Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2281_(pitB)_2553183_2554841
DateMon Aug 5 13:25:42 BST 2019
Unique Job IDe1d8db22c3869213
SequenceMSDNAKHHRD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.583 Y:39.931 Z:59.913
Model (left) based on template c2w2eA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
Confidence and coverage
Confidence: 73.1% Coverage: 33%
181 residues ( 33% of your sequence) have been modelled with 73.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2w2eA_



73.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
2d1j4na_



64.2 17
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
3c4r0cB_



61.9 11
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
4d1fx8a_



40.6 17
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
5c6eu6A_



34.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
6c2ia2D_



25.1 15
PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1
7c1ldaA_



23.4 17
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
8c2b6pA_



20.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
9c4g1uB_



17.9 18
PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:hemin transport system permease protein hmuu;
PDBTitle: x-ray structure of the bacterial heme transporter hmuuv from yersinia2 pestis
10c2g7uB_



17.7 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
11c2bruC_



17.4 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase
12c2nuuF_



17.3 19
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
13d1d4oa_



15.9 42
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
14c1pt9B_



15.8 42
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
15d1pnoa_



15.6 42
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
16c3r4kD_



15.2 15
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
17c1mkmA_



13.8 22
PDB header:transcription
Chain: A: PDB Molecule:iclr transcriptional regulator;
PDBTitle: crystal structure of the thermotoga maritima iclr
18c2f2bA_



13.3 16
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin aqpm;
PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution
19c2xroE_



13.2 30
PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
20d2qapa1



12.4 31
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
21c2qapC_



not modelled 12.2 31
PDB header:lyase
Chain: C: PDB Molecule:fructose-1,6-bisphosphate aldolase;
PDBTitle: fructose-1,6-bisphosphate aldolase from leishmania mexicana
22c6c6lN_



not modelled 12.1 16
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
23c5tjjA_



not modelled 12.0 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
24c3c02A_



not modelled 11.9 15
PDB header:membrane protein
Chain: A: PDB Molecule:aquaglyceroporin;
PDBTitle: x-ray structure of the aquaglyceroporin from plasmodium falciparum
25c2kncA_



not modelled 11.4 10
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
26c5h1aC_



not modelled 10.8 30
PDB header:transcription regulator
Chain: C: PDB Molecule:iclr transcription factor homolog;
PDBTitle: crystal structure of an iclr homolog from microbacterium sp. strain2 hm58-2
27c2o0yB_



not modelled 10.3 11
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
28c5whmB_



not modelled 10.2 22
PDB header:transcription
Chain: B: PDB Molecule:iclr family transcriptional regulator;
PDBTitle: crystal structure of iclr family transcriptional regulator from2 brucella abortus
29c3mmtC_



not modelled 10.1 33
PDB header:hydrolase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: crystal structure of fructose bisphosphate aldolase from bartonella2 henselae, bound to fructose bisphosphate
30c3d9sB_



not modelled 9.6 15
PDB header:membrane protein
Chain: B: PDB Molecule:aquaporin-5;
PDBTitle: human aquaporin 5 (aqp5) - high resolution x-ray structure
31c5y6iB_



not modelled 9.5 26
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of pseudomonas aeruginosa hmgr
32c4o9uB_



not modelled 9.2 23
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
33d1mkma1



not modelled 9.0 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
34d1a5ca_



not modelled 8.5 29
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
35c4od5C_



not modelled 7.5 14
PDB header:transferase
Chain: C: PDB Molecule:4-hydroxybenzoate octaprenyltransferase;
PDBTitle: substrate-bound structure of a ubia homolog from aeropyrum pernix k1
36d1f2ja_



not modelled 7.3 33
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
37c6cfwI_



not modelled 7.1 24
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
38d1s7ba_



not modelled 6.9 22
Fold:Multidrug resistance efflux transporter EmrE
Superfamily:Multidrug resistance efflux transporter EmrE
Family:Multidrug resistance efflux transporter EmrE
39c3s0xB_



not modelled 6.2 16
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase a24b, flak domain protein;
PDBTitle: the crystal structure of gxgd membrane protease flak
40c2vm6A_



not modelled 6.1 18
PDB header:immune system
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: human bcl2-a1 in complex with bim-bh3 peptide
41d1u7ga_



not modelled 6.1 21
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
42c5w1eA_



not modelled 6.0 19
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: pobr in complex with phb
43c5ua4A_



not modelled 5.9 16
PDB header:apoptosis
Chain: A: PDB Molecule:5-hl;
PDBTitle: crystal structure of a179l:bid bh3 complex
44c2vofA_



not modelled 5.8 19
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
45c2k1aA_



not modelled 5.8 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
46c4o9tH_



not modelled 5.7 23
PDB header:membrane protein
Chain: H: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
47d1fdja_



not modelled 5.6 31
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
48c2pc4B_



not modelled 5.5 29
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: crystal structure of fructose-bisphosphate aldolase from plasmodium2 falciparum in complex with trap-tail determined at 2.4 angstrom3 resolution
49d2f6ua1



not modelled 5.5 16
Fold:TIM beta/alpha-barrel
Superfamily:FMN-linked oxidoreductases
Family:FMN-linked oxidoreductases
50c5aexB_



not modelled 5.5 24
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
51d1v8ba2



not modelled 5.3 17
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
52c2d57A_



not modelled 5.3 12
PDB header:transport protein
Chain: A: PDB Molecule:aquaporin-4;
PDBTitle: double layered 2d crystal structure of aquaporin-4 (aqp4m23) at 3.2 a2 resolution by electron crystallography
53c6h1nA_



not modelled 5.2 14
PDB header:apoptosis
Chain: A: PDB Molecule:bcl2-like 10 (apoptosis facilitator);
PDBTitle: crystal structure of a zebra-fish pro-survival protein nrz-apo
54d1xfba1



not modelled 5.1 31
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
55c4huqS_



not modelled 5.1 16
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
56d1ybea1



not modelled 5.0 27
Fold:TIM beta/alpha-barrel
Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like
Family:Monomeric nicotinate phosphoribosyltransferase C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below