Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2302_(-)_2573823_2574065
DateMon Aug 5 13:25:44 BST 2019
Unique Job IDbd27ee881b857f29
SequenceMHAKVGDYLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.464 Y:33.735 Z:29.781
Model (left) based on template c2a7yA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359;
PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage:100%
80 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2a7yA_
100.0 100
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2302/mt2359;
PDBTitle: solution structure of the conserved hypothetical protein2 rv2302 from the bacterium mycobacterium tuberculosis
2d2a7ya1
100.0 100
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Rv2302-like
3c2ekoA_
82.2 24
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase htatip;
PDBTitle: solution structure of ruh-073, a pseudo chromo domain from2 human cdna
4d2huga1
77.6 37
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
5c6d7yA_
77.6 33
PDB header:toxin
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: 1.75 angstrom resolution crystal structure of the toxic c-terminal tip2 of cdia from pseudomonas aeruginosa in complex with immune protein
6c3qiiA_
77.5 17
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
7c5znpB_
72.4 21
PDB header:gene regulation
Chain: B: PDB Molecule:short life family protein;
PDBTitle: crystal structure of ptshl in complex with an h3k4me3 peptide
8d1fcga2
69.7 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
9d2ix0a1
68.5 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
10c1w4sA_
65.7 21
PDB header:nuclear protein
Chain: A: PDB Molecule:polybromo 1 protein;
PDBTitle: crystal structure of the proximal bah domain of polybromo
11c3qz9D_
59.6 26
PDB header:lyase
Chain: D: PDB Molecule:co-type nitrile hydratase beta subunit;
PDBTitle: crystal structure of co-type nitrile hydratase beta-y215f from2 pseudomonas putida.
12c1xniI_
56.4 26
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
13c4bb7A_
55.1 18
PDB header:transcription
Chain: A: PDB Molecule:chromatin structure-remodeling complex subunit rsc2;
PDBTitle: crystal structure of the yeast rsc2 bah domain
14d1ugpb_
49.6 18
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
15d1v6za1
48.2 31
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
16d2f5ka1
47.6 14
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
17d2fcba2
47.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
18c2ro0A_
46.4 17
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the knotted tudor domain of the yeast2 histone acetyltransferase, esa1
19d1f2qa2
46.1 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
20c2equA_
43.7 20
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
21c2qqsB_
not modelled 43.1 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:jmjc domain-containing histone demethylation
PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide
22c5in1A_
not modelled 43.1 14
PDB header:transcription
Chain: A: PDB Molecule:mrg701;
PDBTitle: crystal structure of the mrg701 chromodomain
23c4fsxB_
not modelled 41.7 26
PDB header:transferase
Chain: B: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of se-substituted zea mays zmet2 in complex with sah
24c4uc4A_
not modelled 40.5 18
PDB header:replication
Chain: A: PDB Molecule:lysine-specific demethylase 4b;
PDBTitle: crystal structure of hybrid tudor domain of human lysine demethylase2 kdm4b
25c2dxcG_
not modelled 40.1 18
PDB header:hydrolase
Chain: G: PDB Molecule:thiocyanate hydrolase subunit alpha;
PDBTitle: recombinant thiocyanate hydrolase, fully-matured form
26d1wgsa_
not modelled 38.3 18
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo barrel domain
27c2lrqA_
not modelled 37.9 9
PDB header:transcription
Chain: A: PDB Molecule:nua4 complex subunit eaf3 homolog;
PDBTitle: chemical shift assignment and solution structure of fr822a from2 drosophila melanogaster. northeast structural genomics consortium3 target fr822a
28c2ldmA_
not modelled 35.0 17
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
29c2rnzA_
not modelled 34.3 22
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase esa1;
PDBTitle: solution structure of the presumed chromodomain of the2 yeast histone acetyltransferase, esa1
30c4fm4D_
not modelled 34.0 21
PDB header:lyase
Chain: D: PDB Molecule:nitrile hydratase beta subunit;
PDBTitle: wild type fe-type nitrile hydratase from comamonas testosteroni ni1
31c4pl6A_
not modelled 33.4 16
PDB header:transcription
Chain: A: PDB Molecule:at1g02740;
PDBTitle: structure of the chromodomain of mrg2 in complex with h3k4me3
32c2e5qA_
not modelled 33.4 19
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 19;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 19, isoform b [homo sapiens]
33c3dlmA_
not modelled 33.4 15
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
34c1u9pA_
not modelled 31.7 36
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
35c3luuA_
not modelled 31.3 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein with unknown function which belongs to2 pfam duf971 family (afe_2189) from acidithiobacillus ferrooxidans3 atcc 23270 at 1.93 a resolution
36c3p8dB_
not modelled 30.4 17
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
37c2e5pA_
not modelled 29.2 23
PDB header:transcription
Chain: A: PDB Molecule:phd finger protein 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 1 (phf1 protein)
38c5n1tM_
not modelled 27.3 60
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
39c2d9uA_
not modelled 27.0 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:chromobox protein homolog 2 (isoform 2);
PDBTitle: solution structure of the chromo domain of chromobox2 homolog 2 from human
40c2lccA_
not modelled 25.6 24
PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 chromobarrel domain
41d2z1ca1
not modelled 23.5 40
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
42d2qdyb1
not modelled 23.2 23
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
43c4a4fA_
not modelled 23.2 21
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
44c2xdpA_
not modelled 23.1 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 4c;
PDBTitle: crystal structure of the tudor domain of human jmjd2c
45d2ot2a1
not modelled 21.8 30
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
46d1v29b_
not modelled 21.8 25
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Nitrile hydratase beta chain
47d1vk3a3
not modelled 21.6 29
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
48c5icuA_
not modelled 21.4 42
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
49d2c9qa1
not modelled 21.0 40
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
50c3j4uA_
not modelled 20.7 27
PDB header:virus
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: a new topology of the hk97-like fold revealed in bordetella2 bacteriophage: non-covalent chainmail secured by jellyrolls
51d1pfba_
not modelled 20.1 35
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
52c2v3mF_
not modelled 19.5 21
PDB header:ribosomal protein
Chain: F: PDB Molecule:naf1;
PDBTitle: structure of the gar1 domain of naf1
53c1q3lA_
not modelled 19.0 33
PDB header:structural protein
Chain: A: PDB Molecule:heterochromatin protein 1;
PDBTitle: chromodomain of hp1 complexed with histone h3 tail2 containing monomethyllysine 9.
54d1q3la_
not modelled 19.0 33
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
55c1g5vA_
not modelled 18.7 20
PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
56c2k1bA_
not modelled 18.4 33
PDB header:transcription regulator
Chain: A: PDB Molecule:chromobox protein homolog 7;
PDBTitle: solution nmr structure of the chromo domain of the2 chromobox protein homolog 7
57d2dnva1
not modelled 18.4 29
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
58d1guwa_
not modelled 17.9 22
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
59c3pt9A_
not modelled 17.3 22
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1;
PDBTitle: crystal structure of mouse dnmt1(731-1602) in the free state
60d3d3ra1
not modelled 16.9 27
Fold:OB-fold
Superfamily:HupF/HypC-like
Family:HupF/HypC-like
61c2l6pA_
not modelled 16.9 15
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:phac1, phac2 and phad genes;
PDBTitle: nmr solution structure of the protein np_253742.1
62c5e4wD_
not modelled 16.8 37
PDB header:transport protein
Chain: D: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic;
PDBTitle: crystal structure of cpsrp43 chromodomains 2 and 3 in complex with the2 alb3 tail
63c4bxsV_
not modelled 16.8 33
PDB header:blood clotting
Chain: V: PDB Molecule:venom prothrombin activator pseutarin-c non-catalytic
PDBTitle: crystal structure of the prothrombinase complex from the2 venom of pseudonaja textilis
64d2ix0a2
not modelled 16.7 15
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
65c3fdtA_
not modelled 16.7 20
PDB header:protein binding
Chain: A: PDB Molecule:chromobox protein homolog 5;
PDBTitle: crystal structure of the complex of human chromobox homolog 5 (cbx5)2 with h3k9(me)3 peptide
66c3d3rA_
not modelled 16.6 27
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
67d2j5wa1
not modelled 16.4 33
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
68d2j5wa4
not modelled 15.9 42
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
69c2eqjA_
not modelled 15.8 8
PDB header:transcription
Chain: A: PDB Molecule:metal-response element-binding transcription
PDBTitle: solution structure of the tudor domain of metal-response2 element-binding transcription factor 2
70c1ssfA_
not modelled 15.7 23
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
71c2l12A_
not modelled 15.7 33
PDB header:transcription regulator
Chain: A: PDB Molecule:chromobox homolog 7;
PDBTitle: solution nmr structure of the chromobox protein 7 with h3k9me3
72c1pdqA_
not modelled 15.5 39
PDB header:structural protein
Chain: A: PDB Molecule:polycomb protein;
PDBTitle: polycomb chromodomain complexed with the histone h3 tail2 containing trimethyllysine 27.
73c3mtsA_
not modelled 15.4 17
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h1;
PDBTitle: chromo domain of human histone-lysine n-methyltransferase suv39h1
74c2kvmA_
not modelled 15.4 33
PDB header:transcription
Chain: A: PDB Molecule:chromobox protein homolog 7;
PDBTitle: solution structure of the cbx7 chromodomain in complex with a h3k27me22 peptide
75d1nxza1
not modelled 15.1 25
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
76c3uaiC_
not modelled 14.8 13
PDB header:isomerase/chaperone
Chain: C: PDB Molecule:h/aca ribonucleoprotein complex subunit 1;
PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
77c2dnvA_
not modelled 14.3 29
PDB header:transcription
Chain: A: PDB Molecule:chromobox protein homolog 8;
PDBTitle: solution structure of rsgi ruh-055, a chromo domain from2 mus musculus cdna
78d2j5wa3
not modelled 14.2 42
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
79d2vv5a1
not modelled 13.6 22
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Mechanosensitive channel protein MscS (YggB), middle domain
80c2r7eB_
not modelled 13.6 33
PDB header:blood clotting
Chain: B: PDB Molecule:coagulation factor viii;
PDBTitle: crystal structure analysis of coagulation factor viii
81c2l6nA_
not modelled 13.4 18
PDB header:structure genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_001092504.1;
PDBTitle: nmr solution structure of the protein yp_001092504.1
82c2lcdA_
not modelled 13.2 33
PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of rbbp1 tudor domain
83c4haeA_
not modelled 13.2 33
PDB header:protein binding
Chain: A: PDB Molecule:chromodomain y-like protein 2;
PDBTitle: crystal structure of the cdyl2-chromodomain
84d1x3pa1
not modelled 13.0 36
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
85c4dowA_
not modelled 13.0 24
PDB header:replication
Chain: A: PDB Molecule:origin recognition complex subunit 1;
PDBTitle: structure of mouse orc1 bah domain bound to h4k20me2
86c3lweA_
not modelled 12.6 33
PDB header:cell cycle
Chain: A: PDB Molecule:m-phase phosphoprotein 8;
PDBTitle: the crystal structure of mpp8
87c3dkmA_
not modelled 11.8 11
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hectd1;
PDBTitle: crystal structure of the hectd1 cph domain
88c6bs8C_
not modelled 11.7 27
PDB header:hydrolase
Chain: C: PDB Molecule:replicative dna helicase;
PDBTitle: the class 3 dnab intein from mycobacterium smegmatis
89c2eqnA_
not modelled 11.0 32
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein loc92345;
PDBTitle: solution structure of the naf1 domain of hypothetical2 protein bc008207 [homo sapiens]
90c3fpnB_
not modelled 10.9 11
PDB header:dna binding protein
Chain: B: PDB Molecule:geobacillus stearothermophilus uvrb interaction domain;
PDBTitle: crystal structure of uvra-uvrb interaction domains
91d1d7ya3
not modelled 10.7 15
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
92c4qucA_
not modelled 10.7 30
PDB header:protein binding
Chain: A: PDB Molecule:re36324p;
PDBTitle: crystal structure of chromodomain of rhino
93d1ix2a_
not modelled 10.7 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
94c2m2lA_
not modelled 10.5 29
PDB header:nuclear protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of entamoeba histolytica hp1 chromodomain
95c3pifD_
not modelled 10.4 13
PDB header:hydrolase
Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1);
PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese
96c4y9vA_
not modelled 10.3 35
PDB header:lyase
Chain: A: PDB Molecule:particle-associated lyase;
PDBTitle: gp54 tailspike of acinetobacter baumannii bacteriophage ap22 in2 complex with a. baumannii capsular saccharide
97d1mhna_
not modelled 10.3 20
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
98c6npcB_
not modelled 10.3 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:tmpa, 2-trimethylaminoethylphosphonate hydroxylase;
PDBTitle: x-ray crystal structure of tmpa, 2-trimethylaminoethylphosphonate2 hydroxylase, with fe, 2og, and 2-trimethylaminoethylphosphonate
99c3h91B_
not modelled 10.2 33
PDB header:transcription
Chain: B: PDB Molecule:chromobox protein homolog 2;
PDBTitle: crystal structure of the complex of human chromobox homolog 2 (cbx2)2 and h3k27 peptide

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