Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2274c_(-)_2546498_2546815
DateMon Aug 5 13:25:41 BST 2019
Unique Job ID78d9a27be31fa8c4
SequenceMSIARSAQPI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.916 Y:17.518 Z:10.926
Model (left) based on template c2f8xM_
Top template information
PDB header:transcription/dna
Chain: M: PDB Molecule:mastermind-like protein 1;
PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence
Confidence and coverage
Confidence: 53.2% Coverage: 10%
11 residues ( 10% of your sequence) have been modelled with 53.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2f8xM_



53.2 82
PDB header:transcription/dna
Chain: M: PDB Molecule:mastermind-like protein 1;
PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence
2d2p10a1



42.0 39
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Mll9387-like
3c2p10D_



41.9 39
PDB header:hydrolase
Chain: D: PDB Molecule:mll9387 protein;
PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution
4d1wgea1



33.2 38
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
5c2nudD_



31.5 100
PDB header:toxin/protein binding
Chain: D: PDB Molecule:rpm1-interacting protein 4;
PDBTitle: the structure of the type iii effector avrb complexed with2 a high-affinity rin4 peptide
6c2nudC_



31.5 100
PDB header:toxin/protein binding
Chain: C: PDB Molecule:rpm1-interacting protein 4;
PDBTitle: the structure of the type iii effector avrb complexed with2 a high-affinity rin4 peptide
7c2jr7A_



29.0 43
PDB header:metal binding protein
Chain: A: PDB Molecule:dph3 homolog;
PDBTitle: solution structure of human desr1
8d1ywsa1



28.5 38
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
9c1xnlA_



24.9 44
PDB header:viral protein
Chain: A: PDB Molecule:membrane protein gp37;
PDBTitle: aslv fusion peptide
10c5wb8B_



24.5 78
PDB header:signaling protein
Chain: B: PDB Molecule:epigen;
PDBTitle: crystal structure of the epidermal growth factor receptor2 extracellular region in complex with epigen
11d1h4ua2



23.0 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-like domain of nidogen-1
12d3pmga4



22.8 37
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
13d1kfia4



21.9 37
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
14c4i3rG_



19.2 46
PDB header:viral protein/immune system
Chain: G: PDB Molecule:outer domain of hiv-1 gp120 (ker2018 od4.2.2);
PDBTitle: crystal structure of the outer domain of hiv-1 gp120 in complex with2 vrc-pg04 space group p3221
15c3j3iA_



18.9 56
PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: penicillium chrysogenum virus (pcv) capsid structure
16d5ruba1



15.7 21
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
17c9rubB_



14.8 25
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase;
PDBTitle: crystal structure of activated ribulose-1,5-bisphosphate carboxylase2 complexed with its substrate, ribulose-1,5-bisphosphate
18c3ctrA_



14.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of the rrm-domain of the poly(a)-specific2 ribonuclease parn bound to m7gtp
19c3dnoC_



13.5 50
PDB header:viral protein
Chain: C: PDB Molecule:hiv-1 envelope glycoprotein gp120;
PDBTitle: molecular structure for the hiv-1 gp120 trimer in the cd4-bound state
20d1ixsa_



13.1 50
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
21d2gp4a1



not modelled 12.9 25
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:IlvD/EDD C-terminal domain-like
22c6m8rL_



not modelled 12.6 35
PDB header:protein binding
Chain: L: PDB Molecule:gamma-aminobutyric acid type b receptor subunit 2;
PDBTitle: crystal structure of the kctd16 btb domain in complex with gabab22 peptide
23c6m8rK_



not modelled 12.4 35
PDB header:protein binding
Chain: K: PDB Molecule:gamma-aminobutyric acid type b receptor subunit 2;
PDBTitle: crystal structure of the kctd16 btb domain in complex with gabab22 peptide
24c2crcA_



not modelled 12.3 50
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin conjugating enzyme 7 interacting
PDBTitle: solution structure of the zf-ranbp domain of the protein2 hbv associated factor
25c1h4uA_



not modelled 12.0 43
PDB header:extracellular matrix protein
Chain: A: PDB Molecule:nidogen-1;
PDBTitle: domain g2 of mouse nidogen-1
26c5v8wG_



not modelled 11.7 57
PDB header:hydrolase
Chain: G: PDB Molecule:integrator complex subunit 9;
PDBTitle: crystal structure of human integrator ints9-ints11 ctd complex
27c2rusB_



not modelled 11.3 21
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:rubisco (ribulose-1,5-bisphosphate carboxylase(slash)
PDBTitle: crystal structure of the ternary complex of ribulose-1,5-bisphosphate2 carboxylase, mg(ii), and activator co2 at 2.3-angstroms resolution
28c5dn8A_



not modelled 10.6 13
PDB header:gtp-binding protein
Chain: A: PDB Molecule:gtpase der;
PDBTitle: 1.76 angstrom crystal structure of gtp-binding protein der from2 coxiella burnetii in complex with gdp.
29c1kioA_



not modelled 10.5 47
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease inhibitor i;
PDBTitle: solution structure of the small serine protease inhibitor2 sgci[l30r, k31m]
30c2l6lA_



not modelled 10.5 75
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 24;
PDBTitle: solution structure of human j-protein co-chaperone, dph4
31d1fo8a_



not modelled 10.5 71
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:N-acetylglucosaminyltransferase I
32c5e24D_



not modelled 10.1 22
PDB header:transport/dna binding/dna
Chain: D: PDB Molecule:protein hairless;
PDBTitle: structure of the su(h)-hairless-dna repressor complex
33c2mpjA_



not modelled 10.0 55
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:recql4-helicase-like protein;
PDBTitle: nmr structure of xenopus recq4 zinc knuckle
34c4djzH_



not modelled 9.8 39
PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:protease inhibitor sgpi-2;
PDBTitle: catalytic fragment of masp-1 in complex with its specific inhibitor2 developed by directed evolution on sgci scaffold
35c5a48B_



not modelled 9.4 30
PDB header:protein binding
Chain: B: PDB Molecule:maternal effect protein oskar;
PDBTitle: crystal structure of the lotus domain (aa 139-240) of drosophila2 oskar in p65
36d1mjsa_



not modelled 9.3 53
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
37c5c2gD_



not modelled 9.3 31
PDB header:lyase
Chain: D: PDB Molecule:form ii rubisco;
PDBTitle: gws1b rubisco: form ii rubisco derived from uncultivated2 gallionellacea species (cabp-bound).
38c2zkqn_



not modelled 9.2 50
PDB header:ribosomal protein/rna
Chain: N: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
39c3ngbI_



not modelled 9.1 50
PDB header:viral protein/immune system
Chain: I: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: crystal structure of broadly and potently neutralizing antibody vrc012 in complex with hiv-1 gp120
40c5te4G_



not modelled 8.9 50
PDB header:immune system
Chain: G: PDB Molecule:hiv-1 clade g strain x2088 gp120;
PDBTitle: crystal structure of broadly neutralizing vrc01-class antibody n6 in2 complex with hiv-1 clade g strain x2088 gp120 core
41c2yt2A_



not modelled 8.6 43
PDB header:signaling protein
Chain: A: PDB Molecule:fibroblast growth factor receptor substrate 3 and alk
PDBTitle: solution structure of the chimera of the ptb domain of snt-2 and 19-2 residue peptide (aa 1571-1589) of halk
42c5zwoW_



not modelled 8.5 14
PDB header:splicing
Chain: W: PDB Molecule:23 kda u4/u6.u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
43d1lm6a_



not modelled 8.4 75
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
44c3tbmA_



not modelled 8.3 50
PDB header:metal binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a type 4 cdgsh iron-sulfur protein.
45c4r9pA_



not modelled 8.3 40
PDB header:transcription
Chain: A: PDB Molecule:re28239p;
PDBTitle: an expansion to the smad mh2-family: the structure of the n-mh22 expanded domain
46c5a49I_



not modelled 8.2 24
PDB header:protein binding
Chain: I: PDB Molecule:maternal effect protein oskar;
PDBTitle: crystal structure of the lotus domain (aa 139-222) of2 drosophila oskar in c222
47c3b08H_



not modelled 8.2 71
PDB header:signaling protein/metal binding protein
Chain: H: PDB Molecule:ranbp-type and c3hc4-type zinc finger-containing protein 1;
PDBTitle: crystal structure of the mouse hoil1-l-nzf in complex with linear di-2 ubiquitin
48c1kqiA_



not modelled 8.1 50
PDB header:toxin
Chain: A: PDB Molecule:actx-hi:ob4219;
PDBTitle: nmr solution structure of the trans pro30 isomer of actx-2 hi:ob4219
49c6ohyA_



not modelled 8.1 50
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: chimpanzee siv env trimeric ectodomain.
50c3l87A_



not modelled 8.0 78
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: the crystal structure of smu.143c from streptococcus mutans ua159
51c2hjgA_



not modelled 8.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in complex with2 gdp
52d1kqha_



not modelled 7.8 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
53c3j38P_



not modelled 7.6 36
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
54d1ykwa1



not modelled 7.6 34
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
55c4kp2A_



not modelled 7.5 41
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase large subunit;
PDBTitle: crystal structure of homoaconitase large subunit from methanococcus2 jannaschii (mj1003)
56d2i9aa1



not modelled 7.4 47
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
57c5vbnB_



not modelled 7.2 27
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit
58d1yymg1



not modelled 7.2 50
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core
59c4nasD_



not modelled 7.2 28
PDB header:lyase
Chain: D: PDB Molecule:ribulose-bisphosphate carboxylase;
PDBTitle: the crystal structure of a rubisco-like protein (mtnw) from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
60c3j8gX_



not modelled 7.2 30
PDB header:ribosome
Chain: X: PDB Molecule:gtpase der;
PDBTitle: electron cryo-microscopy structure of enga bound with the 50s2 ribosomal subunit
61d1klil_



not modelled 7.1 46
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
62d1a8da2



not modelled 7.1 30
Fold:beta-Trefoil
Superfamily:STI-like
Family:Clostridium neurotoxins, C-terminal domain
63c2bf1A_



not modelled 7.0 42
PDB header:virus protein
Chain: A: PDB Molecule:exterior membrane glycoprotein gp120;
PDBTitle: structure of an unliganded and fully-glycosylated siv gp120 envelope2 glycoprotein
64c3bvoA_



not modelled 6.9 29
PDB header:chaperone
Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor;
PDBTitle: crystal structure of human co-chaperone protein hscb
65d1dd1a_



not modelled 6.8 39
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
66c6iicD_



not modelled 6.7 63
PDB header:virus
Chain: D: PDB Molecule:vp4 of mud crab dicistrovirus;
PDBTitle: cryoem structure of mud crab dicistrovirus
67c4nclB_



not modelled 6.7 18
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 5b-like protein;
PDBTitle: crystal structure of eukaryotic translation initiation factor eif5b2 (517-970) from chaetomium thermophilum in complex with gdp
68c3tvjI_



not modelled 6.6 33
PDB header:hydrolase
Chain: I: PDB Molecule:protease inhibitor sgpi-2;
PDBTitle: catalytic fragment of masp-2 in complex with its specific inhibitor2 developed by directed evolution on sgci scaffold
69c3ocaB_



not modelled 6.6 63
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of peptide deformylase from ehrlichia chaffeensis
70d1lm4a_



not modelled 6.6 78
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
71d1ygsa_



not modelled 6.5 39
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
72d1jhna4



not modelled 6.4 44
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Calnexin/calreticulin
73c4kp1A_



not modelled 6.4 46
PDB header:isomerase
Chain: A: PDB Molecule:isopropylmalate/citramalate isomerase large subunit;
PDBTitle: crystal structure of ipm isomerase large subunit from methanococcus2 jannaschii (mj0499)
74c3g6nA_



not modelled 6.3 78
PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of an efpdf complex with met-ala-ser
75c4uzjB_



not modelled 6.2 25
PDB header:hydrolase
Chain: B: PDB Molecule:notum;
PDBTitle: structure of the wnt deacylase notum from drosophila -2 crystal form i - 2.4a
76d1g7sa4



not modelled 6.2 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
77d1geha1



not modelled 6.2 24
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
78c5j84A_



not modelled 6.1 36
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase;
PDBTitle: crystal structure of l-arabinonate dehydratase in holo-form
79d1rbla1



not modelled 6.1 34
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
80c3jwdA_



not modelled 6.1 50
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 gp120 envelope glycoprotein;
PDBTitle: structure of hiv-1 gp120 with gp41-interactive region: layered2 architecture and basis of conformational mobility
81d1khxa_



not modelled 6.1 44
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
82c1khxA_



not modelled 6.1 44
PDB header:transcription
Chain: A: PDB Molecule:smad2;
PDBTitle: crystal structure of a phosphorylated smad2
83d1lqya_



not modelled 6.1 78
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
84d1wfla_



not modelled 6.0 50
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
85d1khua_



not modelled 6.0 47
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
86d1ju8a_



not modelled 5.9 60
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1
87c6gzuA_



not modelled 5.9 42
PDB header:transferase
Chain: A: PDB Molecule:conserved membrane protein;
PDBTitle: structure of chlamydia abortus effector protein chladub
88c3g5pB_



not modelled 5.8 44
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase, mitochondrial;
PDBTitle: structure and activity of human mitochondrial peptide deformylase, a2 novel cancer target
89c3rg0A_



not modelled 5.7 67
PDB header:chaperone
Chain: A: PDB Molecule:calreticulin;
PDBTitle: structural and functional relationships between the lectin and arm2 domains of calreticulin
90d1xeoa1



not modelled 5.7 63
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
91c3r0rA_



not modelled 5.7 36
PDB header:virus
Chain: A: PDB Molecule:porcine circovirus 2 (pcv2) capsid protein;
PDBTitle: the 2.3 a structure of porcine circovirus 2
92c1zy1B_



not modelled 5.7 100
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase, mitochondrial;
PDBTitle: x-ray structure of peptide deformylase from arabidopsis2 thaliana (atpdf1a) in complex with met-ala-ser
93c5hcfF_



not modelled 5.6 56
PDB header:chaperone
Chain: F: PDB Molecule:calreticulin, putative,calreticulin, putative;
PDBTitle: t. cruzi calreticulin globular domain
94c3fk4A_



not modelled 5.5 14
PDB header:isomerase
Chain: A: PDB Molecule:rubisco-like protein;
PDBTitle: crystal structure of rubisco-like protein from bacillus2 cereus atcc 14579
95d1bwva1



not modelled 5.5 34
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
96c5tpjA_



not modelled 5.5 29
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
97c3uwaA_



not modelled 5.4 63
PDB header:hydrolase
Chain: A: PDB Molecule:riia-riib membrane-associated protein;
PDBTitle: crystal structure of a probable peptide deformylase from synechococcus2 phage s-ssm7
98c5hcaB_



not modelled 5.4 56
PDB header:sugar binding protein
Chain: B: PDB Molecule:calreticulin,calreticulin;
PDBTitle: globular domain of the entamoeba histolytica calreticulin in complex2 with glucose
99d2b4cg1



not modelled 5.4 50
Fold:gp120 core
Superfamily:gp120 core
Family:gp120 core

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