Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2314c_(-)_2585927_2587300
DateMon Aug 5 13:25:46 BST 2019
Unique Job IDf8417e72c944c30c
SequenceMIEPQHAVNI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.483 Y:70.042 Z:63.117
Model (left) based on template d1vpba_
Top template information
Fold:Putative modulator of DNA gyrase, PmbA/TldD
Superfamily:Putative modulator of DNA gyrase, PmbA/TldD
Family:Putative modulator of DNA gyrase, PmbA/TldD
Confidence and coverage
Confidence:100.0% Coverage: 92%
419 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vpba_



100.0 15
Fold:Putative modulator of DNA gyrase, PmbA/TldD
Superfamily:Putative modulator of DNA gyrase, PmbA/TldD
Family:Putative modulator of DNA gyrase, PmbA/TldD
2c5njaC_



100.0 14
PDB header:hydrolase
Chain: C: PDB Molecule:metalloprotease tldd;
PDBTitle: e. coli microcin-processing metalloprotease tldd/e with angiotensin2 analogue bound
3d1vl4a_



100.0 15
Fold:Putative modulator of DNA gyrase, PmbA/TldD
Superfamily:Putative modulator of DNA gyrase, PmbA/TldD
Family:Putative modulator of DNA gyrase, PmbA/TldD
4c3qtdC_



100.0 16
PDB header:gene regulation
Chain: C: PDB Molecule:pmba protein;
PDBTitle: crystal structure of putative modulator of gyrase (pmba) from2 pseudomonas aeruginosa pao1
5d1o12a1



49.5 38
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
6d1m1ha1



35.7 37
Fold:N-utilization substance G protein NusG, insert domain
Superfamily:N-utilization substance G protein NusG, insert domain
Family:N-utilization substance G protein NusG, insert domain
7d1xcca_



32.1 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
8c2i81B_



30.0 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-cys peroxiredoxin;
PDBTitle: crystal structure of plasmodium vivax 2-cys peroxiredoxin,2 reduced
9c3tkpB_



29.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxiredoxin-4;
PDBTitle: crystal structure of full-length human peroxiredoxin 4 in the reduced2 form
10c4qlpB_



27.4 16
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:alanine and proline rich protein, tuberculosis necrotizing
PDBTitle: atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift
11d2h01a1



23.4 26
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
12c2v2gC_



22.2 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxiredoxin 6;
PDBTitle: crystal structure of the c45s mutant of the peroxiredoxin 62 of arenicola marina. monoclinic form
13c5ykjA_



21.1 11
PDB header:transferase
Chain: A: PDB Molecule:peroxiredoxin prx1, mitochondrial;
PDBTitle: structural basis of the thiol resolving mechanism in yeast2 mitochondrial 1-cys peroxiredoxin via glutathione/thioredoxin systems
14c2vjwA_



20.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:gaf family protein;
PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis
15c5ineA_



19.9 28
PDB header:viral protein
Chain: A: PDB Molecule:pre-glycoprotein polyprotein gp complex;
PDBTitle: crystal structure of the prefusion glycoprotein of lcmv
16c6feuJ_



19.1 15
PDB header:oxidoreductase
Chain: J: PDB Molecule:peroxiredoxin;
PDBTitle: prxq2, a 1-cys peroxiredoxin of the thermo-acidophilic archaeon2 sulfolobus islandicus
17c3gzkA_



18.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structure of a. acidocaldarius cellulase cela
18d1pd0a4



15.9 38
Fold:Gelsolin-like
Superfamily:C-terminal, gelsolin-like domain of Sec23/24
Family:C-terminal, gelsolin-like domain of Sec23/24
19c5vk2a_



15.2 32
PDB header:viral protein/immune system
Chain: A: PDB Molecule:pre-glycoprotein polyprotein gp complex;
PDBTitle: structural basis for antibody-mediated neutralization of lassa virus
20c4nk8A_



14.9 16
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase;
PDBTitle: crystal structure of the periplasmic alginate epimerase algg d317a2 mutant
21d1uula_



not modelled 14.1 13
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
22d1n8ja_



not modelled 13.9 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
23c5jcgC_



not modelled 13.6 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:thioredoxin-dependent peroxide reductase, mitochondrial;
PDBTitle: structure of human peroxiredoxin 3 as three stacked rings
24c2oodA_



not modelled 12.3 38
PDB header:hydrolase
Chain: A: PDB Molecule:blr3880 protein;
PDBTitle: crystal structure of guanine deaminase from bradyrhizobium japonicum
25c5enuB_



not modelled 12.0 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase/ thiol specific antioxidant/
PDBTitle: crystal structure of an alkyl hyroperoxide reductase from burkholderia2 ambifaria
26c3ixrA_



not modelled 11.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant
27c4b1vM_



not modelled 10.4 29
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-n domain bound to g-actin
28c4b1vN_



not modelled 10.4 29
PDB header:structural protein
Chain: N: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-n domain bound to g-actin
29c2ov2O_



not modelled 10.3 29
PDB header:protein binding/transferase
Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)
30c1bknA_



not modelled 10.2 16
PDB header:dna repair
Chain: A: PDB Molecule:mutl;
PDBTitle: crystal structure of an n-terminal 40kd fragment of e. coli2 dna mismatch repair protein mutl
31d3dm8a1



not modelled 10.1 4
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rpa4348-like
32c4b1uM_



not modelled 10.0 29
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel domain and rpel motif directed2 assemblies with g-actin reveal the molecular basis for actin binding3 cooperativity.
33c5d5oE_



not modelled 9.9 23
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein mj0489;
PDBTitle: hcgc from methanocaldococcus jannaschii
34d2fy6a1



not modelled 9.6 26
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
35c3w6gP_



not modelled 9.3 20
PDB header:oxidoreductase
Chain: P: PDB Molecule:probable peroxiredoxin;
PDBTitle: structure of peroxiredoxin from anaerobic hyperthermophilic archaeon2 pyrococcus horikoshii
36d1tbxa_



not modelled 9.2 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:F93-like
37d1prxa_



not modelled 8.8 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
38c3gknA_



not modelled 8.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures
39d1pb1a_



not modelled 8.5 15
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
40c2iv0A_



not modelled 8.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:isocitrate dehydrogenase;
PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers
41d1t3ba1



not modelled 8.1 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
42c4kb3B_



not modelled 8.1 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxidoxin;
PDBTitle: crystal structure of the mitochondrial peroxiredoxin from leishmania2 braziliensis in the decameric form
43c2odbB_



not modelled 7.9 27
PDB header:protein binding
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6;
PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)
44c5zteA_



not modelled 7.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-cys peroxiredoxin bas1, chloroplastic;
PDBTitle: crystal structure of prxa c119s mutant from arabidopsis thaliana
45c3blxM_



not modelled 7.6 15
PDB header:oxidoreductase
Chain: M: PDB Molecule:isocitrate dehydrogenase [nad] subunit 1;
PDBTitle: yeast isocitrate dehydrogenase (apo form)
46c5jheA_



not modelled 7.5 27
PDB header:chaperone
Chain: A: PDB Molecule:peptidyl-prolyl cis-trans isomerase cyp7;
PDBTitle: the crystal structure of the saccharomyces cerevisiae co-chaperone2 cpr7
47d1w0da_



not modelled 7.5 23
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
48d1hqsa_



not modelled 7.4 8
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
49d1bkna2



not modelled 7.4 16
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
50c2w0cL_



not modelled 7.2 11
PDB header:virus
Chain: L: PDB Molecule:protein 2;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
51c1x0lB_



not modelled 7.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:homoisocitrate dehydrogenase;
PDBTitle: crystal structure of tetrameric homoisocitrate dehydrogenase from an2 extreme thermophile, thermus thermophilus
52c1tyoA_



not modelled 6.9 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:isocitrate dehydrogenase;
PDBTitle: isocitrate dehydrogenase from the hyperthermophile aeropyrum pernix in2 complex with etheno-nadp
53d1a05a_



not modelled 6.8 8
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
54c3vl3A_



not modelled 6.4 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-isopropylmalate dehydrogenase;
PDBTitle: 3-isopropylmalate dehydrogenase from shewanella oneidensis mr-1 at 3402 mpa
55c1htrP_



not modelled 6.4 7
PDB header:aspartyl protease
Chain: P: PDB Molecule:progastricsin (pro segment);
PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution
56c3r8wC_



not modelled 6.3 15
PDB header:oxidoreductase
Chain: C: PDB Molecule:3-isopropylmalate dehydrogenase 2, chloroplastic;
PDBTitle: structure of 3-isopropylmalate dehydrogenase isoform 2 from2 arabidopsis thaliana at 2.2 angstrom resolution
57c2kilA_



not modelled 6.2 8
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr structure of the h103g mutant so2144 h-nox domain from2 shewanella oneidensis in the fe(ii)co ligation state
58d1xcra1



not modelled 6.1 20
Fold:AF0104/ALDC/Ptd012-like
Superfamily:AF0104/ALDC/Ptd012-like
Family:PTD012-like
59d1vp7b_



not modelled 6.1 21
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
60d1vp7a_



not modelled 6.1 21
Fold:Spectrin repeat-like
Superfamily:XseB-like
Family:XseB-like
61c3upsA_



not modelled 6.1 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
62c3sbcG_



not modelled 6.1 15
PDB header:oxidoreductase
Chain: G: PDB Molecule:peroxiredoxin tsa1;
PDBTitle: crystal structure of saccharomyces cerevisiae tsa1c47s mutant protein
63c2qygC_



not modelled 6.0 20
PDB header:unknown function
Chain: C: PDB Molecule:ribulose bisphosphate carboxylase-like protein 2;
PDBTitle: crystal structure of a rubisco-like protein rlp2 from rhodopseudomonas2 palustris
64c1o12B_



not modelled 5.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:n-acetylglucosamine-6-phosphate deacetylase;
PDBTitle: crystal structure of n-acetylglucosamine-6-phosphate deacetylase2 (tm0814) from thermotoga maritima at 2.5 a resolution
65d1cm7a_



not modelled 5.8 7
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
66d1wpwa_



not modelled 5.6 15
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
67c1e0aB_



not modelled 5.6 33
PDB header:signalling protein/kinase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
68d1g2ua_



not modelled 5.5 15
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
69c5ovqL_



not modelled 5.5 16
PDB header:oxidoreductase
Chain: L: PDB Molecule:peroxiredoxin;
PDBTitle: crystal structure of the peroxiredoxin (ahpc2) from the2 hyperthermophilic bacteria aquifex aeolicus vf
70c2rjzA_



not modelled 5.5 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pilo protein;
PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa
71c3ztlB_



not modelled 5.5 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin peroxidase;
PDBTitle: crystal structure of decameric form of peroxiredoxin i from2 schistosoma mansoni
72c2bmxB_



not modelled 5.5 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxidase c;
PDBTitle: mycobacterium tuberculosis ahpc
73d1xaca_



not modelled 5.4 15
Fold:Isocitrate/Isopropylmalate dehydrogenase-like
Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like
Family:Dimeric isocitrate & isopropylmalate dehydrogenases
74d1vr4a1



not modelled 5.4 20
Fold:Dodecin subunit-like
Superfamily:YbjQ-like
Family:YbjQ-like
75c5mnwA_



not modelled 5.3 21
PDB header:lyase
Chain: A: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: solution structure of the cinaciguat bound human beta1 h-nox.
76c1y2iC_



not modelled 5.3 26
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein s0862;
PDBTitle: crystal structure of mcsg target apc27401 from shigella flexneri
77d1y2ia_



not modelled 5.3 26
Fold:Dodecin subunit-like
Superfamily:YbjQ-like
Family:YbjQ-like
78c2hqlB_



not modelled 5.3 9
PDB header:dna binding protein
Chain: B: PDB Molecule:hypothetical protein mg376 homolog;
PDBTitle: crystal structure of a small single-stranded dna binding2 protein from mycoplasma pneumoniae
79d1qmva_



not modelled 5.2 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
80d1m7ja1



not modelled 5.2 17
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:D-aminoacylase
81c4k59A_



not modelled 5.2 23
PDB header:rna binding protein
Chain: A: PDB Molecule:rna binding protein rsmf;
PDBTitle: crystal structure of pseudomonas aeruginosa rsmf
82d2j85a1



not modelled 5.2 9
Fold:STIV B116-like
Superfamily:STIV B116-like
Family:STIV B116-like
83d1eeja1



not modelled 5.1 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbC/DsbG C-terminal domain-like
84d2zcta1



not modelled 5.1 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like

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