Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2307A_(-)_2579238_2579429
DateMon Aug 5 13:25:45 BST 2019
Unique Job IDa429d6a082bbee09
SequenceVAFVDLRYPW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:11.477 Y:11.676 Z:17.447
Model (left) based on template c6hlwB_
Top template information
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
Confidence and coverage
Confidence: 24.7% Coverage: 16%
10 residues ( 16% of your sequence) have been modelled with 24.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6hlwB_



24.7 60
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
2c6hmvB_



22.2 29
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-d68 (fusion protein, lvvy mutant)
3c6hltD_



19.4 40
PDB header:viral protein
Chain: D: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of rhinovirus-14 (hrv14)
4c5jhfA_



18.7 21
PDB header:protein transport
Chain: A: PDB Molecule:klth0d11660p;
PDBTitle: crystal structure of atg13(17br)-atg13(17lr)-atg17-atg29-atg31 complex
5d1x9ba_



18.2 24
Fold:Protozoan pheromone-like
Superfamily:Hypothetical membrane protein Ta0354, soluble domain
Family:Hypothetical membrane protein Ta0354, soluble domain
6d2fx0a2



14.2 16
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
7c5l20A_



12.5 56
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:clostripain-related protein;
PDBTitle: crystal structure of a clostripain (bt_0727) from bacteroides2 thetaiotaomicron atcc 29148 in complex with peptide inhibitor btn-3 vltk-aomk
8c3uwsA_



11.6 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a clostripain (parmer_00083) from parabacteroides2 merdae atcc 43184 at 1.70 a resolution
9c5dynA_



11.5 55
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidase;
PDBTitle: b. fragilis cysteine protease
10c3rlcA_



9.2 43
PDB header:structural protein
Chain: A: PDB Molecule:a1 protein;
PDBTitle: crystal structure of the read-through domain from bacteriophage qbeta2 a1 protein, hexagonal crystal form
11d2bmta_



8.6 71
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
12c2zoeA_



7.9 53
PDB header:toxin
Chain: A: PDB Molecule:hemagglutinin components ha3;
PDBTitle: ha3 subcomponent of clostridium botulinum type c progenitor2 toxin, complex with n-acetylneuramic acid
13d2gmga1



7.3 43
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
14c2bh1Y_



6.7 71
PDB header:transport protein
Chain: Y: PDB Molecule:general secretion pathway protein e,;
PDBTitle: x-ray structure of the general secretion pathway complex of2 the n-terminal domain of epse and the cytosolic domain of3 epsl of vibrio cholerae
15d2bh1x1



6.7 71
Fold:Alpha-lytic protease prodomain-like
Superfamily:EspE N-terminal domain-like
Family:GSPII protein E N-terminal domain-like
16c2l02B_



6.6 50
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
17c3rmsA_



6.3 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein svir_20580 from2 saccharomonospora viridis
18c2l01A_



6.2 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153
19c5ubkA_



6.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq;
PDBTitle: inactive s1a/n269d-cppvdq mutant in complex with the pyoverdine2 precursor pvdiq reveals a specific binding pocket for the d-tyr of3 this substrate
20d1lira_



5.9 71
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
21c2d7dB_



not modelled 5.8 67
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
22c3am2A_



not modelled 5.8 54
PDB header:toxin
Chain: A: PDB Molecule:heat-labile enterotoxin b chain;
PDBTitle: clostridium perfringens enterotoxin
23c2m9lA_



not modelled 5.7 50
PDB header:toxin
Chain: A: PDB Molecule:beta-theraphotoxin-tp1a;
PDBTitle: solution structure of protoxin-1
24d1ei5a2



not modelled 5.7 60
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
25c1q2iA_



not modelled 5.6 63
PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
26d2f1da1



not modelled 5.5 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
27c6gcsc_



not modelled 5.3 40
PDB header:oxidoreductase
Chain: C: PDB Molecule:49-kda protein (nucm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica

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