Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2313c_(-)_2585062_2585916
DateMon Aug 5 13:25:46 BST 2019
Unique Job ID22dd3582ff691707
SequenceVPAPVSVRDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.049 Y:37.933 Z:44.675
Model (left) based on template d2gmya1
Top template information
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
Confidence and coverage
Confidence:100.0% Coverage: 47%
134 residues ( 47% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gmya1



100.0 22
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
2c6ohiA_



100.0 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
3d2o4da1



100.0 26
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
4c3c1lB_



100.0 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
5d2pfxa1



100.0 16
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
6d2oyoa1



100.0 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
7d2prra1



100.0 14
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
8c3lvyB_



100.0 14
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
9d2ouwa1



99.1 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
10d1knca_



99.1 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
11d1vkea_



99.1 23
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
12c1p8cD_



99.0 22
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
13c3beyC_



98.9 23
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
14c5dipB_



98.9 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
15d1vkeb_



98.8 23
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
16c5dj4D_



98.6 11
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
17c2qeuA_



98.6 11
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
18c3d7iB_



98.5 16
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
19d2cwqa1



98.3 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
20d2q0ta1



97.8 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
21c4g9qA_



not modelled 96.9 18
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
22d2af7a1



not modelled 96.9 22
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
23c5gzxD_



not modelled 91.9 20
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
24d1a9xa1



not modelled 89.0 17
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
25c5dotA_



not modelled 63.9 12
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 apo form
26c5douC_



not modelled 57.1 12
PDB header:ligase
Chain: C: PDB Molecule:carbamoyl-phosphate synthase [ammonia], mitochondrial;
PDBTitle: crystal structure of human carbamoyl phosphate synthetase i (cps1),2 ligand-bound form
27c5nwuA_



not modelled 44.6 30
PDB header:viral protein
Chain: A: PDB Molecule:wtfp-tag,gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the fusion2 peptide of hiv-1 gp41 in the presence of hexafluoroisopropanol
28c1m6vE_



not modelled 33.6 17
PDB header:ligase
Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain;
PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
29c1erfA_



not modelled 28.7 55
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein;
PDBTitle: conformational mapping of the n-terminal fusion peptide of2 hiv-1 gp41 using 13c-enhanced fourier transform infrared3 spectroscopy (ftir)
30c2knjA_



not modelled 27.0 13
PDB header:antimicrobial protein
Chain: A: PDB Molecule:microplusin preprotein;
PDBTitle: nmr structure of microplusin a antimicrobial peptide from2 rhipicephalus (boophilus) microplus
31c2pjvA_



not modelled 26.7 55
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: solution structure of hiv-1 gp41 fusion domain bound to dpc micelle
32c3kdvB_



not modelled 22.3 36
PDB header:dna binding protein
Chain: B: PDB Molecule:dna damage response b protein;
PDBTitle: crystal structure of dna damage response b (ddrb) from deinococcus2 geothermalis
33c2hm2Q_



not modelled 20.8 20
PDB header:apoptosis
Chain: Q: PDB Molecule:pyrin-only protein 1;
PDBTitle: solution structure of asc2
34d1fc2c_



not modelled 20.7 29
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
35d1deeg_



not modelled 20.2 24
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
36d1lp1b_



not modelled 20.1 29
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
37d2jwda1



not modelled 18.8 29
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
38d1ucpa_



not modelled 17.0 20
Fold:DEATH domain
Superfamily:DEATH domain
Family:Pyrin domain, PYD
39c2do9A_



not modelled 17.0 28
PDB header:signaling protein
Chain: A: PDB Molecule:nacht-, lrr- and pyd-containing protein 10;
PDBTitle: solution structure of the pyrin/paad-dapin domain in mouse2 nalp10 (nacht, leucine rich repeat and pyd containing 10)
40c2km6A_



not modelled 16.6 19
PDB header:signaling protein, protein binding
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 7;
PDBTitle: nmr structure of the nlrp7 pyrin domain
41c3ermD_



not modelled 16.0 4
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein with unknown function2 from pseudomonas syringae pv. tomato str. dc3000
42d1pn5a1



not modelled 15.3 16
Fold:DEATH domain
Superfamily:DEATH domain
Family:Pyrin domain, PYD
43c1pn5A_



not modelled 15.3 16
PDB header:apoptosis
Chain: A: PDB Molecule:nacht-, lrr- and pyd-containing protein 2;
PDBTitle: nmr structure of the nalp1 pyrin domain (pyd)
44c2a7uA_



not modelled 14.5 38
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase alpha chain;
PDBTitle: nmr solution structure of the e.coli f-atpase delta subunit n-terminal2 domain in complex with alpha subunit n-terminal 22 residues
45c3deeA_



not modelled 14.4 9
PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of a putative regulatory protein involved in2 transcription (ngo1945) from neisseria gonorrhoeae fa 1090 at 2.25 a3 resolution
46c2ariA_



not modelled 12.5 55
PDB header:viral protein
Chain: A: PDB Molecule:envelope polyprotein gp160;
PDBTitle: solution structure of micelle-bound fusion domain of hiv-12 gp41
47c4ewiA_



not modelled 12.2 16
PDB header:signaling protein, protein binding
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 4;
PDBTitle: crystal structure of the nlrp4 pyrin domain
48c2qjxA_



not modelled 11.6 9
PDB header:protein binding
Chain: A: PDB Molecule:protein bim1;
PDBTitle: structural basis of microtubule plus end tracking by xmap215, clip-1702 and eb1
49c1a6bB_



not modelled 11.6 33
PDB header:viral protein/dna
Chain: B: PDB Molecule:zinc finger protein ncp10;
PDBTitle: nmr structure of the complex between the zinc finger2 protein ncp10 of moloney murine leukemia virus and a3 sequence of the psi-packaging domain of hiv-1, 204 structures
50c6ncvE_



not modelled 11.5 16
PDB header:signaling protein, protein fibril
Chain: E: PDB Molecule:nacht, lrr and pyd domains-containing protein 6;
PDBTitle: cryo-em structure of nlrp6 pyd filament
51c1hcwA_



not modelled 11.2 40
PDB header:growth response protein
Chain: A: PDB Molecule:bba1;
PDBTitle: 23-residue designed metal-free peptide based on the zinc2 finger domains, nmr, 35 structures
52c4pwoA_



not modelled 10.7 22
PDB header:structural genomics
Chain: A: PDB Molecule:dsba;
PDBTitle: crystal structure of dsba from the gram positive bacterium2 corynebacterium diphtheriae
53c1p5aA_



not modelled 10.5 55
PDB header:viral protein
Chain: A: PDB Molecule:envelope polyprotein gp160;
PDBTitle: conformational mapping of the n-terminal peptide of hiv-12 gp41 in lipid detergent and aqueous environments using 13c-3 enhanced fourier transform infrared spectroscopy
54d2qjza1



not modelled 10.4 9
Fold:CH domain-like
Superfamily:Calponin-homology domain, CH-domain
Family:Calponin-homology domain, CH-domain
55c4fybA_



not modelled 9.9 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein (dsbc);
PDBTitle: structural and functional characterizations of a thioredoxin-fold2 protein from helicobacter pylori
56d1u6pa_



not modelled 9.7 33
Fold:Retrovirus zinc finger-like domains
Superfamily:Retrovirus zinc finger-like domains
Family:Retrovirus zinc finger-like domains
57c2l6aA_



not modelled 9.6 24
PDB header:signaling protein
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 12;
PDBTitle: three-dimensional structure of the n-terminal effector pyrin domain of2 nlrp12
58d1dt0a1



not modelled 9.1 30
Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
59c1t3bA_



not modelled 8.9 33
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: x-ray structure of dsbc from haemophilus influenzae
60c5il0B_



not modelled 8.8 31
PDB header:rna binding protein
Chain: B: PDB Molecule:mettl14;
PDBTitle: crystal structural of the mettl3-mettl14 complex for n6-adenosine2 methylation
61c4wwrD_



not modelled 8.7 18
PDB header:transport protein
Chain: D: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
62c2m5vA_



not modelled 8.7 28
PDB header:immune system
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 10;
PDBTitle: three-dimensional structure of human nlrp10/pynod pyrin domain
63d1khia2



not modelled 8.5 10
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
64d1y67a1



not modelled 8.3 35
Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
65c1wyoA_



not modelled 8.3 9
PDB header:structural protein
Chain: A: PDB Molecule:microtubule-associated protein rp/eb family
PDBTitle: solution structure of the ch domain of human microtubule-2 associated protein rp/eb family member 3
66c3w20B_



not modelled 8.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a novel n-substituted l-amino acid dioxygenase2 from burkholderia ambifaria ammd
67c4odaC_



not modelled 8.1 19
PDB header:hydrolase/replication
Chain: C: PDB Molecule:dna polymerase processivity factor component a20;
PDBTitle: crystal structure of the vaccinia virus dna polymerase holoenzyme2 subunit d4 in complex with the a20 n-terminus
68c2ob9A_



not modelled 8.0 40
PDB header:chaperone
Chain: A: PDB Molecule:tail assembly chaperone;
PDBTitle: structure of bacteriophage hk97 tail assembly chaperone
69c2kn6A_



not modelled 7.6 20
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card;
PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card)
70c4fc8B_



not modelled 7.5 10
PDB header:transcription
Chain: B: PDB Molecule:transcription protein rtr1;
PDBTitle: crystal structure of transcription regulator protein rtr1 from2 kluyveromyces lactis
71c5ctdA_



not modelled 7.3 32
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
72c1s5lu_



not modelled 7.2 22
PDB header:photosynthesis
Chain: U: PDB Molecule:photosystem ii 12 kda extrinsic protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
73c5lutK_



not modelled 7.1 47
PDB header:transferase
Chain: K: PDB Molecule:blm helicase;
PDBTitle: structures of dhbn domain of gallus gallus blm helicase
74c5givD_



not modelled 7.0 15
PDB header:hydrolase
Chain: D: PDB Molecule:carboxypeptidase 1;
PDBTitle: crystal structure of m32 carboxypeptidase from deinococcus radiodurans2 r1
75c4wwrB_



not modelled 6.9 17
PDB header:transport protein
Chain: B: PDB Molecule:ubiquitin-like protein 4a;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
76c3hq2A_



not modelled 6.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:bacillus subtilis m32 carboxypeptidase;
PDBTitle: bsucp crystal structure
77c5oarC_



not modelled 6.8 23
PDB header:hydrolase
Chain: C: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of native beta-n-acetylhexosaminidase isolated from2 aspergillus oryzae
78c4npbA_



not modelled 6.7 33
PDB header:isomerase
Chain: A: PDB Molecule:protein disulfide isomerase ii;
PDBTitle: the crystal structure of thiol:disulfide interchange protein dsbc from2 yersinia pestis co92
79c3pt8B_



not modelled 6.7 16
PDB header:oxygen transport
Chain: B: PDB Molecule:hemoglobin iii;
PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0
80d1vz0a2



not modelled 6.7 30
Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:ParB-like nuclease domain
81c1v57A_



not modelled 6.7 38
PDB header:isomerase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbg;
PDBTitle: crystal structure of the disulfide bond isomerase dsbg
82c6os5A_



not modelled 6.6 15
PDB header:transferase
Chain: A: PDB Molecule:cymd prenyltransferase;
PDBTitle: crystal structure of cymd prenyltransferase complexed with l-2 tryptophan
83c3gv1A_



not modelled 6.6 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:disulfide interchange protein;
PDBTitle: crystal structure of disulfide interchange protein from neisseria2 gonorrhoeae
84c2jnrB_



not modelled 6.4 55
PDB header:viral protein
Chain: B: PDB Molecule:env polyprotein;
PDBTitle: discovery and optimization of a natural hiv-1 entry2 inhibitor targeting the gp41 fusion peptide
85d1mc0a1



not modelled 6.3 11
Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
86c1hyuA_



not modelled 6.3 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
87d2nyba1



not modelled 6.2 30
Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
88c4kmgA_



not modelled 6.2 15
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c6 (soluble cytochrome f) (cytochrome c553);
PDBTitle: crystal structure of cytochrome c6b from synechococcus sp. wh8102
89c4aezB_



not modelled 6.1 33
PDB header:cell cycle
Chain: B: PDB Molecule:mitotic spindle checkpoint component mad2;
PDBTitle: crystal structure of mitotic checkpoint complex
90c2j2sA_



not modelled 6.0 25
PDB header:transcription regulation
Chain: A: PDB Molecule:zinc finger protein hrx;
PDBTitle: solution structure of the nonmethyl-cpg-binding cxxc domain of the2 leukaemia-associated mll histone methyltransferase
91c2jyiA_



not modelled 5.9 25
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein hrx;
PDBTitle: solution structure of mll cxxc domain
92d1eeja1



not modelled 5.8 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
93c3dvwA_



not modelled 5.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsba;
PDBTitle: crystal structure of reduced dsba1 from neisseria2 meningitidis
94c5tdyD_



not modelled 5.7 19
PDB header:motor protein
Chain: D: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: structure of cofolded flifc:flign complex from thermotoga maritima
95c3ol4B_



not modelled 5.7 19
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
96c2ki8A_



not modelled 5.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase,
PDBTitle: solution nmr structure of tungsten formylmethanofuran2 dehydrogenase subunit d from archaeoglobus fulgidus,3 northeast structural genomics consortium target att7
97c3iraA_



not modelled 5.7 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
98d1wpga4



not modelled 5.7 19
Fold:Calcium ATPase, transmembrane domain M
Superfamily:Calcium ATPase, transmembrane domain M
Family:Calcium ATPase, transmembrane domain M
99c1jzdA_



not modelled 5.6 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbc;
PDBTitle: dsbc-dsbdalpha complex

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