Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2317_(uspB)_2589707_2590531
DateMon Aug 5 13:25:46 BST 2019
Unique Job IDfc0dba08204a4d38
SequenceMSSPSRVSNT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.257 Y:74.598 Z:65.461
Model (left) based on template d2r6gg1
Top template information
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
Confidence and coverage
Confidence:100.0% Coverage: 98%
269 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gg1



100.0 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
2c4tqvJ_



100.0 25
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
3c3fh6F_



100.0 18
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
4c4tqvI_



100.0 12
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
5c2r6gF_



100.0 20
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
6c2onkC_



100.0 19
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
7d2onkc1



100.0 19
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
8c3d31D_



100.0 16
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
9d3d31c1



100.0 16
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10d2r6gf2



100.0 20
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
11c4ymuC_



99.9 13
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.8 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



79.7 6
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14d2r6gf1



77.8 16
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
15c2m8gX_



50.5 16
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
16c4l5eA_



46.1 6
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
17d1umqa_



42.0 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
18c1umqA_



42.0 6
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
19d1fipa_



39.3 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
20c3e7lD_



37.9 19
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
21d1ntca_



not modelled 37.3 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
22d1etob_



not modelled 36.1 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
23d1etxa_



not modelled 33.1 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
24c2hx6A_



not modelled 28.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
25c1g2hA_



not modelled 27.4 10
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
26d1g2ha_



not modelled 27.4 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
27c5m7nA_



not modelled 22.3 10
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
28c1ojlD_



not modelled 17.3 13
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
29c1bctA_



not modelled 8.0 11
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of proteolytic fragment 163-2312 of bacterioopsin determined from nuclear magnetic3 resonance data in solution
30c2cw1A_



not modelled 8.0 27
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
31d1cf7a_



not modelled 7.9 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Cell cycle transcription factor e2f-dp
32c4j2nA_



not modelled 7.5 20
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
33c4j2nB_



not modelled 7.5 20
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
34c4cvoA_



not modelled 7.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6;
PDBTitle: crystal structure of the n-terminal colied-coil domain of human dna2 excision repair protein ercc-6
35c4v1ad_



not modelled 7.2 33
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
36c3wg7T_



not modelled 7.1 15
PDB header:oxidoreductase
Chain: T: PDB Molecule:cytochrome c oxidase subunit 6a2, mitochondrial;
PDBTitle: a 1.9 angstrom radiation damage free x-ray structure of large (420kda)2 protein by femtosecond crystallography
37c1pyuD_



not modelled 6.9 31
PDB header:lyase
Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain;
PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
38d1v54g_



not modelled 6.8 15
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIa
Family:Mitochondrial cytochrome c oxidase subunit VIa
39d2ns0a1



not modelled 6.0 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
40c4qiwT_



not modelled 5.9 36
PDB header:transcription
Chain: T: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
41d1brwa3



not modelled 5.9 35
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
42d2diia1



not modelled 5.9 17
Fold:BSD domain-like
Superfamily:BSD domain-like
Family:BSD domain
43d2tpta3



not modelled 5.8 18
Fold:alpha/beta-Hammerhead
Superfamily:Pyrimidine nucleoside phosphorylase C-terminal domain
Family:Pyrimidine nucleoside phosphorylase C-terminal domain
44c1vc3B_



not modelled 5.8 31
PDB header:lyase
Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain;
PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase
45c1uheA_



not modelled 5.6 38
PDB header:lyase
Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain;
PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex
46d2jdih2



not modelled 5.5 37
Fold:Epsilon subunit of F1F0-ATP synthase N-terminal domain
Superfamily:Epsilon subunit of F1F0-ATP synthase N-terminal domain
Family:Epsilon subunit of F1F0-ATP synthase N-terminal domain
47c2diiA_



not modelled 5.5 17
PDB header:transcription
Chain: A: PDB Molecule:tfiih basal transcription factor complex p62
PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit
48c1vw42_



not modelled 5.5 25
PDB header:ribosome
Chain: 2: PDB Molecule:54s ribosomal protein l28, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
49c2w6jH_



not modelled 5.4 35
PDB header:hydrolase
Chain: H: PDB Molecule:f1-atpase delta subunit;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase during2 controlled dehydration: hydration state 5.
50c2i5gB_



not modelled 5.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:amidohydrolase;
PDBTitle: crystal strcuture of amidohydrolase from pseudomonas aeruginosa
51c3plxB_



not modelled 5.3 23
PDB header:lyase
Chain: B: PDB Molecule:aspartate 1-decarboxylase;
PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168
52c1twcF_



not modelled 5.3 29
PDB header:transcription
Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23
PDBTitle: rna polymerase ii complexed with gtp
53d1twff_



not modelled 5.3 29
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below