Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2287_(yjcE)_2559713_2561341
DateMon Aug 5 13:25:42 BST 2019
Unique Job ID0a91b3e1f9743528
SequenceMNGRRTIGED ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.010 Y:61.652 Z:60.974
Model (left) based on template c4czbB_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: structure of the sodium proton antiporter mjnhap1 from2 methanocaldococcus jannaschii at ph 8.
Confidence and coverage
Confidence:100.0% Coverage: 73%
394 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4czbB_
100.0 18
PDB header:membrane protein
Chain: B: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: structure of the sodium proton antiporter mjnhap1 from2 methanocaldococcus jannaschii at ph 8.
2c4cz8A_
100.0 24
PDB header:membrane protein
Chain: A: PDB Molecule:na+/h+ antiporter, putative;
PDBTitle: structure of the sodium proton antiporter panhap from2 pyrococcus abyssii at ph 8.
3c5bz3A_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: crystal structure of sodium proton antiporter napa in outward-facing2 conformation.
4c4bwzA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: crystal structure of the sodium proton antiporter, napa
5c1zcdA_
99.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter 1;
PDBTitle: crystal structure of the na+/h+ antiporter nhaa
6c2mdfA_
98.8 27
PDB header:proton transport
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: nmr structure of a two-transmembrane segment tm vi-vii of nhe1
7c4n7wA_
97.5 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
8c2l0eA_
90.0 21
PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger
9c2kbvA_
79.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger
10c6nd1E_
77.2 14
PDB header:protein transport
Chain: E: PDB Molecule:translocation protein sec66;
PDBTitle: cryoem structure of the sec complex from yeast
11c6b8hb_
75.0 11
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit alpha, mitochondrial;
PDBTitle: mosaic model of yeast mitochondrial atp synthase monomer
12c6j5ib_
59.0 13
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit alpha, mitochondrial;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
13c6n3qE_
58.9 17
PDB header:transport protein
Chain: E: PDB Molecule:translocation protein sec66;
PDBTitle: cryo-em structure of the yeast sec complex
14c6iu3A_
51.3 13
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
15c4k1cB_
50.1 12
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
16c4k1cA_
48.6 13
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
17d1vqop1
45.7 17
Fold:Ribosomal protein L19 (L19e)
Superfamily:Ribosomal protein L19 (L19e)
Family:Ribosomal protein L19 (L19e)
18c5l0wA_
45.4 20
PDB header:membrane protein
Chain: A: PDB Molecule:sec71;
PDBTitle: structure of post-translational translocation sec71/sec72 complex
19c2htgA_
41.2 33
PDB header:membrane protein
Chain: A: PDB Molecule:nhe1 isoform of na+/h+ exchanger 1;
PDBTitle: structural and functional characterization of tm vii of the2 nhe1 isoform of the na+/h+ exchanger
20c3j21Q_
40.3 19
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l19e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
21c4a1cO_
not modelled 39.8 14
PDB header:ribosome
Chain: O: PDB Molecule:rpl19;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
22c2k3cA_
not modelled 37.9 31
PDB header:metal transport
Chain: A: PDB Molecule:tmix peptide;
PDBTitle: structural and functional characterization of tm ix of the2 nhe1 isoform of the na+/h+ exchanger
23c4a17O_
not modelled 37.4 14
PDB header:ribosome
Chain: O: PDB Molecule:rpl19;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
24d1f6ga_
not modelled 35.4 11
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
25c3j39R_
not modelled 34.9 15
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l19;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
26c2zkrp_
not modelled 34.3 14
PDB header:ribosomal protein/rna
Chain: P: PDB Molecule:rna expansion segment es31 part i;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
27d2csba1
not modelled 32.6 5
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
28c5a1sB_
not modelled 31.5 17
PDB header:transport protein
Chain: B: PDB Molecule:citrate-sodium symporter;
PDBTitle: crystal structure of the sodium-dependent citrate symporter secits2 form salmonella enterica.
29c3iz5T_
not modelled 30.7 11
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
30c2zv4O_
not modelled 29.8 13
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
31c4b6aR_
not modelled 29.4 20
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l19-b;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
32c4a1eO_
not modelled 29.0 14
PDB header:ribosome
Chain: O: PDB Molecule:rpl19;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
33c3zf7T_
not modelled 28.6 23
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
34c6fkip_
not modelled 27.9 7
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
35c3hzsA_
not modelled 27.9 13
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin
36c6b3rE_
not modelled 27.7 5
PDB header:transport protein
Chain: E: PDB Molecule:piezo-type mechanosensitive ion channel component 1;
PDBTitle: structure of the mechanosensitive channel piezo1
37d2nwwa1
not modelled 27.1 14
Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
38c2m7xA_
not modelled 25.1 11
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: structural and functional analysis of transmembrane segment iv of the2 salt tolerance protein sod2
39c6epgD_
not modelled 25.0 13
PDB header:toxin
Chain: D: PDB Molecule:zeta_1 toxin;
PDBTitle: structure of the epsilon_1 / zeta_1 antitoxin / toxin system from2 neisseria gonorrhoeae.
40c3f0cA_
not modelled 24.3 6
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
41c5nugB_
not modelled 20.3 8
PDB header:motor protein
Chain: B: PDB Molecule:cytoplasmic dynein 1 heavy chain 1;
PDBTitle: motor domains from human cytoplasmic dynein-1 in the phi-particle2 conformation
42c5arhT_
not modelled 20.2 14
PDB header:hydrolase
Chain: T: PDB Molecule:atp synthase f(0) complex subunit b1, mitochondrial;
PDBTitle: bovine mitochondrial atp synthase state 2a
43c6eznH_
not modelled 19.6 16
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
44c4l6rA_
not modelled 19.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562 and glucagon receptor chimera;
PDBTitle: structure of the class b human glucagon g protein coupled receptor
45c6iiuA_
not modelled 19.1 19
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
46c1y4cA_
not modelled 17.1 9
PDB header:de novo protein
Chain: A: PDB Molecule:maltose binding protein fused with designed
PDBTitle: designed helical protein fusion mbp
47c5lqyV_
not modelled 16.8 14
PDB header:hydrolase
Chain: V: PDB Molecule:atp synthase subunit b;
PDBTitle: structure of f-atpase from pichia angusta, in state2
48d2bfda1
not modelled 16.8 7
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase PP module
49c3aqpB_
not modelled 16.7 21
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
50c5z96C_
not modelled 16.6 11
PDB header:membrane protein
Chain: C: PDB Molecule:short transient receptor potential channel 4;
PDBTitle: structure of the mouse trpc4 ion channel
51d1umda_
not modelled 16.3 6
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase PP module
52c5mqfQ_
not modelled 15.2 9
PDB header:splicing
Chain: Q: PDB Molecule:protein bud31 homolog;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
53c5xamA_
not modelled 14.6 18
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
54c2yicC_
not modelled 14.4 16
PDB header:lyase
Chain: C: PDB Molecule:2-oxoglutarate decarboxylase;
PDBTitle: crystal structure of the suca domain of mycobacterium smegmatis2 alpha-ketoglutarate decarboxylase (triclinic form)
55c3vuqD_
not modelled 13.2 10
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (tetr/acrr family);
PDBTitle: crystal structure of ttha0167, a transcriptional regulator, tetr/acrr2 family from thermus thermophilus hb8
56c4gctA_
not modelled 13.1 8
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:nucleoid occlusion factor slma;
PDBTitle: structure of no factor protein-dna complex
57c4q28B_
not modelled 12.5 25
PDB header:structural protein
Chain: B: PDB Molecule:periplakin;
PDBTitle: crystal structure of the plectin 1 and 2 repeats of the human2 periplakin. northeast structural genomics consortium (nesg) target3 hr9083a
58c3aygA_
not modelled 12.0 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
59c5t4oJ_
not modelled 11.9 13
PDB header:hydrolase
Chain: J: PDB Molecule:atp synthase subunit b;
PDBTitle: autoinhibited e. coli atp synthase state 1
60c3exmA_
not modelled 11.8 8
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase sc4828;
PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp
61c3thzA_
not modelled 11.7 12
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna mismatch repair protein msh2;
PDBTitle: human mutsbeta complexed with an idl of 6 bases (loop6) and adp
62c6flnE_
not modelled 11.6 11
PDB header:protein binding
Chain: E: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: crystal structure of the human trim25 coiled-coil and pryspry domains
63c6c9aB_
not modelled 11.6 12
PDB header:membrane protein
Chain: B: PDB Molecule:two pore calcium channel protein 1;
PDBTitle: cryo-em structure of mouse tpc1 channel in the ptdins(3,5)p2-bound2 state
64c4jkvA_
not modelled 11.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562, smoothened homolog;
PDBTitle: structure of the human smoothened 7tm receptor in complex with an2 antitumor agent
65c4k0eA_
not modelled 10.7 13
PDB header:transport protein
Chain: A: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
66c4cg4D_
not modelled 10.7 7
PDB header:actin-binding protein
Chain: D: PDB Molecule:pyrin;
PDBTitle: crystal structure of the chs-b30.2 domains of trim20
67c1y4eA_
not modelled 10.4 24
PDB header:membrane protein
Chain: A: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: nmr structure of transmembrane segment iv of the nhe12 isoform of the na+/h+ exchanger
68c2i10A_
not modelled 10.3 10
PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
69d2oeza1
not modelled 10.2 24
Fold:YacF-like
Superfamily:YacF-like
Family:YacF-like
70c4n6hA_
not modelled 9.9 16
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, delta-type opioid receptor
PDBTitle: 1.8 a structure of the human delta opioid 7tm receptor (psi community2 target)
71d2c0sa1
not modelled 9.7 6
Fold:ROP-like
Superfamily:BAS1536-like
Family:BAS1536-like
72c5c4iC_
not modelled 9.2 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxalate oxidoreductase subunit beta;
PDBTitle: structure of an oxalate oxidoreductase
73c6cnmA_
not modelled 9.1 8
PDB header:membrane protein
Chain: A: PDB Molecule:intermediate conductance calcium-activated potassium
PDBTitle: cryo-em structure of the human sk4/calmodulin channel complex
74c5zdnA_
not modelled 9.1 3
PDB header:hydrolase
Chain: A: PDB Molecule:fomd;
PDBTitle: the complex structure of fomd with cdp
75c4dncD_
not modelled 9.0 29
PDB header:transcription
Chain: D: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of human mof in complex with msl1
76c2lx0A_
not modelled 9.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
77c6fkib_
not modelled 8.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit beta, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
78d2oqoa1
not modelled 8.6 13
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:PBP transglycosylase domain-like
79c6b87C_
not modelled 8.5 23
PDB header:membrane protein
Chain: C: PDB Molecule:tmhc2_e;
PDBTitle: crystal structure of transmembrane protein tmhc2_e
80c3kltB_
not modelled 8.5 18
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of a vimentin fragment
81c2my1A_
not modelled 8.4 13
PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor bud31;
PDBTitle: solution structure of bud31p
82c2g7sA_
not modelled 8.4 6
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens
83c5eulE_
not modelled 8.4 17
PDB header:protein transport
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: structure of the seca-secy complex with a translocating polypeptide2 substrate
84c3vmtA_
not modelled 8.4 13
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: crystal structure of staphylococcus aureus membrane-bound2 transglycosylase in complex with a lipid ii analog
85c2l2lA_
not modelled 8.3 28
PDB header:transferase
Chain: A: PDB Molecule:transcriptional repressor p66-alpha;
PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha
86c6qajB_
not modelled 8.3 10
PDB header:nuclear protein
Chain: B: PDB Molecule:endolysin,transcription intermediary factor 1-beta;
PDBTitle: structure of the tripartite motif of kap1/trim28
87c5dkoA_
not modelled 8.2 18
PDB header:replication
Chain: A: PDB Molecule:cell division protein zapd;
PDBTitle: the structure of escherichia coli zapd
88d1w85a_
not modelled 8.2 5
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase PP module
89c3t57A_
not modelled 8.1 11
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine o-acyltransferase domain-containing
PDBTitle: activity and crystal structure of arabidopsis udp-n-acetylglucosamine2 acyltransferase
90c6ayiA_
not modelled 8.1 8
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator uidr;
PDBTitle: escherichia coli gusr
91c5j3nA_
not modelled 8.0 11
PDB header:hydrolase
Chain: A: PDB Molecule:green fluorescent protein,hsdr;
PDBTitle: c-terminal domain of ecor124i hsdr subunit fused with the ph-sensitive2 gfp variant ratiometric phluorin
92d1zk8a2
not modelled 8.0 10
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
93c5cbfA_
not modelled 7.8 14
PDB header:transport protein
Chain: A: PDB Molecule:ion transport 2 domain protein;
PDBTitle: structural and functional characterization of a calcium-activated2 cation channel from tsukamurella paurometabola
94c1vi0B_
not modelled 7.8 10
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
95c3jb9e_
not modelled 7.7 16
PDB header:rna binding protein/rna
Chain: E: PDB Molecule:small nuclear ribonucleoprotein-associated protein b;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
96c1yo7A_
not modelled 7.7 11
PDB header:replication regulator
Chain: A: PDB Molecule:regulatory protein rop;
PDBTitle: re-engineering topology of the homodimeric rop protein into a single-2 chain 4-helix bundle
97d1i0aa_
not modelled 7.7 9
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
98c5hg1A_
not modelled 7.7 22
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:hexokinase-2;
PDBTitle: crystal structure of human hexokinase 2 with cmpd 1, a c-2-substituted2 glucosamine
99c5frgA_
not modelled 7.6 10
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below