Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2272_(-)_2545747_2546115
DateMon Aug 5 13:25:41 BST 2019
Unique Job IDdf1204fec672b713
SequenceVADDSNDTAT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.766 Y:23.857 Z:45.449
Model (left) based on template c3jbrE_
Top template information
PDB header:membrane protein
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-1 subunit;
PDBTitle: cryo-em structure of the rabbit voltage-gated calcium channel cav1.12 complex at 4.2 angstrom
Confidence and coverage
Confidence: 55.2% Coverage: 69%
84 residues ( 69% of your sequence) have been modelled with 55.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3jbrE_



55.2 7
PDB header:membrane protein
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-1 subunit;
PDBTitle: cryo-em structure of the rabbit voltage-gated calcium channel cav1.12 complex at 4.2 angstrom
2c4hr1A_



39.9 45
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of pav1-137, a protein from the virus pav1 that infects2 pyrococcus abyssi.
3c4ymkA_



34.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
4c2yevB_



29.6 3
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
5c6c4vA_



29.5 58
PDB header:transport protein
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: 1.9 angstrom resolution crystal structure of acyl carrier protein2 domain (residues 1350-1461) of polyketide synthase pks13 from3 mycobacterium tuberculosis
6c5ldxZ_



18.6 21
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class3.
7c5lc5Z_



18.6 21
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class2
8c5ldwZ_



18.6 21
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
9d1rh5b_



18.3 8
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
10d1o4ua2



16.0 35
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
11c6qj4E_



15.8 80
PDB header:cell cycle
Chain: E: PDB Molecule:condensin complex subunit 2;
PDBTitle: crystal structure of the c. thermophilum condensin ycs4-brn12 subcomplex bound to the smc4 atpase head in complex with the c-3 terminal domain of brn1
12c2l0gA_



14.1 36
PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
13c2khuA_



12.0 36
PDB header:transferase/protein binding
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna
PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota
14d1p4ea1



11.9 50
Fold:SAM domain-like
Superfamily:lambda integrase-like, N-terminal domain
Family:lambda integrase-like, N-terminal domain
15c3mk7F_



11.0 12
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
16c6an7D_



10.3 4
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
17c2mc7A_



9.7 10
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
18d2ipqx1



9.5 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:STY4665 C-terminal domain-like
19d1v97a2



9.4 33
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
20c3g43F_



9.2 50
PDB header:metal binding protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: crystal structure of the calmodulin-bound cav1.2 c-terminal regulatory2 domain dimer
21c6gcsW_



not modelled 8.9 18
PDB header:oxidoreductase
Chain: W: PDB Molecule:nb6m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
22c2mkvA_



not modelled 8.8 11
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
23c2vziB_



not modelled 8.4 28
PDB header:cell adhesion
Chain: B: PDB Molecule:alpha-parvin;
PDBTitle: crystal structure of the c-terminal calponin homology domain of alpha-2 parvin in complex with paxillin ld4 motif
24c2kwuA_



not modelled 8.2 23
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
25d1s7ba_



not modelled 8.0 14
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
26c1fftG_



not modelled 7.8 12
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
27c5o31Z_



not modelled 7.5 21
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: mitochondrial complex i in the deactive state
28c3oxqF_



not modelled 7.5 50
PDB header:metal binding protein/transport protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: crystal structure of ca2+/cam-cav1.2 pre-iq/iq domain complex
29c2jo1A_



not modelled 7.2 25
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
30c6cfwI_



not modelled 7.1 8
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
31c5xyiY_



not modelled 6.8 43
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein s24e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
32c3shgB_



not modelled 6.5 33
PDB header:transferase/protein binding
Chain: B: PDB Molecule:vbha;
PDBTitle: vbht fic protein from bartonella schoenbuchensis in complex with vbha2 antitoxin
33c1al0B_



not modelled 6.5 39
PDB header:virus
Chain: B: PDB Molecule:scaffolding protein gpb;
PDBTitle: procapsid of bacteriophage phix174
34c2retE_



not modelled 6.4 25
PDB header:protein transport
Chain: E: PDB Molecule:pseudopilin epsi;
PDBTitle: the crystal structure of a binary complex of two pseudopilins: epsi2 and epsj from the type 2 secretion system of vibrio vulnificus
35c5lnkq_



not modelled 6.4 21
PDB header:oxidoreductase
Chain: Q: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
36d1pdaa2



not modelled 6.3 13
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
37d1jroa2



not modelled 6.1 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
38d1dxxa1



not modelled 6.1 23
Fold:CH domain-like
Superfamily:Calponin-homology domain, CH-domain
Family:Calponin-homology domain, CH-domain
39d2reta1



not modelled 5.9 25
Fold:Pili subunits
Superfamily:Pili subunits
Family:GSPII I/J protein-like
40d1qlec_



not modelled 5.8 13
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
41c6nd1A_



not modelled 5.7 14
PDB header:protein transport
Chain: A: PDB Molecule:protein translocation protein sec63;
PDBTitle: cryoem structure of the sec complex from yeast
42c3wwtB_



not modelled 5.6 44
PDB header:transcription/viral protein
Chain: B: PDB Molecule:protein c';
PDBTitle: crystal structure of the y3:stat1nd complex
43c2k48A_



not modelled 5.2 40
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: nmr structure of the n-terminal coiled coil domain of the2 andes hantavirus nucleocapsid protein
44c3m7kA_



not modelled 5.2 100
PDB header:hydrolase/dna
Chain: A: PDB Molecule:restriction endonuclease paci;
PDBTitle: crystal structure of paci-dna enzyme product complex
45d1qcrd2



not modelled 5.2 80
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Cytochrome bc1 domain

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Transmembrane helix prediction 

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