Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2320c_(rocE)_2592733_2594163
DateMon Aug 5 13:25:47 BST 2019
Unique Job ID3ab3edbf5785bc00
SequenceLPTTSMSLRE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.453 Y:54.210 Z:64.351
Model (left) based on template c5oqtA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
Confidence and coverage
Confidence:100.0% Coverage: 95%
454 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oqtA_
100.0 43
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
2c6f2wA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
3c4djiA_
100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
4c6nplA_
100.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
5c6irtB_
100.0 21
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
6c3giaA_
100.0 20
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
7c6jmqA_
100.0 23
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
8c3lrcC_
100.0 18
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
9c6csfC_
100.0 12
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
10c2jlnA_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
11c6c08F_
99.8 13
PDB header:membrane protein
Chain: F: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
12c6c08C_
99.5 13
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
13c5nvaA_
99.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
14c3dh4A_
99.1 9
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
15c2xq2A_
99.0 11
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
16c4wgwA_
98.9 14
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
17c4wgvC_
98.9 14
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
18c5m87A_
98.3 10
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
19c4us3A_
97.3 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
20c4m48A_
97.3 14
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
21c5i6xA_
not modelled 97.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
22c4ainB_
not modelled 97.0 11
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
23d2a65a1
not modelled 96.9 13
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
24c2w8aC_
not modelled 94.4 11
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
25c5kteA_
not modelled 92.4 12
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
26c3hfxA_
not modelled 91.3 10
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
27d1fftb2
not modelled 34.4 12
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
28c5ogeE_
not modelled 30.1 7
PDB header:membrane protein
Chain: E: PDB Molecule:gdp-mannose transporter 1;
PDBTitle: crystal structure of a nucleotide sugar transporter
29c2lowA_
not modelled 29.3 7
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
30c6dt0D_
not modelled 21.7 24
PDB header:transport protein
Chain: D: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of a mitochondrial calcium uniporter
31c2micA_
not modelled 18.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
32c2micB_
not modelled 18.0 16
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
33c4x5mB_
not modelled 16.4 8
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of semisweet in the inward-open conformation
34c6hwhL_
not modelled 13.6 7
PDB header:electron transport
Chain: L: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
35c2jwaA_
not modelled 13.4 14
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
36c2ks1A_
not modelled 13.4 14
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
37c6c14A_
not modelled 12.7 4
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex
38c1ujlA_
not modelled 12.6 9
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h
PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker
39c6e9oA_
not modelled 12.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
40d2iuba2
not modelled 11.9 9
Fold:Transmembrane helix hairpin
Superfamily:Magnesium transport protein CorA, transmembrane region
Family:Magnesium transport protein CorA, transmembrane region
41c4n7wA_
not modelled 11.2 11
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
42c2rddB_
not modelled 11.1 28
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
43c2m67A_
not modelled 10.6 21
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
44c4kppA_
not modelled 9.9 5
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
45c5v2sA_
not modelled 9.7 4
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
46c6p2rB_
not modelled 8.9 8
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
47c2yevB_
not modelled 8.9 17
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
48c6agfB_
not modelled 8.9 8
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
49c2kluA_
not modelled 8.8 7
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
50c1qa4A_
not modelled 8.5 35
PDB header:viral protein
Chain: A: PDB Molecule:protein (hiv-1 nef anchor domain (2-57));
PDBTitle: hiv-1 nef anchor domain, nmr, 2 structures
51c2bbjB_
not modelled 8.4 9
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
52c2ndjA_
not modelled 8.4 7
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
53c5oonA_
not modelled 8.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:undecaprenyl-diphosphatase;
PDBTitle: structure of undecaprenyl-pyrophosphate phosphatase, baca
54c2kogA_
not modelled 8.1 10
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
55c2n2aA_
not modelled 8.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
56c5xamA_
not modelled 8.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
57c3arct_
not modelled 8.0 16
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
58c6h8qH_
not modelled 7.8 36
PDB header:cell cycle
Chain: H: PDB Molecule:sister chromatid cohesion protein 1;
PDBTitle: structural basis for scc3-dependent cohesin recruitment to chromatin
59c1pjnA_
not modelled 7.7 36
PDB header:protein transport
Chain: A: PDB Molecule:histone-binding protein n1/n2;
PDBTitle: mouse importin alpha-bipartite nls n1n2 from xenopus laevis2 phosphoprotein complex
60c2na6B_
not modelled 7.5 4
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
61c2na6C_
not modelled 7.5 4
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
62c2na6A_
not modelled 7.5 4
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
63c5u1dB_
not modelled 7.5 10
PDB header:transport protein
Chain: B: PDB Molecule:antigen peptide transporter 2;
PDBTitle: cryo-em structure of the human tap atp-binding cassette transporter
64c3mk7F_
not modelled 7.5 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
65c5ochF_
not modelled 7.4 14
PDB header:hydrolase
Chain: F: PDB Molecule:atp-binding cassette sub-family b member 8, mitochondrial;
PDBTitle: the crystal structure of human abcb8 in an outward-facing state
66c5xpdA_
not modelled 7.3 9
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
67c3v5uA_
not modelled 7.3 12
PDB header:metal transport
Chain: A: PDB Molecule:uncharacterized membrane protein mj0091;
PDBTitle: structure of sodium/calcium exchanger from methanocaldococcus2 jannaschii dsm 2661
68c6iu3A_
not modelled 7.2 13
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
69c3qf4B_
not modelled 7.2 8
PDB header:transport protein
Chain: B: PDB Molecule:uncharacterized abc transporter atp-binding protein
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
70c5jnqA_
not modelled 6.9 13
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: mray tunicamycin complex
71c4ry2A_
not modelled 6.8 8
PDB header:transport protein/hydrolase
Chain: A: PDB Molecule:abc-type bacteriocin transporter;
PDBTitle: crystal structure of the peptidase-containing abc transporter pcat1
72c5zlgA_
not modelled 6.7 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b reductase 1;
PDBTitle: human duodenal cytochrome b (dcytb) in zinc ion and ascorbate bound2 form
73c2gfpA_
not modelled 6.7 7
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
74c3j46n_
not modelled 6.7 33
PDB header:ribosome/protein transport
Chain: N: PDB Molecule:
PDBTitle: structure of the secy protein translocation channel in action
75c6ajjA_
not modelled 6.7 11
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
76c2momB_
not modelled 6.6 27
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
77c2momC_
not modelled 6.6 27
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
78c5i20C_
not modelled 6.6 6
PDB header:membrane protein
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein
79d1ks9a1
not modelled 6.4 11
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Ketopantoate reductase PanE
80c6h8qG_
not modelled 6.4 31
PDB header:cell cycle
Chain: G: PDB Molecule:sister chromatid cohesion protein 1;
PDBTitle: structural basis for scc3-dependent cohesin recruitment to chromatin
81c3qf4A_
not modelled 6.3 10
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
82c5xsyB_
not modelled 6.3 17
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated sodium channel beta subunit 1;
PDBTitle: structure of the nav1.4-beta1 complex from electric eel
83c2k21A_
not modelled 6.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
84c4qtnB_
not modelled 6.2 13
PDB header:transport protein
Chain: B: PDB Molecule:nicotinamide riboside transporter pnuc;
PDBTitle: crystal structure of the vitamin b3 transporter pnuc
85c2n28A_
not modelled 6.1 7
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
86c6f0gD_
not modelled 6.0 38
PDB header:chaperone
Chain: D: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
87c6f0gC_
not modelled 6.0 38
PDB header:chaperone
Chain: C: PDB Molecule:ip3;
PDBTitle: crystal structure asf1-ip3
88c2kloA_
not modelled 5.9 15
PDB header:cell cycle
Chain: A: PDB Molecule:dna replication factor cdt1;
PDBTitle: structure of the cdt1 c-terminal domain
89c5wb5B_
not modelled 5.7 33
PDB header:translation
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: leishmania if4e-1 bound to leishmania 4e-ip1
90c5lc5A_
not modelled 5.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: structure of mammalian respiratory complex i, class2
91c2yl4A_
not modelled 5.7 10
PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
92c1fftG_
not modelled 5.6 12
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
93c4dncD_
not modelled 5.6 17
PDB header:transcription
Chain: D: PDB Molecule:male-specific lethal 1 homolog;
PDBTitle: crystal structure of human mof in complex with msl1
94c3jcut_
not modelled 5.5 16
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
95c3jcuT_
not modelled 5.5 16
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
96c2k1aA_
not modelled 5.5 15
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
97c4fbyT_
not modelled 5.4 15
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: fs x-ray diffraction of photosystem ii
98c4tnjT_
not modelled 5.4 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
99c4tnhT_
not modelled 5.4 15
PDB header:electron transport,photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below