Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2323c_(-)_2595371_2596279
DateMon Aug 5 13:25:47 BST 2019
Unique Job IDccdb13a61bd4f744
SequenceMENTQRPSFD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.879 Y:46.375 Z:42.572
Model (left) based on template d1h70a_
Top template information
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Dimethylarginine dimethylaminohydrolase DDAH
Confidence and coverage
Confidence:100.0% Coverage: 82%
249 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1h70a_



100.0 20
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Dimethylarginine dimethylaminohydrolase DDAH
2c2ci6A_



100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:ng, ng-dimethylarginine dimethylaminohydrolase 1;
PDBTitle: crystal structure of dimethylarginine2 dimethylaminohydrolase i bound with zinc low ph
3c3i4aA_



100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:n(g),n(g)-dimethylarginine dimethylaminohydrolase 1;
PDBTitle: crystal structure of dimethylarginine dimethylaminohydrolase-1 (ddah-2 1) in complex with n5-(1-iminopropyl)-l-ornithine
4d1s9ra_



100.0 19
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Arginine deiminase
5c4e4jJ_



100.0 22
PDB header:hydrolase
Chain: J: PDB Molecule:arginine deiminase;
PDBTitle: crystal structure of arginine deiminase from mycoplasma penetrans
6c4bofA_



100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:arginine deiminase;
PDBTitle: crystal structure of arginine deiminase from group a streptococcus
7c5wpiB_



100.0 13
PDB header:transferase
Chain: B: PDB Molecule:hsva;
PDBTitle: the virulence-associated protein hsva from the fire blight pathogen2 erwinia amylovora is a polyamine amidinotransferase
8d1bwda_



100.0 17
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Amidinotransferase
9c8jdwA_



100.0 15
PDB header:transferase
Chain: A: PDB Molecule:protein (l-arginine:glycine amidinotransferase);
PDBTitle: crystal structure of human l-arginine:glycine amidinotransferase in2 complex with l-alanine
10c1jdwA_



100.0 15
PDB header:transferase
Chain: A: PDB Molecule:l-arginine\:glycine amidinotransferase;
PDBTitle: crystal structure and mechanism of l-arginine: glycine2 amidinotransferase: a mitochondrial enzyme involved in3 creatine biosynthesis
11d1jdwa_



100.0 15
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Amidinotransferase
12d1rxxa_



100.0 21
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Arginine deiminase
13d1vkpa_



99.6 15
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
14c6b2wB_



99.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:putative peptidyl-arginine deiminase family protein;
PDBTitle: c. jejuni c315s agmatine deiminase with substrate bound
15d2ewoa1



99.6 20
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
16d1xkna_



99.5 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
17d2jera1



99.5 16
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
18c2jerG_



99.5 17
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
19d1zbra1



99.5 20
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
20d2cmua1



99.4 20
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
21c4ytgA_



not modelled 99.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:peptidylarginine deiminase;
PDBTitle: crystal structure of porphyromonas gingivalis peptidylarginine2 deiminase (ppad) mutant c351a in complex with dipeptide met-arg.
22d1ynha1



not modelled 97.0 22
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Succinylarginine dihydrolase-like
23c4n2kA_



not modelled 92.5 26
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (q350a, 0 mm ca2+)
24c4n2gA_



not modelled 92.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-2;
PDBTitle: crystal structure of protein arginine deiminase 2 (d169a, 10 mm ca2+)
25d2dexx3



not modelled 91.6 17
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
26c2dexX_



not modelled 90.4 17
PDB header:hydrolase
Chain: X: PDB Molecule:protein-arginine deiminase type iv;
PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17
27c5hp5A_



not modelled 90.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-1;
PDBTitle: srtucture of human peptidylarginine deiminase type i (pad1)
28c3ff4A_



not modelled 85.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
29d1hx0a2



not modelled 82.6 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
30d3dhpa2



not modelled 81.5 18
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
31d1wd7a_



not modelled 78.6 18
Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
32d1iuka_



not modelled 72.0 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
33d1g94a2



not modelled 69.8 17
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
34d2d59a1



not modelled 68.5 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
35d1jaea2



not modelled 59.5 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
36d1y81a1



not modelled 55.2 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
37c3mw8A_



not modelled 54.7 19
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution
38c1sr9A_



not modelled 44.2 22
PDB header:transferase
Chain: A: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of leua from mycobacterium tuberculosis
39c2duwA_



not modelled 41.7 19
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
40d1q7ra_



not modelled 37.5 10
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
41d1uc8a1



not modelled 36.8 18
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Lysine biosynthesis enzyme LysX, N-terminal domain
42c2ywdA_



not modelled 35.9 9
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
43d1a9xb2



not modelled 32.9 6
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
44c3blpX_



not modelled 31.4 18
PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
45c3x27C_



not modelled 30.0 20
PDB header:lyase
Chain: C: PDB Molecule:cucumopine synthase;
PDBTitle: structure of mcbb in complex with tryptophan
46d1mgta2



not modelled 29.5 21
Fold:Ribonuclease H-like motif
Superfamily:Methylated DNA-protein cysteine methyltransferase domain
Family:Methylated DNA-protein cysteine methyltransferase domain
47c2issF_



not modelled 29.3 12
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
48c1keeH_



not modelled 25.5 8
PDB header:ligase
Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain;
PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
49d2ex4a1



not modelled 24.7 24
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
50c2jrbA_



not modelled 23.9 25
PDB header:rna binding protein
Chain: A: PDB Molecule:orf 1 protein;
PDBTitle: c-terminal domain of orf1p from mouse line-1
51c6rdu2_



not modelled 22.1 17
PDB header:proton transport
Chain: 2: PDB Molecule:asa-2: polytomella f-atp synthase associated subunit 2;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
52d1jida_



not modelled 20.7 16
Fold:SRP19
Superfamily:SRP19
Family:SRP19
53c6eznG_



not modelled 20.5 8
PDB header:membrane protein
Chain: G: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
54c2x4bA_



not modelled 20.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
55c4qawA_



not modelled 20.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:xyn30d;
PDBTitle: structure of modular xyn30d from paenibacillus barcinonensis
56c4rvgA_



not modelled 20.4 19
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
57d1ka9h_



not modelled 20.4 11
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
58c5nc8B_



not modelled 19.6 18
PDB header:transport protein
Chain: B: PDB Molecule:potassium efflux system protein;
PDBTitle: shewanella denitrificans kef ctd in amp bound form
59d1lnga_



not modelled 18.6 14
Fold:SRP19
Superfamily:SRP19
Family:SRP19
60c5nbrB_



not modelled 16.7 16
PDB header:transferase
Chain: B: PDB Molecule:deoxyribosyltransferase;
PDBTitle: 2-desoxiribosyltransferase from leishmania mexicana
61d1f52a1



not modelled 16.6 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Glutamine synthetase, N-terminal domain
Family:Glutamine synthetase, N-terminal domain
62d1a77a2



not modelled 16.4 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
63c5j8jA_



not modelled 16.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase hda1;
PDBTitle: a histone deacetylase from saccharomyces cerevisiae
64c3faxA_



not modelled 16.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
65d1kwga3



not modelled 16.1 26
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:A4 beta-galactosidase middle domain
66c4nx0G_



not modelled 16.1 16
PDB header:hydrolase
Chain: G: PDB Molecule:abp, a gh27 beta-l-arabinopyranosidase;
PDBTitle: crystal structure of abp-wt, a gh27-b-l-arabinopyranosidase from2 geobacillus stearothermophilus
67d1xtpa_



not modelled 15.4 14
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:AD-003 protein-like
68d1p88a_



not modelled 15.1 17
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
69d1rxwa2



not modelled 15.0 8
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
70c3vpbC_



not modelled 14.7 9
PDB header:ligase
Chain: C: PDB Molecule:putative acetylornithine deacetylase;
PDBTitle: argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
71c4zhjA_



not modelled 14.2 13
PDB header:metal binding protein
Chain: A: PDB Molecule:mg-chelatase subunit chlh;
PDBTitle: crystal structure of the catalytic subunit of magnesium chelatase
72d1xpja_



not modelled 14.0 8
Fold:HAD-like
Superfamily:HAD-like
Family:Hypothetical protein VC0232
73c3cueM_



not modelled 13.6 9
PDB header:protein transport
Chain: M: PDB Molecule:transport protein particle 23 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
74c4gudA_



not modelled 13.4 17
PDB header:transferase
Chain: A: PDB Molecule:imidazole glycerol phosphate synthase subunit hish;
PDBTitle: crystal structure of amidotransferase hish from vibrio cholerae
75c2j3tC_



not modelled 13.3 13
PDB header:transport
Chain: C: PDB Molecule:trafficking protein particle complex subunit 1;
PDBTitle: the crystal structure of the bet3-trs33-bet5-trs23 complex.
76c4egjD_



not modelled 13.3 10
PDB header:ligase
Chain: D: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase from burkholderia2 xenovorans
77d1ul1x2



not modelled 13.2 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
78c2kjwA_



not modelled 13.1 17
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: solution structure and backbone dynamics of the permutant p54-55
79d1gjwa2



not modelled 13.1 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
80c2k2wA_



not modelled 12.8 14
PDB header:cell cycle
Chain: A: PDB Molecule:recombination and dna repair protein;
PDBTitle: second brct domain of nbs1
81c2muyA_



not modelled 12.5 22
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: the solution structure of the ftsh periplasmic n-domain
82d1zcza1



not modelled 12.4 13
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
83c3ndjA_



not modelled 12.0 16
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
84d1i1qb_



not modelled 11.9 12
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
85c6c3aB_



not modelled 11.7 8
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: o2-, plp-dependent l-arginine hydroxylase rohp 4-hydroxy-2-2 ketoarginine complex
86c5ubbA_



not modelled 11.7 21
PDB header:transferase
Chain: A: PDB Molecule:alpha n-terminal protein methyltransferase 1b;
PDBTitle: crystal structure of human alpha n-terminal protein methyltransferase2 1b
87d1qipa_



not modelled 11.4 6
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Glyoxalase I (lactoylglutathione lyase)
88c3hh1D_



not modelled 11.3 17
PDB header:transferase
Chain: D: PDB Molecule:tetrapyrrole methylase family protein;
PDBTitle: the structure of a tetrapyrrole methylase family protein domain from2 chlorobium tepidum tls
89c3u7jA_



not modelled 11.3 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
90d2f06a2



not modelled 11.2 17
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:BT0572-like
91c5dmxC_



not modelled 11.2 14
PDB header:ligase
Chain: C: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase from acinetobacter2 baumannii, space group p212121
92d1bf2a3



not modelled 11.1 11
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
93c2pr7A_



not modelled 11.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family;
PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
94c3g12A_



not modelled 10.9 9
PDB header:lyase
Chain: A: PDB Molecule:putative lactoylglutathione lyase;
PDBTitle: crystal structure of a putative lactoylglutathione lyase from2 bdellovibrio bacteriovorus
95c4egqD_



not modelled 10.7 11
PDB header:ligase
Chain: D: PDB Molecule:d-alanine--d-alanine ligase;
PDBTitle: crystal structure of d-alanine-d-alanine ligase b from burkholderia2 pseudomallei
96d1vsra_



not modelled 10.7 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
97c1kmcB_



not modelled 10.7 14
PDB header:apoptosis/hydrolase
Chain: B: PDB Molecule:caspase-7;
PDBTitle: crystal structure of the caspase-7 / xiap-bir2 complex
98c3d8tB_



not modelled 10.5 14
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: thermus thermophilus uroporphyrinogen iii synthase
99c4x84C_



not modelled 10.5 33
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa

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