Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2311_(-)_2583894_2584418
DateMon Aug 5 13:25:46 BST 2019
Unique Job IDeca80f05d794dc42
SequenceVAPTGQAVDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.178 Y:29.149 Z:57.324
Model (left) based on template c5ld2D_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:recbcd enzyme subunit recd;
PDBTitle: cryo-em structure of recbcd+dna complex revealing activated nuclease2 domain
Confidence and coverage
Confidence: 99.9% Coverage: 63%
110 residues ( 63% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ld2D_



99.9 24
PDB header:hydrolase
Chain: D: PDB Molecule:recbcd enzyme subunit recd;
PDBTitle: cryo-em structure of recbcd+dna complex revealing activated nuclease2 domain
2c3e1sA_



99.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd;
PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2
3c5n8oA_



99.8 21
PDB header:transferase
Chain: A: PDB Molecule:dna helicase i;
PDBTitle: cryo em structure of the conjugative relaxase trai of the f/r1 plasmid2 system
4c3gp8A_



99.8 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd, putative;
PDBTitle: crystal structure of the binary complex of recd2 with dna
5c5ftbA_



99.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:tpr domain protein;
PDBTitle: crystal structure of pif1 helicase from bacteroides in2 complex with amppnp
6c5fhhA_



99.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pif1;
PDBTitle: structure of human pif1 helicase domain residues 200-641
7c1w36G_



99.6 29
PDB header:recombination
Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain;
PDBTitle: recbcd:dna complex
8d1w36d2



99.5 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
9c4l0jA_



99.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase i;
PDBTitle: structure of a translocation signal domain mediating conjugative2 transfer by type iv secretion systems
10c5o6dB_



99.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent dna helicase pif1;
PDBTitle: structure of scpif1 in complex with polydt and atpgs
11c3upuC_



99.1 21
PDB header:hydrolase/dna
Chain: C: PDB Molecule:atp-dependent dna helicase dda;
PDBTitle: crystal structure of the t4 phage sf1b helicase dda
12c4n0oC_



98.9 26
PDB header:hydrolase/dna
Chain: C: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: complex structure of arterivirus nonstructural protein 10 (helicase)2 with dna
13c5wwpA_



98.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
14c5wwpB_



98.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
15c3dmnA_



98.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dna helicase;
PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1
16c1pjrA_



98.4 19
PDB header:helicase
Chain: A: PDB Molecule:pcra;
PDBTitle: structure of dna helicase
17c4c30I_



98.3 21
PDB header:hydrolase/dna
Chain: I: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of deinococcus radiodurans uvrd in2 complex with dna, form 2
18d1w36b2



98.3 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
19c1uaaB_



98.3 34
PDB header:hydrolase/dna
Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.);
PDBTitle: e. coli rep helicase/dna complex
20c1qhhD_



98.3 18
PDB header:hydrolase
Chain: D: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
21c4b3gA_



not modelled 98.3 21
PDB header:hydrolase/rna
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: crystal structure of ighmbp2 helicase in complex with rna
22c3lfuA_



not modelled 98.3 24
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of e. coli uvrd
23c2is6B_



not modelled 98.3 28
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
24c2pjrB_



not modelled 98.2 18
PDB header:hydrolase/dna
Chain: B: PDB Molecule:protein (helicase pcra);
PDBTitle: helicase product complex
25d1pjra2



not modelled 98.0 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
26c2gk7A_



not modelled 98.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: structural and functional insights into the human upf1 helicase core
27c3vkwA_



not modelled 98.0 26
PDB header:transferase
Chain: A: PDB Molecule:replicase large subunit;
PDBTitle: crystal structure of the superfamily 1 helicase from tomato mosaic2 virus
28d1uaaa2



not modelled 97.9 35
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
29c5eaxB_



not modelled 97.6 24
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna replication atp-dependent helicase/nuclease dna2;
PDBTitle: crystal structure of dna2 in complex with an ssdna
30c2wjyA_



not modelled 97.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
31c1w36E_



not modelled 97.4 27
PDB header:recombination
Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain;
PDBTitle: recbcd:dna complex
32c2xzlA_



not modelled 97.3 21
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
33c5mznA_



not modelled 97.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:helicase sen1,helicase sen1;
PDBTitle: helicase sen1
34c4pj3A_



not modelled 96.9 24
PDB header:rna binding protein
Chain: A: PDB Molecule:intron-binding protein aquarius;
PDBTitle: structural insight into the function and evolution of the spliceosomal2 helicase aquarius, structure of aquarius in complex with amppnp
35c6jimA_



not modelled 96.3 23
PDB header:viral protein/rna
Chain: A: PDB Molecule:helicase;
PDBTitle: viral helicase protein
36c3u4qA_



not modelled 96.3 32
PDB header:hydrolase/dna
Chain: A: PDB Molecule:atp-dependent helicase/nuclease subunit a;
PDBTitle: structure of addab-dna complex at 2.8 angstroms
37c3jb9X_



not modelled 96.1 19
PDB header:rna binding protein/rna
Chain: X: PDB Molecule:pre-mrna-splicing factor cwf11;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
38c3u44B_



not modelled 95.0 18
PDB header:hydrolase/dna
Chain: B: PDB Molecule:atp-dependent helicase/deoxyribonuclease subunit b;
PDBTitle: crystal structure of addab-dna complex
39d1w36c2



not modelled 80.9 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
40c1w36F_



not modelled 52.4 16
PDB header:recombination
Chain: F: PDB Molecule:exodeoxyribonuclease v gamma chain;
PDBTitle: recbcd:dna complex
41c2e6zA_



not modelled 34.0 13
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5
42c4ytlB_



not modelled 31.7 15
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow2-kow3 domain of transcription elongation factor2 spt5.
43d1nz9a_



not modelled 26.1 13
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
44c2mi6A_



not modelled 24.6 19
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusg;
PDBTitle: solution structure of the carboxy terminal domain of nusg from2 mycobacterium tuberculosis
45c3p8bB_



not modelled 21.6 15
PDB header:transferase/transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5
46c2kvqG_



not modelled 20.8 24
PDB header:transcription
Chain: G: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of nuse:nusg-ctd complex
47c2jvvA_



not modelled 20.8 24
PDB header:transcription
Chain: A: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: solution structure of e. coli nusg carboxyterminal domain
48d1mhna_



not modelled 19.1 16
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
49d1nppa2



not modelled 18.1 15
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:N-utilization substance G protein NusG, C-terminal domain
50c3b79A_



not modelled 16.3 18
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:toxin secretion atp-binding protein;
PDBTitle: crystal structure of the n-terminal peptidase c39 like2 domain of the toxin secretion atp-binding protein from3 vibrio parahaemolyticus
51d2d9ta1



not modelled 16.1 13
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
52c1g5vA_



not modelled 15.4 17
PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
53c4a4fA_



not modelled 15.2 19
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
54c3pnwX_



not modelled 14.7 13
PDB header:protein binding/immune system
Chain: X: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab
55c2d9tA_



not modelled 10.8 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse
56c2lo9A_



not modelled 8.5 62
PDB header:toxin
Chain: A: PDB Molecule:mu-conotoxin buiiib;
PDBTitle: nmr solution structure of mu-contoxin buiiib
57c1m1gB_



not modelled 8.4 15
PDB header:transcription
Chain: B: PDB Molecule:transcription antitermination protein nusg;
PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1)
58c2n5uA_



not modelled 7.4 14
PDB header:photosynthesis
Chain: A: PDB Molecule:tsr0524 protein;
PDBTitle: solution structure of the cyanobacterial cytochrome b6f complex2 subunit petp
59c3cgnA_



not modelled 7.2 25
PDB header:isomerase
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase;
PDBTitle: crystal structure of thermophilic slyd
60c5y4oA_



not modelled 7.1 15
PDB header:membrane protein
Chain: A: PDB Molecule:low conductance mechanosensitive channel ynai;
PDBTitle: cryo-em structure of mscs channel, ynai
61d1ib8a1



not modelled 7.1 3
Fold:Sm-like fold
Superfamily:YhbC-like, C-terminal domain
Family:YhbC-like, C-terminal domain
62c4ui9D_



not modelled 7.1 13
PDB header:cell cycle
Chain: D: PDB Molecule:anaphase-promoting complex subunit 15;
PDBTitle: atomic structure of the human anaphase-promoting complex
63c4ytkA_



not modelled 7.0 8
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow1-linker1 domain of transcription elongation2 factor spt5
64c2axcA_



not modelled 6.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:colicin e7;
PDBTitle: crystal structure of cole7 translocation domain
65c3t9nG_



not modelled 5.7 20
PDB header:membrane protein
Chain: G: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: crystal structure of a membrane protein
66c3zuaA_



not modelled 5.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-hemolysin translocation atp-binding protein hlyb;
PDBTitle: a c39-like domain
67c3d3rA_



not modelled 5.6 29
PDB header:chaperone
Chain: A: PDB Molecule:hydrogenase assembly chaperone hypc/hupf;
PDBTitle: crystal structure of the hydrogenase assembly chaperone hypc/hupf2 family protein from shewanella oneidensis mr-1
68c4tseA_



not modelled 5.6 13
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mib repeat domain of mind bomb 1
69c3prdA_



not modelled 5.3 6
PDB header:chaperone, isomerase
Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase;
PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26
70d1pn0a3



not modelled 5.3 10
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:PHBH-like

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