Phyre 2 Results for RVBD2328_(PE23)_2600741

Email	mdejesus@rockefeller.edu
Description	RVBD2328_(PE23)_2600741_2601889
Date	Mon Aug 5 13:25:47 BST 2019
Unique Job ID	3f3e27d2bf18df34
Sequence	MQFLSVIPEQ ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:32.655 Y:24.836 Z:37.832

Model (left) based on template c3ultB_

Top template information

PDB header:antifreeze protein
Chain: B: PDB Molecule:ice recrystallization inhibition protein-like protein;
PDBTitle: crystal structure of an ice-binding protein from the perennial2 ryegrass, lolium perenne

Confidence and coverage

Confidence:

98.5%

Coverage:

28%

108 residues ( 28% of your sequence) have been modelled with 98.5% confidence by the single highest scoring template.

Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.

378 residues ( 99%) could be modelled at >90% confidence using multiple-templates.

You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.

Warning: 55% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

Domain analysis [Show]

Rank Aligned region

PDB 3ult chain B

3D model

Region: 271 - 378
Aligned: 108
Modelled: 108
Confidence: 98.5%
Identity: 16%
PDB header:antifreeze protein
Chain: B: PDB Molecule:ice recrystallization inhibition protein-like protein;
PDBTitle: crystal structure of an ice-binding protein from the perennial2 ryegrass, lolium perenne

Phyre2

PDB 5xfs chain A

3D model

Region: 7 - 84
Aligned: 78
Modelled: 78
Confidence: 98.1%
Identity: 50%
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis

Phyre2

PDB 2g38 chain A

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 97.9%
Identity: 36%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis

Phyre2

PDB 2g38 chain A domain 1

3D model

Region: 8 - 84
Aligned: 77
Modelled: 77
Confidence: 97.9%
Identity: 36%
Fold: Ferritin-like
Superfamily: PE/PPE dimer-like
Family: PE

Phyre2

PDB 1qu7 chain A

Region: 186 - 369
Aligned: 183
Modelled: 184
Confidence: 97.7%
Identity: 14%
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor

Phyre2

PDB 2ch7 chain A

3D model

Region: 5 - 369
Aligned: 308
Modelled: 309
Confidence: 97.5%
Identity: 9%
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima

Phyre2

PDB 3s6l chain D

3D model

Region: 293 - 382
Aligned: 90
Modelled: 90
Confidence: 94.2%
Identity: 19%
PDB header:cell adhesion
Chain: D: PDB Molecule:hep_hag family;
PDBTitle: crystal structure of a yada-like head domain of the trimeric2 autotransporter adhesin boaa from burkholderia pseudomallei solved by3 iodide ion sad phasing

Phyre2

PDB 2yo3 chain C

3D model

Region: 221 - 361
Aligned: 141
Modelled: 141
Confidence: 94.0%
Identity: 7%
PDB header:membrane protein
Chain: C: PDB Molecule:general control protein gcn4, putative inner membrane
PDBTitle: salmonella enterica sada 1185-1386 fused to gcn4 adaptors (sadak14)

Phyre2

PDB 5ic1 chain A

3D model

Region: 9 - 369
Aligned: 361
Modelled: 361
Confidence: 93.2%
Identity: 9%
PDB header:peptide binding protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: structural analysis of a talin triple domain module, e1794y, e1797y,2 q1801y mutant

Phyre2

PDB 2xqh chain A

3D model

Region: 307 - 372
Aligned: 66
Modelled: 66
Confidence: 44.7%
Identity: 17%
PDB header:cell adhesion
Chain: A: PDB Molecule:immunoglobulin-binding protein eibd;
PDBTitle: crystal structure of an immunoglobulin-binding fragment of the2 trimeric autotransporter adhesin eibd

Phyre2

PDB 3ntn chain B

3D model

Region: 290 - 379
Aligned: 90
Modelled: 90
Confidence: 41.6%
Identity: 9%
PDB header:membrane protein
Chain: B: PDB Molecule:uspa1;
PDBTitle: crystal structure of uspa1 head and neck domain from moraxella2 catarrhalis

Phyre2

PDB 4iog chain D

3D model

Region: 1 - 79
Aligned: 79
Modelled: 79
Confidence: 9.7%
Identity: 10%
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne

Phyre2

PDB 2yo1 chain A

3D model

Region: 297 - 378
Aligned: 82
Modelled: 82
Confidence: 8.9%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:general control protein gcn4, putative inner membrane
PDBTitle: salmonella enterica sada 1049-1304 fused to gcn4 adaptors (sadak9-2 cfii)

Phyre2

PDB 1p9h chain A

3D model

Region: 311 - 377
Aligned: 67
Modelled: 67
Confidence: 7.8%
Identity: 13%
Fold: Single-stranded left-handed beta-helix
Superfamily: Adhesin YadA, collagen-binding domain
Family: Adhesin YadA, collagen-binding domain

Phyre2

PDB 1p9h chain A

Region: 311 - 377
Aligned: 67
Modelled: 67
Confidence: 7.8%
Identity: 13%
PDB header:cell adhesion
Chain: A: PDB Molecule:invasin;
PDBTitle: crystal structure of the collagen-binding domain of yersinia adhesin2 yada

Phyre2

1
c3ultB_

2
c5xfsA_

3
c2g38A_

4
d2g38a1

5
c1qu7A_

6
c2ch7A_

7
c3s6lD_

8
c2yo3C_

9
c5ic1A_

10
c2xqhA_

11
c3ntnB_

12
c4iogD_

13
c2yo1A_

14
d1p9ha_

15
c1p9hA_