Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2306A_(-)_2577118_2577711
DateMon Aug 5 13:25:44 BST 2019
Unique Job ID927d394f79670655
SequenceMTDNECPADS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.449 Y:26.017 Z:22.130
Model (left) based on template c5d7tC_
Top template information
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
Confidence and coverage
Confidence: 90.0% Coverage: 16%
32 residues ( 16% of your sequence) have been modelled with 90.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5d7tC_
90.0 22
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
2c4huqS_
89.9 15
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
3c4z7fD_
89.7 24
PDB header:transport protein
Chain: D: PDB Molecule:folate ecf transporter;
PDBTitle: crystal structure of folt bound with folic acid
4c2ht2B_
89.7 17
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
5d1otsa_
88.6 18
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
6c3nd0A_
82.9 16
PDB header:transport protein
Chain: A: PDB Molecule:sll0855 protein;
PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter
7c3p5nA_
75.7 15
PDB header:transport protein
Chain: A: PDB Molecule:riboflavin uptake protein;
PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter
8d1kpla_
73.6 19
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
9c4hzuS_
70.7 13
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:predicted membrane protein;
PDBTitle: structure of a bacterial energy-coupling factor transporter
10c6d0nA_
42.4 12
PDB header:transport protein
Chain: A: PDB Molecule:clc-type fluoride/proton antiporter;
PDBTitle: crystal structure of a clc-type fluoride/proton antiporter, v319g2 mutant
11c1lshB_
28.7 44
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipovitellin (lv-2);
PDBTitle: lipid-protein interactions in lipovitellin
12d1lshb_
28.7 44
Fold:Lipovitellin-phosvitin complex; beta-sheet shell regions
Superfamily:Lipovitellin-phosvitin complex; beta-sheet shell regions
Family:Lipovitellin-phosvitin complex; beta-sheet shell regions
13c4dveA_
27.5 17
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
14c6n52B_
20.9 15
PDB header:membrane protein
Chain: B: PDB Molecule:metabotropic glutamate receptor 5;
PDBTitle: metabotropic glutamate receptor 5 apo form
15c1ciiA_
17.2 21
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
16c5xpdA_
16.9 16
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
17c2zt9E_
13.3 35
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
18c4ogqE_
13.3 35
PDB header:electron transport
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
19c4h44E_
13.3 35
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
20c3ifuA_
12.8 60
PDB header:transcription
Chain: A: PDB Molecule:non-structural protein;
PDBTitle: the crystal structure of porcine reproductive and respiratory syndrome2 virus (prrsv) leader protease nsp1
21c2w8aC_
not modelled 12.6 13
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
22c1yewF_
not modelled 12.1 46
PDB header:oxidoreductase, membrane protein
Chain: F: PDB Molecule:particulate methane monooxygenase, a subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
23c4ainB_
not modelled 11.9 15
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
24c1qcrD_
not modelled 11.0 38
PDB header:oxidoreductase
Chain: D: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
25c6coyB_
not modelled 10.7 13
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, transmembrane domain
26c2kaeA_
not modelled 10.2 33
PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
27c3hfxA_
not modelled 9.6 14
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
28c1q2jA_
not modelled 9.2 50
PDB header:toxin
Chain: A: PDB Molecule:mu-conotoxin smiiia;
PDBTitle: structural basis for tetrodotoxin-resistant sodium channel2 binding by mu-conotoxin smiiia
29c4ce4F_
not modelled 8.9 31
PDB header:ribosome
Chain: F: PDB Molecule:mrpl4;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
30c4hw9E_
not modelled 8.5 11
PDB header:membrane protein
Chain: E: PDB Molecule:mechanosensitive channel mscs;
PDBTitle: crystal structure of helicobacter pylori mscs (closed state)
31c4uc2B_
not modelled 8.3 16
PDB header:membrane protein
Chain: B: PDB Molecule:translocator protein tspo;
PDBTitle: crystal structure of translocator protein 18kda (tspo) from2 rhodobacter sphaeroides (a139t mutant) in p212121 space group
32c3chxF_
not modelled 8.0 38
PDB header:membrane protein
Chain: F: PDB Molecule:pmoa;
PDBTitle: crystal structure of methylosinus trichosporium ob3b particulate2 methane monooxygenase (pmmo)
33c3rlbB_
not modelled 8.0 12
PDB header:thiamine-binding protein
Chain: B: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
34c5jp3A_
not modelled 6.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:xanthomonas outer protein d;
PDBTitle: structure of xanthomonas campestris effector protein xopd bound to2 ubiquitin
35d1mjea2
not modelled 6.2 46
Fold:BRCA2 tower domain
Superfamily:BRCA2 tower domain
Family:BRCA2 tower domain
36c1as5A_
not modelled 6.1 86
PDB header:neurotoxin
Chain: A: PDB Molecule:conotoxin y-piiie;
PDBTitle: solution structure of conotoxin y-piiie from conus2 purpurascens, nmr, 14 structures
37c5c77B_
not modelled 6.1 15
PDB header:transferase
Chain: B: PDB Molecule:protein arginine n-methyltransferase sfm1;
PDBTitle: a novel protein arginine methyltransferase
38c1jloA_
not modelled 5.7 86
PDB header:toxin
Chain: A: PDB Molecule:psi-conotoxin piiie;
PDBTitle: solution structure of the noncompetitive skeletal muscle nicotinic2 acetylcholine receptor antagonist psi-conotoxin piiie
39c1iijA_
not modelled 5.7 18
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
40c5hagA_
not modelled 5.7 45
PDB header:hydrolase
Chain: A: PDB Molecule:deubiquitinase and deneddylase dub1;
PDBTitle: structure of chlamydia trachomatis effector protein chladub1
41c2dw3A_
not modelled 5.7 60
PDB header:photosynthesis
Chain: A: PDB Molecule:intrinsic membrane protein pufx;
PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein
42c6hu9e_
not modelled 5.6 14
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
43d1q90m_
not modelled 5.5 22
Fold:Single transmembrane helix
Superfamily:PetM subunit of the cytochrome b6f complex
Family:PetM subunit of the cytochrome b6f complex
44c1q90M_
not modelled 5.5 22
PDB header:photosynthesis
Chain: M: PDB Molecule:cytochrome b6f complex subunit petm;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
45c5hamA_
not modelled 5.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:rickce;
PDBTitle: structure of rickettsia bellii effector protein rickce

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below