50c5jjpC_
not modelled 8.8 26
PDB header:ligase
Chain: C: PDB Molecule:nonribosomal peptide synthase;
PDBTitle: crystal structure of cmis6
51d1m06g_
not modelled 8.7 27
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
52c2dhyA_
not modelled 8.5 12
PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
53c3n70F_
not modelled 8.4 37
PDB header:transport protein
Chain: F: PDB Molecule:transport activator;
PDBTitle: the crystal structure of the p-loop ntpase domain of the sigma-542 transport activator from e. coli to 2.8a
54c3esmA_
not modelled 8.1 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from nocardia2 farcinica reveals an immunoglobulin-like fold
55d1j8fa_
not modelled 7.6 35
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
56d1h41a2
not modelled 7.6 17
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:alpha-D-glucuronidase, N-terminal domain
57c5ns5A_
not modelled 7.5 36
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase glij;
PDBTitle: cys-gly dipeptidase glij in complex with cu2+ and zn2+
58c2cwbA_
not modelled 7.1 8
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
59d1rqpa2
not modelled 7.1 26
Fold:Bacterial fluorinating enzyme, N-terminal domain
Superfamily:Bacterial fluorinating enzyme, N-terminal domain
Family:Bacterial fluorinating enzyme, N-terminal domain
60d1t1ja_
not modelled 6.9 20
Fold:Flavodoxin-like
Superfamily:N-(deoxy)ribosyltransferase-like
Family:Hypothetical protein PA1492
61c4yxpA_
not modelled 6.9 13
PDB header:viral protein
Chain: A: PDB Molecule:mrna export factor;
PDBTitle: the structure of the folded domain of the signature multifunctional2 protein icp27 from herpes simplex virus-1 reveals an intertwined3 dimer.
62d2piaa2
not modelled 6.4 21
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
63c5i2cA_
not modelled 6.2 14
PDB header:signaling protein
Chain: A: PDB Molecule:gats-like protein 3;
PDBTitle: arginine-bound castor1 from homo sapiens
64c5ohgJ_
not modelled 6.2 40
PDB header:lyase
Chain: J: PDB Molecule:ribonuclease e;
PDBTitle: enolase in complex with rnase e
65d2bwba1
not modelled 6.1 23
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
66c6ozvA_
not modelled 6.1 33
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
67c3itcA_
not modelled 5.9 50
PDB header:hydrolase
Chain: A: PDB Molecule:renal dipeptidase;
PDBTitle: crystal structure of sco3058 with bound citrate and glycerol
68d1wiva_
not modelled 5.8 15
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
69d1twda_
not modelled 5.6 22
Fold:TIM beta/alpha-barrel
Superfamily:CutC-like
Family:CutC-like
70c2vsaA_
not modelled 5.5 24
PDB header:toxin
Chain: A: PDB Molecule:mosquitocidal toxin;
PDBTitle: structure and mode of action of a mosquitocidal holotoxin
71d2ns0a1
not modelled 5.4 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
72d1itua_
not modelled 5.3 36
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Renal dipeptidase
73c1zhvA_
not modelled 5.3 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0741;
PDBTitle: x-ray crystal structure protein atu0741 from agobacterium tumefaciens.2 northeast structural genomics consortium target atr8.
74d1b7go1
not modelled 5.2 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
75c2b44A_
not modelled 5.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:glycyl-glycine endopeptidase lytm;
PDBTitle: truncated s. aureus lytm, p 32 2 1 crystal form
76c5y7dA_
not modelled 5.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:protein cxorf40a;
PDBTitle: crystal structure of human endothelial-overexpressed lps associated2 factor 1

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