Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2306B_(-)_2577498_2577932
DateMon Aug 5 13:25:45 BST 2019
Unique Job ID56f078546f2aff39
SequenceLWAVVGQRFV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.862 Y:28.337 Z:61.480
Model (left) based on template c5n9yB_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
Confidence and coverage
Confidence: 75.6% Coverage: 49%
70 residues ( 49% of your sequence) have been modelled with 75.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5n9yB_
75.6 16
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
2c4ev6E_
62.8 11
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
3c2w8aC_
44.4 9
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
4c1zrtD_
41.1 4
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
5c4n7wA_
30.2 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
6c2na6A_
29.4 30
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
7c2na6C_
29.4 30
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
8c4gn0D_
28.9 11
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
9c1ciiA_
28.2 29
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
10c2na6B_
25.7 30
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
11c2bbjB_
25.5 17
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
12c3j09A_
19.8 14
PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
13c4wv4A_
18.9 20
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 10;
PDBTitle: heterodimer of taf8/taf10
14c3cwbQ_
18.8 4
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
15c5t4oJ_
18.6 16
PDB header:hydrolase
Chain: J: PDB Molecule:atp synthase subunit b;
PDBTitle: autoinhibited e. coli atp synthase state 1
16c6an7D_
17.1 13
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
17c2n28A_
16.4 24
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
18c3pcqX_
16.2 36
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
19c3j08A_
15.0 14
PDB header:hydrolase, metal transport
Chain: A: PDB Molecule:copper-exporting p-type atpase a;
PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa
20c3sokB_
14.9 20
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
21c5wsuD_
not modelled 13.9 27
PDB header:motor protein/calcium binding protein
Chain: D: PDB Molecule:unconventional myosin-viia;
PDBTitle: crystal structure of myosin viia iq5-sah in complex with apo-cam
22d1pw4a_
not modelled 13.5 7
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
23c1p84D_
not modelled 13.2 4
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
24c5kk2E_
not modelled 12.8 7
PDB header:membrane protein, transport protein, sig
Chain: E: PDB Molecule:voltage-dependent calcium channel gamma-2 subunit;
PDBTitle: architecture of fully occupied glua2 ampa receptor - tarp complex2 elucidated by single particle cryo-electron microscopy
25c4jo6Z_
not modelled 12.2 55
PDB header:unknown function
Chain: Z: PDB Molecule:sbp-tag;
PDBTitle: streptavidin complex with sbp-tag
26c1qcrD_
not modelled 11.7 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
27c1iflA_
not modelled 11.4 19
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: molecular models and structural comparisons of native and2 mutant class i filamentous bacteriophages ff (fd, f1, m13),3 if1 and ike
28c2mnsA_
not modelled 11.3 29
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p15;
PDBTitle: solution nmr structure of the reovirus p15 fusion-associated small2 transmembrane (fast) protein fusion-inducing lipid packing sensor3 (flips) motif in dodecyl phosphocholine (dpc) micelles
29c4jo6Y_
not modelled 11.0 55
PDB header:unknown function
Chain: Y: PDB Molecule:sbp-tag;
PDBTitle: streptavidin complex with sbp-tag
30c2na8A_
not modelled 10.7 23
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
31c6an7C_
not modelled 10.6 10
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
32c4inqA_
not modelled 10.4 43
PDB header:lipid binding protein
Chain: A: PDB Molecule:oxysterol-binding protein homolog 3;
PDBTitle: crystal structure of osh3 ord in complex with pi(4)p from2 saccharomyces cerevisiae
33c4b2zB_
not modelled 9.9 57
PDB header:transport protein
Chain: B: PDB Molecule:oxysterol-binding protein homolog 6;
PDBTitle: structure of osh6 in complex with phosphatidylserine
34c5wvrA_
not modelled 9.6 71
PDB header:lipid binding protein
Chain: A: PDB Molecule:klla0c04147p;
PDBTitle: crystal structure of osh1 ord domain in complex with cholesterol
35c1iijA_
not modelled 9.5 12
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
36c2micA_
not modelled 9.5 22
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
37c2micB_
not modelled 9.5 22
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
38d3cmco2
not modelled 9.5 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
39c5xamA_
not modelled 9.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
40d1dssg2
not modelled 9.3 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
41c5zm8A_
not modelled 9.1 71
PDB header:lipid transport
Chain: A: PDB Molecule:oxysterol-binding protein-related protein 2;
PDBTitle: crystal structure of orp2-ord in complex with pi(4,5)p2
42c1m57H_
not modelled 9.1 16
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
43d2r31a1
not modelled 8.8 17
Fold:ATP12-like
Superfamily:ATP12-like
Family:ATP12-like
44d2b4ro2
not modelled 8.7 18
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
45d2pkqo2
not modelled 8.7 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
46c2na9A_
not modelled 8.5 25
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
47d1obfo2
not modelled 8.5 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
48c1zi7C_
not modelled 8.4 57
PDB header:lipid binding protein
Chain: C: PDB Molecule:kes1 protein;
PDBTitle: structure of truncated yeast oxysterol binding protein osh4
49d1i32a2
not modelled 8.1 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
50d1ggaa2
not modelled 8.0 18
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
51d1rm4a2
not modelled 7.9 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
52d1zhxa1
not modelled 7.8 57
Fold:Oxysterol-binding protein-like
Superfamily:Oxysterol-binding protein-like
Family:Oxysterol-binding protein
53d1k3ta2
not modelled 7.7 21
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
54d3gpdg2
not modelled 7.6 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
55c5mdxx_
not modelled 7.6 29
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
56c5mdxX_
not modelled 7.6 29
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
57d2g82a2
not modelled 7.4 11
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
58c5bz3A_
not modelled 7.4 12
PDB header:transport protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: crystal structure of sodium proton antiporter napa in outward-facing2 conformation.
59d1gado2
not modelled 7.1 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
60c5x5yF_
not modelled 7.1 8
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
61c2inrA_
not modelled 6.3 16
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 4 subunit a;
PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus
62c3vw7A_
not modelled 6.1 10
PDB header:signaling protein/antagonist
Chain: A: PDB Molecule:proteinase-activated receptor 1, lysozyme;
PDBTitle: crystal structure of human protease-activated receptor 1 (par1) bound2 with antagonist vorapaxar at 2.2 angstrom
63d2pila_
not modelled 6.1 20
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
64c4djiA_
not modelled 6.0 11
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
65c2yiuE_
not modelled 6.0 4
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
66c4y7jE_
not modelled 5.9 15
PDB header:membrane protein,transport protein
Chain: E: PDB Molecule:large conductance mechanosensitive channel protein,
PDBTitle: structure of an archaeal mechanosensitive channel in expanded state
67d1u8fo2
not modelled 5.8 14
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
68c5mg3D_
not modelled 5.7 7
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
69c5y50A_
not modelled 5.6 9
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
70c6dx2A_
not modelled 5.5 24
PDB header:hydrolase, protein binding
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from dera ghazi2 khan virus
71c1spfA_
not modelled 5.4 36
PDB header:lipoprotein(surface film)
Chain: A: PDB Molecule:pulmonary surfactant-associated polypeptide c;
PDBTitle: the nmr structure of the pulmonary surfactant-associated2 polypeptide sp-c in an apolar solvent contains a valyl-3 rich alpha-helix
72c5ghrC_
not modelled 5.3 67
PDB header:dna binding protein/replication
Chain: C: PDB Molecule:ssdna-specific exonuclease;
PDBTitle: dna replication protein
73c6agfB_
not modelled 5.2 17
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
74c2hn8A_
not modelled 5.1 33
PDB header:viral protein
Chain: A: PDB Molecule:protein pb1-f2;
PDBTitle: structural characterization and oligomerization of pb1-f2,2 a pro-apoptotic influenza a virus protein
75c6iu3A_
not modelled 5.1 19
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
76d1oqwa_
not modelled 5.1 12
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
77c6bvvB_
not modelled 5.1 43
PDB header:transport protein
Chain: B: PDB Molecule:protein w;
PDBTitle: nipah virus w protein c-terminus in complex with importin alpha 3

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below