Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2312_(-)_2584496_2584765
DateMon Aug 5 13:25:46 BST 2019
Unique Job IDfb393218d48bfae9
SequenceMMKEIELHLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.333 Y:14.597 Z:22.997
Model (left) based on template d1pcfa_
Top template information
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Transcriptional coactivator PC4 C-terminal domain
Confidence and coverage
Confidence: 31.5% Coverage: 18%
16 residues ( 18% of your sequence) have been modelled with 31.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1pcfa_
31.5 19
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Transcriptional coactivator PC4 C-terminal domain
2c1xdtT_
27.7 31
PDB header:complex (toxin/growth factor)
Chain: T: PDB Molecule:diphtheria toxin;
PDBTitle: complex of diphtheria toxin and heparin-binding epidermal growth2 factor
3c4aghA_
27.5 56
PDB header:transcription
Chain: A: PDB Molecule:mosub1, transcription cofactor;
PDBTitle: structural features of ssdna binding protein mosub1 from magnaporthe2 oryzae
4c5a4nB_
24.3 19
PDB header:dna binding protein
Chain: B: PDB Molecule:bpsl1147;
PDBTitle: crystal structure of bpsl1147, a pc4 homolog from burkholderia2 pseudomallei k96243 (tetragonal crystal form)
5d1ej5a_
23.7 28
Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
6c1ceeB_
21.6 23
PDB header:structural protein regulation
Chain: B: PDB Molecule:wiskott-aldrich syndrome protein wasp;
PDBTitle: solution structure of cdc42 in complex with the gtpase2 binding domain of wasp
7c3trkA_
21.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
8c3i9yA_
20.2 22
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of the v. parahaemolyticus histidine kinase sensor2 tors sensor domain
9c3i9wA_
19.7 22
PDB header:transferase
Chain: A: PDB Molecule:sensor protein tors;
PDBTitle: crystal structure of the e. coli histidine kinase sensor tors sensor2 domain
10c5wk1L_
19.3 36
PDB header:virus
Chain: L: PDB Molecule:capsid stabilizing protein;
PDBTitle: structure of the major capsid protein and the capsid stabilizing2 protein of the marine siphovirus tw1
11d1yuaa2
19.1 50
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Prokaryotic DNA topoisomerase I, a C-terminal fragment
12c6eikE_
18.0 40
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
13d2it9a1
16.9 19
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:PMN2A0962/syc2379c-like
14c6b4fD_
16.8 40
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm complex
15c6b4jC_
16.6 40
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm-ddx19b(amppnp) complex
16c6eikF_
16.5 40
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
17c6eikB_
16.5 40
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
18c6eikA_
16.5 40
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
19c6eikD_
16.5 40
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
20c6eikC_
16.5 40
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
21c6eikG_
not modelled 16.5 40
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-i24e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i24e
22c2k42A_
not modelled 15.7 23
PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protein;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
23d2nvna1
not modelled 15.4 25
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:PMN2A0962/syc2379c-like
24c4e18B_
not modelled 15.3 28
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
25c2lnhA_
not modelled 13.7 23
PDB header:signaling protein/protein binding
Chain: A: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
26c5ez9C_
not modelled 13.6 59
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
27c5ez9D_
not modelled 13.6 59
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
28c5ez9A_
not modelled 13.6 59
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
29c5ez9E_
not modelled 13.6 59
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
30c5ez9G_
not modelled 13.6 59
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
31c5ez9B_
not modelled 13.1 59
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
32c5ez9F_
not modelled 13.1 59
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-l22h;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i-h-i
33c3obhA_
not modelled 12.4 41
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104
34c5ezeD_
not modelled 11.7 63
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
35c5f2yD_
not modelled 11.5 63
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
36c5ezeB_
not modelled 11.5 63
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
37c3bolB_
not modelled 11.0 23
PDB header:transferase
Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine
PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+
38c5ezcA_
not modelled 10.9 63
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
39c5ezcE_
not modelled 10.9 63
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
40c5ezcD_
not modelled 10.9 63
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
41c5ezcC_
not modelled 10.9 63
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
42c5f2yC_
not modelled 10.9 63
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
43c5f2yF_
not modelled 10.9 63
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
44c5f2yB_
not modelled 10.9 63
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
45c2i7aA_
not modelled 10.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:calpain 13;
PDBTitle: domain iv of human calpain 13
46d1gzsb_
not modelled 10.5 18
Fold:SopE-like GEF domain
Superfamily:SopE-like GEF domain
Family:SopE-like GEF domain
47c5ezcB_
not modelled 10.5 63
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
48c5ezcF_
not modelled 10.5 63
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
49c5ezcG_
not modelled 10.5 63
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-c-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h-i25e
50c5ezaB_
not modelled 10.5 63
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
51c5ezaD_
not modelled 10.5 63
PDB header:de novo protein
Chain: D: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
52c5ezaC_
not modelled 10.5 63
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
53c5ezaG_
not modelled 10.5 63
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
54c5ezaE_
not modelled 10.5 63
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
55c5ezaA_
not modelled 10.5 63
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
56c5ezaF_
not modelled 10.5 63
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-c-h-i;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18c-l22h
57c5ezeC_
not modelled 10.4 63
PDB header:de novo protein
Chain: C: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
58c5ezeE_
not modelled 10.4 63
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
59c5f2yE_
not modelled 10.4 63
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
60c5f2yA_
not modelled 10.1 63
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
61c5ezeA_
not modelled 10.1 63
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
62c5f2yG_
not modelled 10.1 63
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-hcys-h-e;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-homocys-h-e
63c5ezeF_
not modelled 10.1 63
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
64c6b4iD_
not modelled 10.0 40
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm-ddx19b(adp) complex
65c5ezeG_
not modelled 9.9 63
PDB header:de novo protein
Chain: G: PDB Molecule:cc-hept-bmecys-his-glu;
PDBTitle: a de novo designed heptameric coiled coil cc-hept-i18betamecys-l22h-2 i25e
66c6b4jD_
not modelled 9.9 40
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm-ddx19b(amppnp) complex
67c3pm7A_
not modelled 9.4 39
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184
68c2azqA_
not modelled 9.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:catechol 1,2-dioxygenase;
PDBTitle: crystal structure of catechol 1,2-dioxygenase from pseudomonas arvilla2 c-1
69d2qi2a2
not modelled 9.4 17
Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:ERF1/Dom34 middle domain-like
70c1yuaA_
not modelled 8.4 50
PDB header:dna binding protein
Chain: A: PDB Molecule:topoisomerase i;
PDBTitle: c-terminal domain of escherichia coli topoisomerase i
71c2m4hA_
not modelled 8.1 30
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
72c2ltdA_
not modelled 8.1 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ydbc;
PDBTitle: solution nmr structure of apo ydbc from lactococcus lactis, northeast2 structural genomics consortium (nesg) target kr150
73c1tmxA_
not modelled 8.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyquinol 1,2-dioxygenase;
PDBTitle: crystal structure of hydroxyquinol 1,2-dioxygenase from nocardioides2 simplex 3e
74c6gtsC_
not modelled 7.8 13
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
75d1dmha_
not modelled 7.7 20
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
76c2cooA_
not modelled 7.5 23
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase
77c2ma2A_
not modelled 7.5 14
PDB header:calcium-binding protein
Chain: A: PDB Molecule:ras guanyl-releasing protein 2;
PDBTitle: solution structure of rasgrp2 ef hands bound to calcium
78c1mgtA_
not modelled 7.2 8
PDB header:transferase
Chain: A: PDB Molecule:protein (o6-methylguanine-dna methyltransferase);
PDBTitle: crystal structure of o6-methylguanine-dna methyltransferase from2 hyperthermophilic archaeon pyrococcus kodakaraensis strain kod1
79d1w4ha1
not modelled 7.0 7
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
80c3iynO_
not modelled 6.7 63
PDB header:virus
Chain: O: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
81c2l95A_
not modelled 6.5 26
PDB header:hydrolase
Chain: A: PDB Molecule:crammer;
PDBTitle: solution structure of cytotoxic t-lymphocyte antigent-2(ctla protein),2 crammer at ph 6.0
82c4qoyE_
not modelled 6.4 21
PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase (dihydrolipoyltransacetylase
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
83c2eq9C_
not modelled 6.3 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
84c4guaB_
not modelled 6.2 24
PDB header:hydrolase
Chain: B: PDB Molecule:non-structural polyprotein;
PDBTitle: alphavirus p23pro-zbd
85c2l3aA_
not modelled 6.2 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of homodimer protein sp_0782 (7-79) from2 streptococcus pneumoniae northeast structural genomics consortium3 target spr104 .
86c2a5wC_
not modelled 6.1 30
PDB header:oxidoreductase
Chain: C: PDB Molecule:sulfite reductase, desulfoviridin-type subunit gamma
PDBTitle: crystal structure of the oxidized gamma-subunit of the dissimilatory2 sulfite reductase (dsrc) from archaeoglobus fulgidus
87c5z4gA_
not modelled 6.1 47
PDB header:unknown function
Chain: A: PDB Molecule:sahs4;
PDBTitle: crystal structure of secretory abundant heat soluble protein 4 from2 ramazzottius varieornatus
88c6mrrA_
not modelled 5.9 57
PDB header:de novo protein
Chain: A: PDB Molecule:foldit1;
PDBTitle: de novo designed protein foldit1
89d1uoua1
not modelled 5.9 24
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
90c3f75P_
not modelled 5.8 18
PDB header:hydrolase
Chain: P: PDB Molecule:cathepsin l propeptide;
PDBTitle: activated toxoplasma gondii cathepsin l (tgcpl) in complex with its2 propeptide
91c2eq7C_
not modelled 5.7 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
92c2hwkA_
not modelled 5.5 44
PDB header:hydrolase
Chain: A: PDB Molecule:helicase nsp2;
PDBTitle: crystal structure of venezuelan equine encephalitis alphavirus nsp22 protease domain
93c3zifR_
not modelled 5.5 50
PDB header:virus
Chain: R: PDB Molecule:pviii;
PDBTitle: cryo-em structures of two intermediates provide insight into2 adenovirus assembly and disassembly
94c2kkrA_
not modelled 5.4 36
PDB header:transcription, protein binding
Chain: A: PDB Molecule:ataxin-7;
PDBTitle: solution structure of sca7 zinc finger domain from human ataxin-72 protein
95d2cyua1
not modelled 5.3 9
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
96d1ctda_
not modelled 5.3 34
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
97c6eyyB_
not modelled 5.2 50
PDB header:viral protein
Chain: B: PDB Molecule:acriia6;
PDBTitle: anti-crispr acriia6 cubic form
98c1yx3A_
not modelled 5.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein dsrc;
PDBTitle: nmr structure of allochromatium vinosum dsrc: northeast2 structural genomics consortium target op4
99c1smzA_
not modelled 5.1 53
PDB header:transport protein
Chain: A: PDB Molecule:transportan in bicellar solution with
PDBTitle: structure of transportan in phospholipid bicellar solution

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