Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2316_(uspA)_2588848_2589720
DateMon Aug 5 13:25:46 BST 2019
Unique Job ID82ef472e8d9734cd
SequenceMRDAPRRRTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.834 Y:69.117 Z:60.569
Model (left) based on template c3fh6F_
Top template information
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
Confidence and coverage
Confidence:100.0% Coverage: 97%
280 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fh6F_



100.0 26
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
2c4tqvI_



100.0 21
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
3c2r6gF_



100.0 30
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
4d2r6gg1



100.0 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
5c4tqvJ_



100.0 17
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
6d2r6gf2



100.0 30
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7d2onkc1



100.0 20
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
8c2onkC_



100.0 20
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
9d3d31c1



100.0 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c3d31D_



100.0 17
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
11c4ymuC_



100.0 15
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.9 16
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13d2r6gf1



94.7 22
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
14c5kbuA_



79.2 11
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
15c2hx6A_



39.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
16c2m8gX_



20.4 23
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
17c4l5eA_



20.2 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
18d1umqa_



18.5 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
19c1umqA_



18.5 6
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
20d1fipa_



16.2 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
21d1ntca_



not modelled 14.5 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
22d1etob_



not modelled 14.4 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
23d1etxa_



not modelled 13.0 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
24c3e7lD_



not modelled 11.3 19
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
25c1g2hA_



not modelled 10.9 10
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
26d1g2ha_



not modelled 10.9 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
27c6gcs6_



not modelled 9.4 10
PDB header:oxidoreductase
Chain: 6: PDB Molecule:nd6 subunit (nu6m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
28c1ojlD_



not modelled 9.3 23
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
29c3wg7T_



not modelled 7.8 15
PDB header:oxidoreductase
Chain: T: PDB Molecule:cytochrome c oxidase subunit 6a2, mitochondrial;
PDBTitle: a 1.9 angstrom radiation damage free x-ray structure of large (420kda)2 protein by femtosecond crystallography
30c5m7nA_



not modelled 7.6 13
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
31d1v54g_



not modelled 6.9 15
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIa
Family:Mitochondrial cytochrome c oxidase subunit VIa
32d1brwa3



not modelled 6.6 25
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below