Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2289_(cdh)_2561685_2562467
DateMon Aug 5 13:25:43 BST 2019
Unique Job IDc612d6fd7ba61fb2
SequenceVPKSRRAVSL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.407 Y:38.522 Z:54.007
Model (left) based on template d2pofa1
Top template information
Fold:HIT-like
Superfamily:HIT-like
Family:CDH-like
Confidence and coverage
Confidence:100.0% Coverage: 84%
218 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2pofa1



100.0 29
Fold:HIT-like
Superfamily:HIT-like
Family:CDH-like
2c4q61J_



96.7 17
PDB header:cell cycle
Chain: J: PDB Molecule:uncharacterized hit-like protein hp_0404;
PDBTitle: hit like protein from helicobacter pylori 26695
3c4incA_



96.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad nucleotide-binding protein 2,
PDBTitle: human histidine triad nucleotide binding protein 2
4c3n1tE_



96.3 12
PDB header:hydrolase
Chain: E: PDB Molecule:hit-like protein hint;
PDBTitle: crystal structure of the h101a mutant echint gmp complex
5d1xqua_



96.0 19
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
6c1xquA_



96.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:hit family hydrolase;
PDBTitle: hit family hydrolase from clostridium thermocellum cth-393
7d1rzya_



95.7 15
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
8c6d6jB_



95.6 20
PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of hit family hydrolase from legionella pneumophila2 philadelphia 1
9c3anoA_



95.5 15
PDB header:transferase
Chain: A: PDB Molecule:ap-4-a phosphorylase;
PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv
10c3lb5B_



95.5 16
PDB header:cell cycle
Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation;
PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand
11c6iq1A_



95.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine 5'-monophosphoramidase;
PDBTitle: crystal structure of histidine triad nucleotide-binding protein from2 candida albicans
12c1emsB_



95.3 15
PDB header:antitumor protein
Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein;
PDBTitle: crystal structure of the c. elegans nitfhit protein
13d1emsa1



95.3 15
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
14d1kpfa_



95.3 16
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
15c4eguA_



95.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:histidine triad (hit) protein;
PDBTitle: 0.95a resolution structure of a histidine triad protein from2 clostridium difficile
16c4ndgB_



95.0 15
PDB header:dna binding protein/rna/dna
Chain: B: PDB Molecule:aprataxin;
PDBTitle: human aprataxin (aptx) bound to rna-dna and zn - adenosine vanadate2 transition state mimic complex
17c3oj7A_



94.9 21
PDB header:metal binding protein
Chain: A: PDB Molecule:putative histidine triad family protein;
PDBTitle: crystal structure of a histidine triad family protein from entamoeba2 histolytica, bound to sulfate
18d1z84a2



94.8 14
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
19d1vlra1



94.7 16
Fold:HIT-like
Superfamily:HIT-like
Family:mRNA decapping enzyme DcpS C-terminal domain
20c3l7xA_



94.6 13
PDB header:cell cycle
Chain: A: PDB Molecule:putative hit-like protein involved in cell-cycle
PDBTitle: the crystal structure of smu.412c from streptococcus mutans ua159
21c3ksvA_



not modelled 94.3 18
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: hypothetical protein from leishmania major
22d3bl9a1



not modelled 94.1 16
Fold:HIT-like
Superfamily:HIT-like
Family:mRNA decapping enzyme DcpS C-terminal domain
23d1fita_



not modelled 94.1 14
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
24c3bl9B_



not modelled 93.7 16
PDB header:hydrolase
Chain: B: PDB Molecule:scavenger mrna-decapping enzyme dcps;
PDBTitle: synthetic gene encoded dcps bound to inhibitor dg157493
25c2eo4A_



not modelled 93.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:150aa long hypothetical histidine triad nucleotide-binding
PDBTitle: crystal structure of hypothetical histidine triad nucleotide-binding2 protein st2152 from sulfolobus tokodaii strain7
26c3r6fA_



not modelled 92.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:hit family protein;
PDBTitle: crystal structure of a zinc-containing hit family protein from2 encephalitozoon cuniculi
27c3o0mB_



not modelled 92.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:hit family protein;
PDBTitle: crystal structure of a zn-bound histidine triad family protein from2 mycobacterium smegmatis
28c1xmlA_



not modelled 92.4 16
PDB header:chaperone
Chain: A: PDB Molecule:heat shock-like protein 1;
PDBTitle: structure of human dcps
29c3splC_



not modelled 91.7 10
PDB header:hydrolase/dna
Chain: C: PDB Molecule:aprataxin-like protein;
PDBTitle: crystal structure of aprataxin ortholog hnt3 in complex with dna and2 amp
30c5cs2A_



not modelled 91.4 16
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad protein;
PDBTitle: crystal structure of plasmodium falciparum diadenosine triphosphate2 hydrolase in complex with cyclomarin a
31d1guqa2



not modelled 90.8 19
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
32c3imiB_



not modelled 90.7 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hit family protein;
PDBTitle: 2.01 angstrom resolution crystal structure of a hit family protein2 from bacillus anthracis str. 'ames ancestor'
33d1y23a_



not modelled 90.6 15
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
34c3p0tB_



not modelled 89.7 17
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an hit-like protein from mycobacterium2 paratuberculosis
35c1zwjA_



not modelled 88.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative galactose-1-phosphate uridyl transferase;
PDBTitle: x-ray structure of galt-like protein from arabidopsis thaliana2 at5g18200
36c3i24B_



not modelled 87.5 17
PDB header:hydrolase
Chain: B: PDB Molecule:hit family hydrolase;
PDBTitle: crystal structure of a hit family hydrolase protein from vibrio2 fischeri. northeast structural genomics consortium target id vfr176
37d2oika1



not modelled 86.6 15
Fold:HIT-like
Superfamily:HIT-like
Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins
38c3nrdB_



not modelled 83.5 12
PDB header:nucleotide binding protein
Chain: B: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution
39c3i4sB_



not modelled 82.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:histidine triad protein;
PDBTitle: crystal structure of histidine triad protein blr8122 from2 bradyrhizobium japonicum
40c3oheA_



not modelled 81.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:histidine triad (hit) protein;
PDBTitle: crystal structure of a histidine triad protein (maqu_1709) from2 marinobacter aquaeolei vt8 at 1.20 a resolution
41c5bv3C_



not modelled 79.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:m7gpppx diphosphatase;
PDBTitle: yeast scavenger decapping enzyme in complex with m7gdp
42c1gupC_



not modelled 79.3 20
PDB header:nucleotidyltransferase
Chain: C: PDB Molecule:galactose-1-phosphate uridylyltransferase;
PDBTitle: structure of nucleotidyltransferase complexed with udp-2 galactose
43c6gbsB_



not modelled 76.2 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative mrna decapping protein;
PDBTitle: crystal structure of the c. themophilum scavenger decapping enzyme2 dcps apo form
44c5in3A_



not modelled 66.7 16
PDB header:transferase
Chain: A: PDB Molecule:galactose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of glucose-1-phosphate bound nucleotidylated human2 galactose-1-phosphate uridylyltransferase
45d1z84a1



not modelled 40.7 10
Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
46c3bdlA_



not modelled 34.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:staphylococcal nuclease domain-containing
PDBTitle: crystal structure of a truncated human tudor-sn
47d1rkna_



not modelled 33.9 11
Fold:OB-fold
Superfamily:Staphylococcal nuclease
Family:Staphylococcal nuclease
48c3jb9c_



not modelled 33.6 14
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:u5 snrna;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
49d2soba_



not modelled 33.1 12
Fold:OB-fold
Superfamily:Staphylococcal nuclease
Family:Staphylococcal nuclease
50c4i5wA_



not modelled 30.5 21
PDB header:transferase
Chain: A: PDB Molecule:5',5'''-p-1,p-4-tetraphosphate phosphorylase 2;
PDBTitle: crystal structure of yeast ap4a phosphorylase apa2 in complex with amp
51c6ii7A_



not modelled 26.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase;
PDBTitle: crystal structure of plasmodium falciparum adenosine deaminase2 c27q+l227i mutant co-complexed with zn ion, hypoxanthine and inosine
52c2jvaA_



not modelled 26.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase domain protein;
PDBTitle: nmr solution structure of peptidyl-trna hydrolase domain protein from2 pseudomonas syringae pv. tomato. northeast structural genomics3 consortium target psr211
53c2lufA_



not modelled 24.8 31
PDB header:de novo protein
Chain: A: PDB Molecule:retro trp-cage peptide;
PDBTitle: retro trp-cage peptide
54d1vdla_



not modelled 24.1 45
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
55d2amxa1



not modelled 21.3 19
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Adenosine/AMP deaminase
56c6n91A_



not modelled 20.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase;
PDBTitle: crystal structure of adenosine deaminase from vibrio cholerae2 complexed with pentostatin (deoxycoformycin)
57c3gwhB_



not modelled 18.8 18
PDB header:transcription
Chain: B: PDB Molecule:transcriptional antiterminator (bglg family);
PDBTitle: crystallographic ab initio protein solution far below atomic2 resolution
58d1qpma_



not modelled 18.4 0
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
59d1tnsa_



not modelled 17.0 13
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
60d1k8kd2



not modelled 15.2 36
Fold:Secretion chaperone-like
Superfamily:Arp2/3 complex subunits
Family:Arp2/3 complex subunits
61c4walA_



not modelled 14.7 24
PDB header:protein binding/rna
Chain: A: PDB Molecule:branchpoint-bridging protein;
PDBTitle: crystal structure of selenomethionine msl5 protein in complex with rna2 at 2.2 a
62c5el3D_



not modelled 14.7 24
PDB header:rna binding protein
Chain: D: PDB Molecule:kh domain-containing, rna-binding, signal transduction-
PDBTitle: structure of the kh domain of t-star
63c3dwlI_



not modelled 14.4 27
PDB header:structural protein
Chain: I: PDB Molecule:actin-related protein 2/3 complex subunit 2;
PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit
64c2i34B_



not modelled 12.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:acid phosphatase;
PDBTitle: the crystal structure of class c acid phosphatase from bacillus2 anthracis with tungstate bound
65c4qpiA_



not modelled 12.2 32
PDB header:virus
Chain: A: PDB Molecule:capsid protein vp1;
PDBTitle: crystal structure of hepatitis a virus
66c3u1dA_



not modelled 11.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei.
67d1jz8a1



not modelled 11.5 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
68c3dnlB_



not modelled 11.4 18
PDB header:viral protein
Chain: B: PDB Molecule:hiv-1 envelope glycoprotein gp120;
PDBTitle: molecular structure for the hiv-1 gp120 trimer in the b12-bound state
69c5eltB_



not modelled 11.3 30
PDB header:rna binding protein
Chain: B: PDB Molecule:kh domain-containing, rna-binding, signal transduction-
PDBTitle: structure of the qua1-kh domain of t-star in complex with uaau rna
70d1tafa_



not modelled 11.1 15
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
71d1yq2a2



not modelled 11.0 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
72c2lvaA_



not modelled 11.0 55
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 28;
PDBTitle: nmr solution structure of the n-terminal domain of human usp28,2 northeast structural genomics consortium target ht8470a
73c4gxwA_



not modelled 10.9 29
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase;
PDBTitle: crystal structure of a cog1816 amidohydrolase (target efi-505188) from2 burkhoderia ambifaria, with bound zn
74c2muxA_



not modelled 10.9 50
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 25;
PDBTitle: sumo2 non-covalently interacts with usp25 and downregulates its2 activity
75d1snoa_



not modelled 10.7 16
Fold:OB-fold
Superfamily:Staphylococcal nuclease
Family:Staphylococcal nuclease
76c6giyA_



not modelled 10.0 20
PDB header:structural protein
Chain: A: PDB Molecule:tssf;
PDBTitle: the baseplate complex from the type vi secretion system
77c2rrlA_



not modelled 10.0 16
PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik
78c2lugA_



not modelled 9.8 50
PDB header:lipid binding protein
Chain: A: PDB Molecule:myelin basic protein;
PDBTitle: solution nmr structure of a s72-s107 peptide of 18.5kda murine myelin2 basic protein (mbp) in association with dodecylphosphocholine3 micelles
79d2fnaa1



not modelled 9.8 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Helicase DNA-binding domain
80d1a4ma_



not modelled 9.8 24
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Adenosine/AMP deaminase
81c2p9lD_



not modelled 9.8 36
PDB header:structural protein
Chain: D: PDB Molecule:actin-related protein 2/3 complex subunit 2;
PDBTitle: crystal structure of bovine arp2/3 complex
82c3rysA_



not modelled 9.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase 1;
PDBTitle: the crystal structure of adenine deaminase (aaur1117) from2 arthrobacter aurescens
83d2h8pc1



not modelled 9.1 17
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
84d2glia1



not modelled 8.9 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
85c5ow4A_



not modelled 8.8 11
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protease-resistant fragment of the trypanosoma2 cruzi gamete fusion protein hap2 ectodomain
86d1vfla1



not modelled 8.7 24
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Adenosine/AMP deaminase
87d1j26a_



not modelled 8.5 16
Fold:dsRBD-like
Superfamily:Peptidyl-tRNA hydrolase domain-like
Family:Peptidyl-tRNA hydrolase domain
88c6b8pG_



not modelled 8.3 15
PDB header:metal transport
Chain: G: PDB Molecule:potassium voltage-gated channel subfamily kqt member 4;
PDBTitle: crystal structure of the mg2+/cam:kv7.4 (kcnq4) ab domain complex
89d1t0ga_



not modelled 8.3 22
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
90d1es6a2



not modelled 8.3 43
Fold:EV matrix protein
Superfamily:EV matrix protein
Family:EV matrix protein
91d1iufa1



not modelled 8.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
92d2fhzb1



not modelled 7.2 12
Fold:Colicin D/E5 nuclease domain
Superfamily:Colicin D/E5 nuclease domain
Family:Colicin E5 nuclease domain
93c3gwrA_



not modelled 7.1 17
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
94d2ihoa2



not modelled 6.9 29
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:MOA C-terminal domain-like
95c2k2wA_



not modelled 6.9 20
PDB header:cell cycle
Chain: A: PDB Molecule:recombination and dna repair protein;
PDBTitle: second brct domain of nbs1
96c4jvhA_



not modelled 6.9 19
PDB header:rna binding protein
Chain: A: PDB Molecule:protein quaking;
PDBTitle: structure of the star domain of quaking protein in complex with rna
97d2b1xa1



not modelled 6.9 11
Fold:ISP domain
Superfamily:ISP domain
Family:Ring hydroxylating alpha subunit ISP domain
98c6b0nG_



not modelled 6.7 19
PDB header:viral protein/immune system
Chain: G: PDB Molecule:envelope glycoprotein gp140;
PDBTitle: crystal structure of the cleavage-independent prefusion hiv env2 glycoprotein trimer of the clade a bg505 isolate (nfl construct) in3 complex with fabs pgt122 and pgv19 at 3.39 a
99c3et4A_



not modelled 6.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:outer membrane protein p4, nadp phosphatase;
PDBTitle: structure of recombinant haemophilus influenzae e(p4) acid phosphatase

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Transmembrane helix prediction 

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