Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2271_(-)_2545342_2545641
DateMon Aug 5 13:25:41 BST 2019
Unique Job IDaa7ff64f8835e6d1
SequenceMTTPPDKARR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.444 Y:26.002 Z:44.368
Model (left) based on template c5u9oD_
Top template information
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
Confidence and coverage
Confidence: 55.8% Coverage: 55%
54 residues ( 55% of your sequence) have been modelled with 55.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5u9oD_



55.8 17
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
2d1lvaa4



50.9 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
3c4jrbA_



34.2 17
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
4c3uxuA_



33.4 2
PDB header:recombination
Chain: A: PDB Molecule:probable integrase;
PDBTitle: the structure of the catalytic domain of the sulfolobus spindle-shaped2 viral integrase reveals an evolutionarily conserved catalytic core3 and supports a mechanism of dna cleavage in trans
5c3lacA_



31.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of bacillus anthracis pyrrolidone-carboxylate2 peptidase, pcp
6c1wsuA_



27.5 22
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
7c2xvcA_



26.6 29
PDB header:cell cycle
Chain: A: PDB Molecule:escrt-iii;
PDBTitle: molecular and structural basis of escrt-iii recruitment to membranes2 during archaeal cell division
8c2pjpA_



26.2 22
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
9c1z1bA_



26.1 12
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
10c1lvaA_



25.7 22
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
11c4j5mA_



24.8 12
PDB header:protein transport
Chain: A: PDB Molecule:unconventional myosin-vb;
PDBTitle: structure of the cargo binding domain from human myosin vb
12c3nijA_



22.3 67
PDB header:metal binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase ubr1;
PDBTitle: the structure of ubr box (hiaa)
13c3hy4A_



22.3 15
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase;
PDBTitle: structure of human mthfs with n5-iminium phosphate
14c5d9rA_



21.7 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
15c5oatF_



21.0 7
PDB header:kinase
Chain: F: PDB Molecule:serine/threonine-protein kinase pink1, mitochondrial-like
PDBTitle: pink1 structure
16c2plyB_



21.0 22
PDB header:translation/rna
Chain: B: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
17c5dcfA_



20.5 14
PDB header:recombination
Chain: A: PDB Molecule:tyrosine recombinase xerd,dna translocase ftsk;
PDBTitle: c-terminal domain of xerd recombinase in complex with gamma domain of2 ftsk
18c3bhpA_



20.2 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384
19c2kfvA_



19.7 22
PDB header:isomerase
Chain: A: PDB Molecule:fk506-binding protein 3;
PDBTitle: structure of the amino-terminal domain of human fk506-2 binding protein 3 / northeast structural genomics3 consortium target ht99a
20c2f6hX_



19.5 16
PDB header:structural protein
Chain: X: PDB Molecule:myosin-2;
PDBTitle: myosin v cargo binding domain
21c2csdB_



not modelled 19.1 33
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
22c5aonB_



not modelled 18.3 18
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
23c5zrzB_



not modelled 17.7 20
PDB header:protein binding
Chain: B: PDB Molecule:sterile alpha motif domain-containing protein 5;
PDBTitle: crystal structure of epha5/samd5 complex
24c3wb8H_



not modelled 17.2 12
PDB header:motor protein
Chain: H: PDB Molecule:unconventional myosin-va;
PDBTitle: crystal structure of myova-gtd
25c3hilB_



not modelled 16.8 27
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)
26c2w85A_



not modelled 16.3 15
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
27c4l8tA_



not modelled 16.2 13
PDB header:protein transport
Chain: A: PDB Molecule:unconventional myosin-vc;
PDBTitle: structure of the cargo binding domain from human myosin vc
28c4b2vA_



not modelled 16.2 67
PDB header:toxin
Chain: A: PDB Molecule:s64;
PDBTitle: s64, a spider venom toxin peptide from sicarius dolichocephalus
29d1p7da_



not modelled 15.3 16
Fold:DNA breaking-rejoining enzymes
Superfamily:DNA breaking-rejoining enzymes
Family:Lambda integrase-like, catalytic core
30c5n9jA_



not modelled 15.3 12
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 14;
PDBTitle: core mediator of transcriptional regulation
31c1pscA_



not modelled 15.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:phosphotriesterase;
PDBTitle: phosphotriesterase from pseudomonas diminuta
32c2lh0B_



not modelled 14.9 23
PDB header:chaperone
Chain: B: PDB Molecule:histone chaperone rtt106;
PDBTitle: nmr structure of the histone-interacting n-terminal homodimeric region2 of rtt106
33d1j5ja_



not modelled 14.2 80
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
34c5z47A_



not modelled 14.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase;
PDBTitle: crystal structure of pyrrolidone carboxylate peptidase i with2 disordered loop a from deinococcus radiodurans r1
35c5vmdA_



not modelled 14.1 43
PDB header:ligase
Chain: A: PDB Molecule:f-box only protein 11;
PDBTitle: crystal structure of ubr-box from ubr6 in a domain-swapping2 conformation
36c3hy5A_



not modelled 13.6 13
PDB header:transport protein
Chain: A: PDB Molecule:retinaldehyde-binding protein 1;
PDBTitle: crystal structure of cralbp
37c3pk1A_



not modelled 13.4 25
PDB header:apoptosis/apoptosis regulator
Chain: A: PDB Molecule:induced myeloid leukemia cell differentiation protein mcl-
PDBTitle: crystal structure of mcl-1 in complex with the baxbh3 domain
38c6gfmA_



not modelled 13.3 30
PDB header:hydrolase
Chain: A: PDB Molecule:pyrimidine/purine nucleotide 5'-monophosphate nucleosidase;
PDBTitle: crystal structure of the escherichia coli nucleosidase ppnn (pppgpp-2 form)
39d1olma1



not modelled 13.2 13
Fold:RuvA C-terminal domain-like
Superfamily:CRAL/TRIO N-terminal domain
Family:CRAL/TRIO N-terminal domain
40c3ny1B_



not modelled 13.1 83
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase ubr1;
PDBTitle: structure of the ubr-box of the ubr1 ubiquitin ligase
41c3ebnD_



not modelled 12.9 17
PDB header:hydrolase
Chain: D: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping
42c2vofA_



not modelled 12.9 25
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
43c3omdB_



not modelled 12.7 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum
44c5vmdC_



not modelled 12.6 43
PDB header:ligase
Chain: C: PDB Molecule:f-box only protein 11;
PDBTitle: crystal structure of ubr-box from ubr6 in a domain-swapping2 conformation
45d1dx5i3



not modelled 12.5 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
46c5l87A_



not modelled 12.4 18
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
47d1v38a_



not modelled 12.3 19
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
48c3nkhB_



not modelled 12.1 10
PDB header:recombination
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
49c3ikoC_



not modelled 12.0 13
PDB header:structural protein, protein transport
Chain: C: PDB Molecule:nucleoporin nup84;
PDBTitle: crystal structure of the heterotrimeric sec13-nup145c-nup842 nucleoporin complex
50c2vm6A_



not modelled 11.6 25
PDB header:immune system
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: human bcl2-a1 in complex with bim-bh3 peptide
51c2a3vA_



not modelled 11.4 18
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase inti4;
PDBTitle: structural basis for broad dna-specificity in integron recombination
52c2k89A_



not modelled 11.3 12
PDB header:protein binding
Chain: A: PDB Molecule:phospholipase a-2-activating protein;
PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer)
53d1iyka1



not modelled 11.3 25
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
54c5w63A_



not modelled 11.2 33
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bax;
PDBTitle: crystal structure of channel catfish bax
55d1k9xa_



not modelled 11.0 8
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Neurolysin-like
56c5wddA_



not modelled 10.8 42
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related ovarian killer protein;
PDBTitle: crystal structure of chicken bok
57c2hqhE_



not modelled 10.8 67
PDB header:structural protein, protein binding
Chain: E: PDB Molecule:restin;
PDBTitle: crystal structure of p150glued and clip-170
58c3e2uE_



not modelled 10.8 67
PDB header:protein binding
Chain: E: PDB Molecule:cap-gly domain-containing linker protein 1;
PDBTitle: crystal structure of the zink-knuckle 2 domain of human clip-170 in2 complex with cap-gly domain of human dynactin-1 (p150-glued)
59c3e2uF_



not modelled 10.8 67
PDB header:protein binding
Chain: F: PDB Molecule:cap-gly domain-containing linker protein 1;
PDBTitle: crystal structure of the zink-knuckle 2 domain of human clip-170 in2 complex with cap-gly domain of human dynactin-1 (p150-glued)
60c5wosA_



not modelled 10.8 8
PDB header:viral protein
Chain: A: PDB Molecule:cnpv058 bcl-2 like protein;
PDBTitle: structural and functional insights into canarypox virus cnp0582 regulation of apoptosis
61d1g5ma_



not modelled 10.4 33
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
62c3e2uH_



not modelled 10.3 67
PDB header:protein binding
Chain: H: PDB Molecule:cap-gly domain-containing linker protein 1;
PDBTitle: crystal structure of the zink-knuckle 2 domain of human clip-170 in2 complex with cap-gly domain of human dynactin-1 (p150-glued)
63d2d2ja1



not modelled 10.3 11
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Phosphotriesterase-like
64c2vc7A_



not modelled 10.2 10
PDB header:hydrolase
Chain: A: PDB Molecule:aryldialkylphosphatase;
PDBTitle: structural basis for natural lactonase and promiscuous2 phosphotriesterase activities
65c3kkaD_



not modelled 10.1 26
PDB header:transferase
Chain: D: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: co-crystal structure of the sam domains of epha1 and epha2
66c2yv6A_



not modelled 10.1 30
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: crystal structure of human bcl-2 family protein bak
67c2k9uB_



not modelled 10.0 43
PDB header:structural protein
Chain: B: PDB Molecule:filamin-binding lim protein 1;
PDBTitle: solution nmr structure of the filamin-migfilin complex
68d1q59a_



not modelled 10.0 27
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
69c3mmiB_



not modelled 9.9 11
PDB header:motor protein
Chain: B: PDB Molecule:myosin-4;
PDBTitle: crystal structure of the globular tail of myo4p
70d1g1xb_



not modelled 9.9 15
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
71c5tzpA_



not modelled 9.7 0
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein fpv039;
PDBTitle: crystal structure of fpv039:bik bh3 complex
72c5ua4A_



not modelled 9.6 25
PDB header:apoptosis
Chain: A: PDB Molecule:5-hl;
PDBTitle: crystal structure of a179l:bid bh3 complex
73c3c1dA_



not modelled 9.6 17
PDB header:recombination, dna binding protein
Chain: A: PDB Molecule:regulatory protein recx;
PDBTitle: x-ray crystal structure of recx
74c6j4pB_



not modelled 9.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:small vasohibin-binding protein;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
75c2xa0A_



not modelled 9.4 33
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
76d1o0la_



not modelled 9.3 33
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
77c5vmnA_



not modelled 9.3 16
PDB header:viral protein
Chain: A: PDB Molecule:bak protein;
PDBTitle: crystal structure of grouper iridovirus giv66
78d2ponb1



not modelled 9.1 42
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
79d1zyla1



not modelled 9.0 26
Fold:Protein kinase-like (PK-like)
Superfamily:Protein kinase-like (PK-like)
Family:APH phosphotransferases
80c6exxA_



not modelled 8.9 10
PDB header:rna binding protein
Chain: A: PDB Molecule:protein pes4;
PDBTitle: crystal structure of pes4 rrm4
81d2fi0a1



not modelled 8.9 11
Fold:SP0561-like
Superfamily:SP0561-like
Family:SP0561-like
82d2d8ca1



not modelled 8.8 25
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
83c1v85A_



not modelled 8.6 17
PDB header:apoptosis
Chain: A: PDB Molecule:similar to ring finger protein 36;
PDBTitle: sterile alpha motif (sam) domain of mouse bifunctional2 apoptosis regulator
84d1wgna_



not modelled 8.5 13
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
85c3d5lA_



not modelled 8.5 17
PDB header:signaling protein
Chain: A: PDB Molecule:regulatory protein recx;
PDBTitle: crystal structure of regulatory protein recx
86d1qjta_



not modelled 8.5 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:Eps15 homology domain (EH domain)
87c3qbrA_



not modelled 8.4 25
PDB header:apoptosis
Chain: A: PDB Molecule:sjchgc06286 protein;
PDBTitle: bakbh3 in complex with sja
88c6mafC_



not modelled 8.4 29
PDB header:hydrolase
Chain: C: PDB Molecule:bbvci endonuclease subunit 2;
PDBTitle: native bbvci a2b2 tetramer at low resolution
89d1zo0a1



not modelled 8.4 35
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:Ornithine decarboxylase antizyme-like
90c3bs7A_



not modelled 8.3 6
PDB header:signaling protein
Chain: A: PDB Molecule:protein aveugle;
PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle
91c6jxaA_



not modelled 8.3 10
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase tel1;
PDBTitle: tel1 kinase compact monomer
92d1pq1a_



not modelled 8.2 42
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
93c2o2fA_



not modelled 8.1 40
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand
94d1iica1



not modelled 8.1 19
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-myristoyl transferase, NMT
95c3smtA_



not modelled 8.1 19
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd3;
PDBTitle: crystal structure of human set domain-containing protein3
96d2vl8a1



not modelled 8.0 28
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycosylating toxin catalytic domain-like
97c5hxyE_



not modelled 7.9 16
PDB header:recombination
Chain: E: PDB Molecule:tyrosine recombinase xera;
PDBTitle: crystal structure of xera recombinase
98d1ysga1



not modelled 7.9 50
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
99d1aoya_



not modelled 7.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain

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