Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2329c_(narK1)_2601924_2603471
DateMon Aug 5 13:25:48 BST 2019
Unique Job IDd0097d34c108cffa
SequenceMEQHTLLQRE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.814 Y:69.347 Z:80.135
Model (left) based on template c4iu8A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
Confidence and coverage
Confidence:100.0% Coverage: 82%
421 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
483 residues ( 94%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4iu8A_



100.0 33
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
2c4iu9A_



100.0 35
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
3d1pw4a_



100.0 13
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
4c6e9oA_



100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
5c3o7pA_



100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
6c4ldsB_



100.0 12
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
7c4zp0A_



100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
8c3wdoA_



100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
9c6g9xB_



100.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
10c6h7dA_



100.0 10
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
11c6gs7A_



100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
12c4cl5B_



100.0 12
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
13c4ybqB_



100.0 10
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
14c6exsA_



100.0 9
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
15c5c65A_



100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
16c4ikyA_



100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
17c4j05A_



100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
18c4apsB_



100.0 10
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
19c4pypA_



100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
20c4w6vA_



100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
21d1pv7a_



not modelled 100.0 13
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
22c1pv7B_



not modelled 100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
23c6ei3A_



not modelled 100.0 11
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
24c2gfpA_



not modelled 100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
25c4q65A_



not modelled 100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
26c4lepB_



not modelled 100.0 11
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
27c4gbzA_



not modelled 100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
28c2xutC_



not modelled 100.0 11
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
29c5aynA_



not modelled 99.9 10
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
30c5aymA_



not modelled 99.9 9
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
31c4m64D_



not modelled 99.8 11
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
32c6ob7A_



not modelled 99.6 13
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
33c4djiA_



not modelled 31.1 6
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
34c3mkuB_



not modelled 26.3 7
PDB header:transport protein
Chain: B: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
35c5m73H_



not modelled 20.3 19
PDB header:rna binding protein
Chain: H: PDB Molecule:signal recognition particle subunit srp72;
PDBTitle: structure of the human srp s domain with srp72 rna-binding domain
36c3utmC_



not modelled 14.9 23
PDB header:transferase/signaling protein
Chain: C: PDB Molecule:axin-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
37c4grvA_



not modelled 13.7 12
PDB header:signaling protein/agonist
Chain: A: PDB Molecule:neurotensin receptor type 1, lysozyme chimera;
PDBTitle: the crystal structure of the neurotensin receptor nts1 in complex with2 neurotensin (8-13)
38c4gnsA_



not modelled 11.7 27
PDB header:transport protein
Chain: A: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-chs6 exomer cargo adaptor complex
39c4yg8A_



not modelled 11.7 27
PDB header:transport protein
Chain: A: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-chs6 exomer cargo adaptor complex
40c2l92A_



not modelled 11.0 24
PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
41c5aezA_



not modelled 10.9 8
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
42c5t86A_



not modelled 9.4 21
PDB header:toxin
Chain: A: PDB Molecule:cdia toxin;
PDBTitle: crystal structure of cdi complex from e. coli a0 34/86
43c4u3hA_



not modelled 9.2 19
PDB header:de novo protein
Chain: A: PDB Molecule:fn3con;
PDBTitle: crystal structure of fn3con
44c2rqmA_



not modelled 9.2 18
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesoderm development (mesd) - open2 conformation
45c3mkuA_



not modelled 7.9 6
PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
46c2l23A_



not modelled 7.8 18
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 25;
PDBTitle: nmr structure of the acid (activator interacting domain) of the human2 mediator med25 protein
47d1x4za1



not modelled 7.6 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
48c3ukxC_



not modelled 7.5 25
PDB header:protein transport/inhibitor
Chain: C: PDB Molecule:bimax2 peptide;
PDBTitle: mouse importin alpha: bimax2 peptide complex
49c3hd6A_



not modelled 7.4 6
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
50c3fdfA_



not modelled 7.1 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:fr253;
PDBTitle: crystal structure of the serine phosphatase of rna2 polymerase ii ctd (ssu72 superfamily) from drosophila3 melanogaster. orthorhombic crystal form. northeast4 structural genomics consortium target fr253.
51c2b2hA_



not modelled 7.1 11
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
52c2y94C_



not modelled 6.8 38
PDB header:transferase
Chain: C: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1;
PDBTitle: structure of an active form of mammalian ampk
53c5x33A_



not modelled 6.5 6
PDB header:membrane protein
Chain: A: PDB Molecule:ltb4 receptor,lysozyme,ltb4 receptor;
PDBTitle: leukotriene b4 receptor blt1 in complex with biil260
54d1u7ka_



not modelled 6.5 15
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
55c3o2sB_



not modelled 6.4 36
PDB header:hydrolase
Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase
PDBTitle: crystal structure of the human symplekin-ssu72 complex
56c4z8vA_



not modelled 6.3 18
PDB header:protein binding
Chain: A: PDB Molecule:avrrxo1-orf1;
PDBTitle: crystal structure of avrrxo1-orf1:-orf2 complex, native.
57c1zzaA_



not modelled 6.2 19
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
58c3o2qB_



not modelled 6.2 36
PDB header:hydrolase
Chain: B: PDB Molecule:rna polymerase ii subunit a c-terminal domain phosphatase
PDBTitle: crystal structure of the human symplekin-ssu72-ctd phosphopeptide2 complex
59c2g9pA_



not modelled 6.2 14
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
60c6hwyB_



not modelled 6.2 21
PDB header:viral protein
Chain: B: PDB Molecule:putative gag polyprotein;
PDBTitle: mature mlv capsid pentamer structure in intact virus particles
61c6nbxG_



not modelled 6.0 15
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
62c2bbjB_



not modelled 5.7 8
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
63c6hwwA_



not modelled 5.6 21
PDB header:viral protein
Chain: A: PDB Molecule:putative gag polyprotein;
PDBTitle: immature mlv capsid hexamer structure in intact virus particles
64d1ejga_



not modelled 5.5 25
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
65c2nuuF_



not modelled 5.5 10
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
66c3lcnC_



not modelled 5.4 44
PDB header:nuclear protein
Chain: C: PDB Molecule:mrna transport factor gfd1;
PDBTitle: nab2:gfd1 complex
67d1wfua_



not modelled 5.4 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
68c3lcnD_



not modelled 5.3 44
PDB header:nuclear protein
Chain: D: PDB Molecule:mrna transport factor gfd1;
PDBTitle: nab2:gfd1 complex

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Transmembrane helix prediction 

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