Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2297_(-)_2568448_2568900
DateMon Aug 5 13:25:44 BST 2019
Unique Job ID28f0802a899e5bc3
SequenceMAMEMAMMGL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.766 Y:17.297 Z:29.474
Model (left) based on template c5sv0C_
Top template information
PDB header:transport protein
Chain: C: PDB Molecule:biopolymer transport protein exbb;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 7.0
Confidence and coverage
Confidence: 70.2% Coverage: 23%
34 residues ( 23% of your sequence) have been modelled with 70.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5sv0C_



70.2 35
PDB header:transport protein
Chain: C: PDB Molecule:biopolymer transport protein exbb;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 7.0
2c4n2oD_



54.8 42
PDB header:structural protein
Chain: D: PDB Molecule:autonomous cohesin;
PDBTitle: structure of a novel autonomous cohesin protein from ruminococcus2 flavefaciens
3c1v0dA_



43.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit;
PDBTitle: crystal structure of caspase-activated dnase (cad)
4d1v0da_



43.6 28
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Caspase-activated DNase, CAD (DffB, DFF40)
5c2mltB_



18.4 31
PDB header:toxin (hemolytic polypeptide)
Chain: B: PDB Molecule:melittin;
PDBTitle: melittin
6c6o4mB_



18.4 31
PDB header:toxin
Chain: B: PDB Molecule:melittin;
PDBTitle: racemic melittin
7c6o4mA_



17.9 31
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: racemic melittin
8c2mltA_



17.6 31
PDB header:toxin (hemolytic polypeptide)
Chain: A: PDB Molecule:melittin;
PDBTitle: melittin
9c6dstA_



17.1 31
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: recombinant melittin
10c2juiA_



13.0 67
PDB header:toxin
Chain: A: PDB Molecule:plne;
PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef
11d1m1sa_



12.8 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
12c2mw6A_



12.4 31
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: structure of the bee venom toxin melittin with [(c5h5)ru]+ fragment2 attached to the tryptophan residue
13c1bh1A_



11.7 31
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: structural studies of d-pro melittin, nmr, 20 structures
14d1rowa_



11.0 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:PapD-like
Family:MSP-like
15d1cuka3



10.6 33
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA helicase RuvA subunit, N-terminal domain
16d2bnma1



10.3 44
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
17d1yqea1



8.8 30
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
18c4gr2A_



8.4 27
PDB header:chaperone
Chain: A: PDB Molecule:atrbcx1;
PDBTitle: structure of atrbcx1 from arabidopsis thaliana.
19d1s4ka_



8.2 38
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
20c4pnbC_



7.9 56
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
21c4pnbD_



not modelled 7.6 56
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
22c4pnbA_



not modelled 7.6 56
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
23d1q8da_



not modelled 7.5 55
Fold:GDNF receptor-like
Superfamily:GDNF receptor-like
Family:GDNF receptor-like
24d1txga2



not modelled 7.4 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
25c1qqp4_



not modelled 7.3 43
PDB header:virus
Chain: 4: PDB Molecule:protein (genome polyprotein);
PDBTitle: foot-and-mouth disease virus/ oligosaccharide receptor complex.
26c4pnbB_



not modelled 7.3 56
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex3;
PDBTitle: a de novo designed hexameric coiled coil cc-hex3
27c4cmrB_



not modelled 7.1 46
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase/deacetylase family protein;
PDBTitle: the crystal structure of novel exo-type maltose-forming2 amylase(py04_0872) from pyrococcus sp. st04
28d2gfqa1



not modelled 7.1 36
Fold:Phosphorylase/hydrolase-like
Superfamily:AF0625-like
Family:AF0625-like
29d1gcya1



not modelled 7.0 100
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
30c1y7xA_



not modelled 7.0 28
PDB header:structural protein, protein binding
Chain: A: PDB Molecule:major vault protein;
PDBTitle: solution structure of a two-repeat fragment of major vault2 protein
31c3trkA_



not modelled 6.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
32c6ijfA_



not modelled 6.7 22
PDB header:antitoxin
Chain: A: PDB Molecule:tai4;
PDBTitle: crystal structure of the type vi effector-immunity complex (tae4-tai4)2 from agrobacterium tumefaciens
33c1xnlA_



not modelled 6.7 43
PDB header:viral protein
Chain: A: PDB Molecule:membrane protein gp37;
PDBTitle: aslv fusion peptide
34c6e5hA_



not modelled 6.5 64
PDB header:de novo protein
Chain: A: PDB Molecule:designed peptide nc_hee_d1: aib turn mutant;
PDBTitle: heterogeneous-backbone mimics of a designed disulfide-rich protein:2 aib turn
35d2py8a1



not modelled 6.3 22
Fold:RbcX-like
Superfamily:RbcX-like
Family:RbcX-like
36c2auvA_



not modelled 6.2 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:potential nad-reducing hydrogenase subunit;
PDBTitle: solution structure of hndac : a thioredoxin-like [2fe-2s]2 ferredoxin involved in the nadp-reducing hydrogenase3 complex
37d1yuaa1



not modelled 6.1 41
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment
38c4bqdD_



not modelled 6.0 58
PDB header:blood clotting
Chain: D: PDB Molecule:peptide;
PDBTitle: kd1 of human tfpi in complex with a synthetic peptide
39c4bqdC_



not modelled 6.0 58
PDB header:blood clotting
Chain: C: PDB Molecule:peptide;
PDBTitle: kd1 of human tfpi in complex with a synthetic peptide
40c4gr6B_



not modelled 6.0 24
PDB header:chaperone
Chain: B: PDB Molecule:atrbcx2;
PDBTitle: crystal structure of atrbcx2 from arabidopsis thaliana
41c2gfqC_



not modelled 5.9 36
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:upf0204 protein ph0006;
PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii
42c2penE_



not modelled 5.9 22
PDB header:chaperone
Chain: E: PDB Molecule:orf134;
PDBTitle: crystal structure of rbcx, crystal form i
43c2py8B_



not modelled 5.5 22
PDB header:chaperone
Chain: B: PDB Molecule:hypothetical protein rbcx;
PDBTitle: rbcx
44c5kvnA_



not modelled 5.4 100
PDB header:de novo protein
Chain: A: PDB Molecule:designed peptide nc_hee_d1;
PDBTitle: nmr solution structure of designed peptide nc_hee_d1
45c6j5ib_



not modelled 5.4 33
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit alpha, mitochondrial;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
46c6igz0_



not modelled 5.3 23
PDB header:plant protein
Chain: 0: PDB Molecule:lhca-j;
PDBTitle: structure of psi-lhci
47c1d8lA_



not modelled 5.3 28
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
48c6e5iA_



not modelled 5.3 100
PDB header:de novo protein
Chain: A: PDB Molecule:designed peptide nc_hee_d1: orn turn mutant;
PDBTitle: heterogeneous-backbone mimics of a designed disulfide-rich protein:2 orn turn
49d2fg1a1



not modelled 5.1 15
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain

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