Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2315c_(-)_2587297_2588814
DateMon Aug 5 13:25:46 BST 2019
Unique Job ID8e8f8e370dde6cda
SequenceVTPNRGIDED ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.908 Y:62.033 Z:69.560
Model (left) based on template c5njaC_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:metalloprotease tldd;
PDBTitle: e. coli microcin-processing metalloprotease tldd/e with angiotensin2 analogue bound
Confidence and coverage
Confidence:100.0% Coverage: 92%
465 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5njaC_



100.0 21
PDB header:hydrolase
Chain: C: PDB Molecule:metalloprotease tldd;
PDBTitle: e. coli microcin-processing metalloprotease tldd/e with angiotensin2 analogue bound
2d1vpba_



100.0 17
Fold:Putative modulator of DNA gyrase, PmbA/TldD
Superfamily:Putative modulator of DNA gyrase, PmbA/TldD
Family:Putative modulator of DNA gyrase, PmbA/TldD
3c3qtdC_



100.0 17
PDB header:gene regulation
Chain: C: PDB Molecule:pmba protein;
PDBTitle: crystal structure of putative modulator of gyrase (pmba) from2 pseudomonas aeruginosa pao1
4d1vl4a_



100.0 16
Fold:Putative modulator of DNA gyrase, PmbA/TldD
Superfamily:Putative modulator of DNA gyrase, PmbA/TldD
Family:Putative modulator of DNA gyrase, PmbA/TldD
5c4b6cB_



47.8 23
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b,dna gyrase subunit b,dna gyrase
PDBTitle: structure of the m. smegmatis gyrb atpase domain in complex with an2 aminopyrazinamide
6c4lhdB_



39.1 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine dehydrogenase [decarboxylating];
PDBTitle: crystal structure of synechocystis sp. pcc 6803 glycine decarboxylase2 (p-protein), holo form with pyridoxal-5'-phosphate and glycine,3 closed flexible loop
7d1s14a_



34.2 22
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
8c1w7vD_



31.5 20
PDB header:hydrolase
Chain: D: PDB Molecule:xaa-pro aminopeptidase;
PDBTitle: znmg substituted aminopeptidase p from e. coli
9c1bknA_



29.5 28
PDB header:dna repair
Chain: A: PDB Molecule:mutl;
PDBTitle: crystal structure of an n-terminal 40kd fragment of e. coli2 dna mismatch repair protein mutl
10d1ydua1



27.6 10
Fold:At5g01610-like
Superfamily:At5g01610-like
Family:At5g01610-like
11c3onrI_



27.4 14
PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
12c3g7bB_



25.5 16
PDB header:isomerase/isomerase inhibitor
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: staphylococcus aureus gyrase b co-complex with methyl ({5-[4-(4-2 hydroxypiperidin-1-yl)-2-phenyl-1,3-thiazol-5-yl]-1h-pyrazol-3-3 yl}methyl)carbamate inhibitor
13c4k59A_



25.3 26
PDB header:rna binding protein
Chain: A: PDB Molecule:rna binding protein rsmf;
PDBTitle: crystal structure of pseudomonas aeruginosa rsmf
14c3zm7E_



23.6 16
PDB header:isomerase
Chain: E: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of the atpase region of mycobacterium2 tuberculosis gyrb with amppcp
15c3qkbB_



21.8 6
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution
16c3dx5A_



21.6 10
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein asbf;
PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis
17d1o12a1



21.0 19
Fold:Composite domain of metallo-dependent hydrolases
Superfamily:Composite domain of metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
18d2pjua1



20.6 11
Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
19c5k39A_



20.2 13
PDB header:structural protein
Chain: A: PDB Molecule:cellulosome anchoring protein cohesin region;
PDBTitle: the type ii cohesin dockerin complex from clostridium thermocellum
20c4emvA_



17.0 16
PDB header:isomerase/isomerase inhibitor
Chain: A: PDB Molecule:dna topoisomerase iv, b subunit;
PDBTitle: crystal structure of a topoisomerase atp inhibitor
21c1s16B_



not modelled 16.5 20
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase iv subunit b;
PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp
22c5zfsA_



not modelled 15.8 13
PDB header:isomerase
Chain: A: PDB Molecule:d-allulose-3-epimerase;
PDBTitle: crystal structure of arthrobacter globiformis m30 sugar epimerase2 which can produce d-allulose from d-fructose
23c3gknA_



not modelled 14.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: insights into the alkyl peroxide reduction activity of xanthomonas2 campestris bacterioferritin comigratory protein from the trapped3 intermediate/ligand complex structures
24c5j9bB_



not modelled 14.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxiredoxin asp f3;
PDBTitle: crystal structure of peroxiredoxin asp f3
25c2pjuD_



not modelled 12.8 11
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
26c4qlpB_



not modelled 12.7 18
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:alanine and proline rich protein, tuberculosis necrotizing
PDBTitle: atomic structure of tuberculosis necrotizing toxin (tnt) complexed2 with its immunity factor ift
27d1m1ha1



not modelled 12.2 28
Fold:N-utilization substance G protein NusG, insert domain
Superfamily:N-utilization substance G protein NusG, insert domain
Family:N-utilization substance G protein NusG, insert domain
28d1s16a2



not modelled 11.8 19
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
29c5enuB_



not modelled 11.5 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase/ thiol specific antioxidant/
PDBTitle: crystal structure of an alkyl hyroperoxide reductase from burkholderia2 ambifaria
30c1bo4A_



not modelled 10.8 15
PDB header:transferase
Chain: A: PDB Molecule:protein (serratia marcescens aminoglycoside-3-n-
PDBTitle: crystal structure of a gcn5-related n-acetyltransferase: serratia2 marescens aminoglycoside 3-n-acetyltransferase
31d1bo4a_



not modelled 10.8 15
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:N-acetyl transferase, NAT
32c3ixrA_



not modelled 10.6 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein;
PDBTitle: crystal structure of xylella fastidiosa prxq c47s mutant
33d1vr4a1



not modelled 10.4 25
Fold:Dodecin subunit-like
Superfamily:YbjQ-like
Family:YbjQ-like
34c1y2iC_



not modelled 10.1 22
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein s0862;
PDBTitle: crystal structure of mcsg target apc27401 from shigella flexneri
35d1y2ia_



not modelled 10.1 22
Fold:Dodecin subunit-like
Superfamily:YbjQ-like
Family:YbjQ-like
36c6a5hB_



not modelled 10.1 8
PDB header:biosynthetic protein
Chain: B: PDB Molecule:101015d;
PDBTitle: the structure of [4+2] and [6+4] cyclase in the biosynthetic pathway2 of unidentified natural product
37c3t9yA_



not modelled 10.1 10
PDB header:transferase
Chain: A: PDB Molecule:acetyltransferase, gnat family;
PDBTitle: crystal structure of gnat family acetyltransferase staphylococcus2 aureus subsp. aureus usa300_tch1516
38c3ff0A_



not modelled 9.1 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2;
PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution
39c6humO_



not modelled 9.1 18
PDB header:proton transport
Chain: O: PDB Molecule:nad(p)h-quinone oxidoreductase subunit o;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
40d1kfia4



not modelled 9.0 13
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
41c5mwwA_



not modelled 8.8 15
PDB header:transferase
Chain: A: PDB Molecule:rna polymerase sigma factor siga;
PDBTitle: sigma1.1 domain of sigmaa from bacillus subtilis
42c5j5pB_



not modelled 8.8 16
PDB header:isomerase/dna
Chain: B: PDB Molecule:dna topoisomerase 4 subunit b;
PDBTitle: amp-pnp-stabilized atpase domain of topoisomerase iv from2 streptococcus pneumoniae, complex type i
43c2iv0A_



not modelled 8.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:isocitrate dehydrogenase;
PDBTitle: thermal stability of isocitrate dehydrogenase from2 archaeoglobus fulgidus studied by crystal structure3 analysis and engineering of chimers
44c3w6gP_



not modelled 8.5 16
PDB header:oxidoreductase
Chain: P: PDB Molecule:probable peroxiredoxin;
PDBTitle: structure of peroxiredoxin from anaerobic hyperthermophilic archaeon2 pyrococcus horikoshii
45c3qphA_



not modelled 8.3 11
PDB header:transcription
Chain: A: PDB Molecule:trmb, a global transcription regulator;
PDBTitle: the three-dimensional structure of trmb, a global transcriptional2 regulator of the hyperthermophilic archaeon pyrococcus furiosus in3 complex with sucrose
46c2lrcA_



not modelled 8.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable thioredoxin;
PDBTitle: structure of thioredoxin 2 from pseudomonas aeruginosa pao1 in its2 reduced form
47c4geeA_



not modelled 8.1 9
PDB header:isomerase/isomerase inhibitor
Chain: A: PDB Molecule:dna gyrase subunit b;
PDBTitle: pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv,2 part i: structure guided discovery and optimization of dual targeting3 agents with potent, broad-spectrum enzymatic activity.
48c3hz4A_



not modelled 8.0 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from methanosarcina mazei
49c2r7tA_



not modelled 7.9 10
PDB header:transferase/rna
Chain: A: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of rotavirus sa11 vp1/rna (ugugaacc) complex
50c5u35A_



not modelled 7.7 10
PDB header:de novo protein
Chain: A: PDB Molecule:de novo ntf2 with large cavity;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
51c2mraA_



not modelled 7.4 16
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or459;
PDBTitle: solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or459
52c3fuyC_



not modelled 7.4 19
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative integron gene cassette protein;
PDBTitle: structure from the mobile metagenome of cole harbour salt marsh:2 integron cassette protein hfx_cass1
53c5e09A_



not modelled 7.3 24
PDB header:hydrolase
Chain: A: PDB Molecule:cellulase;
PDBTitle: structural insight of a trimodular halophilic cellulase with a family2 46 carbohydrate-binding module
54c1pyaD_



not modelled 7.2 24
PDB header:carboxy-lyase
Chain: D: PDB Molecule:pyruvoyl-dependent histidine decarboxylase (l-histidine
PDBTitle: refined structure of the pyruvoyl-dependent histidine decarboxylase2 from lactobacillus 30a
55c3oqtP_



not modelled 7.0 22
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
56c4hymA_



not modelled 6.6 13
PDB header:isomerase/isomerase inhibitor
Chain: A: PDB Molecule:topoisomerase iv, subunit b;
PDBTitle: pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv,2 part i: structure guided discovery and optimization of dual targeting3 agents with potent, broad-spectrum enzymatic activity.
57c6feuJ_



not modelled 6.6 10
PDB header:oxidoreductase
Chain: J: PDB Molecule:peroxiredoxin;
PDBTitle: prxq2, a 1-cys peroxiredoxin of the thermo-acidophilic archaeon2 sulfolobus islandicus
58c3jvnA_



not modelled 6.2 14
PDB header:transferase
Chain: A: PDB Molecule:acetyltransferase;
PDBTitle: crystal structure of the acetyltransferase vf_1542 from vibrio2 fischeri, northeast structural genomics consortium target vfr136
59c5it5B_



not modelled 6.2 20
PDB header:transport protein
Chain: B: PDB Molecule:atp binding motif-containing protein pilf;
PDBTitle: thermus thermophilus pilb core atpase region
60c6mspA_



not modelled 6.2 17
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein foldit3;
PDBTitle: de novo designed protein foldit3
61c3lggA_



not modelled 6.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase cecr1;
PDBTitle: crystal structure of human adenosine deaminase growth factor,2 adenosine deaminase type 2 (ada2) complexed with transition state3 analogue, coformycin
62c5ovqL_



not modelled 6.1 13
PDB header:oxidoreductase
Chain: L: PDB Molecule:peroxiredoxin;
PDBTitle: crystal structure of the peroxiredoxin (ahpc2) from the2 hyperthermophilic bacteria aquifex aeolicus vf
63c3f8hA_



not modelled 6.0 19
PDB header:unknown function
Chain: A: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (tm1040_3560) from2 silicibacter sp. tm1040 at 2.00 a resolution
64d2fy6a1



not modelled 5.9 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
65d1m8ta_



not modelled 5.8 21
Fold:Phospholipase A2, PLA2
Superfamily:Phospholipase A2, PLA2
Family:Vertebrate phospholipase A2
66c1kijB_



not modelled 5.7 16
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of the 43k atpase domain of thermus thermophilus2 gyrase b in complex with novobiocin
67d1gk8a2



not modelled 5.7 13
Fold:Ferredoxin-like
Superfamily:RuBisCO, large subunit, small (N-terminal) domain
Family:Ribulose 1,5-bisphosphate carboxylase-oxygenase
68d1tuha_



not modelled 5.7 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Hypothetical protein egc068 from a soil-derived mobile gene cassette
69c1tuhA_



not modelled 5.7 10
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein egc068;
PDBTitle: structure of bal32a from a soil-derived mobile gene cassette
70d1kija2



not modelled 5.6 14
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
71c5ykjA_



not modelled 5.6 10
PDB header:transferase
Chain: A: PDB Molecule:peroxiredoxin prx1, mitochondrial;
PDBTitle: structural basis of the thiol resolving mechanism in yeast2 mitochondrial 1-cys peroxiredoxin via glutathione/thioredoxin systems
72c3f7xA_



not modelled 5.6 17
PDB header:unknown function
Chain: A: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (pp0894) from2 pseudomonas putida kt2440 at 1.24 a resolution
73d1dl6a_



not modelled 5.6 17
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
74c6r1eC_



not modelled 5.6 19
PDB header:flavoprotein
Chain: C: PDB Molecule:dodecin;
PDBTitle: structure of dodecin from streptomyces coelicolor
75c5x9yC_



not modelled 5.4 17
PDB header:dna binding protein
Chain: C: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the atpase domain from bacterial mismatch repair2 endonuclease aquifex aeolicus mutl.
76c4zquB_



not modelled 5.4 8
PDB header:toxin
Chain: B: PDB Molecule:cdii toxin;
PDBTitle: cdia-ct/cdii toxin and immunity complex from yersinia2 pseudotuberculosis
77d1luza_



not modelled 5.4 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
78c5csaA_



not modelled 5.4 10
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase;
PDBTitle: crystal structure of domains bt-bccp-ac1-ac5 of yeast acetyl-coa2 carboxylase
79d1ei1a2



not modelled 5.4 15
Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
Family:DNA gyrase/MutL, N-terminal domain
80c4kb3B_



not modelled 5.4 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxidoxin;
PDBTitle: crystal structure of the mitochondrial peroxiredoxin from leishmania2 braziliensis in the decameric form
81d1u7ba2



not modelled 5.4 3
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
82c2w3gA_



not modelled 5.3 15
PDB header:transferase
Chain: A: PDB Molecule:two component sensor histidine kinase devs (gaf
PDBTitle: air-oxidized structure of the first gaf domain of2 mycobacterium tuberculosis doss
83c5tshF_



not modelled 5.3 23
PDB header:atp-binding protein
Chain: F: PDB Molecule:type iv pilus biogenesis atpase pilb;
PDBTitle: pilb from geobacter metallireducens bound to amp-pnp
84c4eo3A_



not modelled 5.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:bacterioferritin comigratory protein/nadh dehydrogenase;
PDBTitle: peroxiredoxin nitroreductase fusion enzyme
85c3zxqA_



not modelled 5.3 17
PDB header:transferase
Chain: A: PDB Molecule:hypoxia sensor histidine kinase response regulator dost;
PDBTitle: crystal structure of the atp-binding domain of mycobacterium2 tuberculosis dost
86d3ckma1



not modelled 5.3 12
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
87c5wzmA_



not modelled 5.1 12
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:group iie secretory phospholipase a2;
PDBTitle: crystal structure of human secreted phospholipase a2 group iie
88d1p7oa_



not modelled 5.1 26
Fold:Phospholipase A2, PLA2
Superfamily:Phospholipase A2, PLA2
Family:Vertebrate phospholipase A2
89c2i81B_



not modelled 5.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-cys peroxiredoxin;
PDBTitle: crystal structure of plasmodium vivax 2-cys peroxiredoxin,2 reduced

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