Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2331_(-)_2604307_2604693
DateMon Aug 5 13:25:48 BST 2019
Unique Job IDe4c70823d45cf04b
SequenceVPPVFLPQIG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.629 Y:39.043 Z:55.348
Model (left) based on template d1kqfa2
Top template information
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
Confidence and coverage
Confidence: 99.2% Coverage: 49%
63 residues ( 49% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1kqfa2
99.2 29
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
2c1kqgA_
99.0 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit;
PDBTitle: formate dehydrogenase n from e. coli
3c1h0hA_
98.8 27
PDB header:electron transport
Chain: A: PDB Molecule:formate dehydrogenase subunit alpha;
PDBTitle: tungsten containing formate dehydrogenase from desulfovibrio gigas
4d1h0ha2
98.8 25
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
5d1ogya2
98.8 29
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
6d2jioa2
98.7 35
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
7c4aayE_
98.6 27
PDB header:oxidoreductase
Chain: E: PDB Molecule:aroa;
PDBTitle: crystal structure of the arsenite oxidase protein complex2 from rhizobium species strain nt-26
8c2nyaF_
98.5 30
PDB header:oxidoreductase
Chain: F: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
9c2v45A_
98.5 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
10d2iv2x2
98.4 29
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
11c2iv2X_
98.3 29
PDB header:oxidoreductase
Chain: X: PDB Molecule:formate dehydrogenase h;
PDBTitle: reinterpretation of reduced form of formate dehydrogenase h from e.2 coli
12c1ogyA_
98.3 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
13d1y5ia2
98.2 23
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
14c2ivfA_
98.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
15c5ch7E_
98.1 25
PDB header:oxidoreductase
Chain: E: PDB Molecule:dmso reductase family type ii enzyme, molybdopterin
PDBTitle: crystal structure of the perchlorate reductase pcrab - phe164 gate2 switch intermediate - from azospira suillum ps
16d1g8ka2
97.8 34
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
17c1g8jC_
97.8 30
PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
18c2vpyE_
97.8 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:thiosulfate reductase;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
19c1y5iA_
97.8 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
20d1dmra2
97.7 21
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
21c1tmoA_
not modelled 97.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:trimethylamine n-oxide reductase;
PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
22c1eu1A_
not modelled 97.4 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethyl sulfoxide reductase;
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
23d1tmoa2
not modelled 97.3 17
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
24d1eu1a2
not modelled 97.2 26
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
25c1vlfQ_
not modelled 97.1 28
PDB header:oxidoreductase
Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici complexed with inhibitor 1,2,4,5-3 tetrahydroxy-benzene
26c6cz7C_
not modelled 97.1 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:arra;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3
27c1h5nC_
not modelled 96.7 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
28c2e7zA_
not modelled 96.3 25
PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
29d1vlfm2
not modelled 95.9 17
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
30c5t5mB_
not modelled 88.0 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdb;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, trigonal form at 2.5 a.
31d1ja1a1
not modelled 58.5 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
32c2ev2B_
not modelled 48.6 13
PDB header:lyase
Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5
33d1jb9a1
not modelled 43.8 23
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
34d1ddga1
not modelled 42.6 31
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
35c1l0oC_
not modelled 39.2 26
PDB header:protein binding
Chain: C: PDB Molecule:sigma factor;
PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
36d1l0oc_
not modelled 39.2 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
37c2kvtA_
not modelled 34.7 54
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yaia;
PDBTitle: solution nmr structure of yaia from escherichia eoli. northeast2 structural genomics target er244
38d1f20a1
not modelled 32.4 33
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:NADPH-cytochrome p450 reductase FAD-binding domain-like
39d1ku2a1
not modelled 26.8 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma3 domain
40d1r8da_
not modelled 26.1 15
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
41d2fug32
not modelled 23.0 15
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
42c6j7aB_
not modelled 21.2 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:heme oxygenase 1,nadph--cytochrome p450 reductase;
PDBTitle: fusion protein of heme oxygenase-1 and nadph cytochrome p450 reductase2 (17aa)
43c6nu9A_
not modelled 20.7 32
PDB header:viral protein
Chain: A: PDB Molecule:zinc-binding non-structural protein;
PDBTitle: crystal structure of a zinc-binding non-structural protein from the2 hepatitis e virus
44c2bpoA_
not modelled 19.7 23
PDB header:reductase
Chain: A: PDB Molecule:nadph-cytochrom p450 reductase;
PDBTitle: crystal structure of the yeast cpr triple mutant: d74g, y75f, k78a.
45c3qftA_
not modelled 18.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph--cytochrome p450 reductase;
PDBTitle: crystal structure of nadph-cytochrome p450 reductase (fad/nadph domain2 and r457h mutant)
46c2qtzA_
not modelled 17.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine synthase reductase;
PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase
47c3hh0C_
not modelled 17.4 0
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr family from2 bacillus cereus
48d2bw3a1
not modelled 16.3 33
Fold:Hermes dimerisation domain
Superfamily:Hermes dimerisation domain
Family:Hermes dimerisation domain
49c6amaO_
not modelled 15.1 21
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
50c3mqiA_
not modelled 14.1 26
PDB header:transcription activator
Chain: A: PDB Molecule:transcription factor coe1;
PDBTitle: human early b-cell factor 1 (ebf1) ipt/tig domain
51c1y6uA_
not modelled 14.0 13
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
52c1f20A_
not modelled 13.6 37
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution.
53c6efvA_
not modelled 13.0 31
PDB header:flavoprotein
Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha-component;
PDBTitle: the nadph-dependent sulfite reductase flavoprotein adopts an extended2 conformation that is unique to this diflavin reductase
54c4ediC_
not modelled 12.0 18
PDB header:transport protein
Chain: C: PDB Molecule:ethanolamine utilization protein;
PDBTitle: disulfide bonded eutl from clostridium perfringens
55d1qfza1
not modelled 11.8 42
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
56c5o5jE_
not modelled 11.8 22
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
57c1ifpA_
not modelled 11.1 39
PDB header:virus
Chain: A: PDB Molecule:major coat protein assembly;
PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly
58c1tllA_
not modelled 10.7 37
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
59c3t0yA_
not modelled 10.1 12
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
60c3ezfA_
not modelled 9.7 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein
61c1ddiA_
not modelled 9.6 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha-component;
PDBTitle: crystal structure of sir-fp60
62c2jmlA_
not modelled 9.3 15
PDB header:transcription
Chain: A: PDB Molecule:dna binding domain/transcriptional regulator;
PDBTitle: solution structure of the n-terminal domain of cara repressor
63c4l4qA_
not modelled 8.9 67
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: methionine adenosyltransferase
64c2dqbB_
not modelled 8.6 26
PDB header:hydrolase, dna binding protein
Chain: B: PDB Molecule:deoxyguanosinetriphosphate triphosphohydrolase, putative;
PDBTitle: crystal structure of dntp triphosphohydrolase from thermus2 thermophilus hb8, which is homologous to dgtp triphosphohydrolase
65c3dupB_
not modelled 8.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170
66c2fugC_
not modelled 8.1 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
67c4dqkA_
not modelled 8.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:bifunctional p-450/nadph-p450 reductase;
PDBTitle: crystal structure of the fad binding domain of cytochrome p450 bm3
68c3io0A_
not modelled 8.0 36
PDB header:structural protein
Chain: A: PDB Molecule:etub protein;
PDBTitle: crystal structure of etub from clostridium kluyveri
69d2p7vb1
not modelled 7.9 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
70c1dpuA_
not modelled 7.3 15
PDB header:dna binding protein
Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain;
PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88)
71d1dpua_
not modelled 7.3 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of RPA32
72c4cc9B_
not modelled 7.3 20
PDB header:protein binding
Chain: B: PDB Molecule:protein vpx;
PDBTitle: crystal structure of human samhd1 (amino acid residues 582-626) bound2 to vpx isolated from sooty mangabey and human dcaf1 (amino acid3 residues 1058-1396)
73c4hpvA_
not modelled 7.1 67
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from sulfolobus2 solfataricus
74c4fayC_
not modelled 7.0 24
PDB header:glycerol-binding protein
Chain: C: PDB Molecule:microcompartments protein;
PDBTitle: crystal structure of a trimeric bacterial microcompartment shell2 protein pdub with glycerol metabolites
75c1j9zB_
not modelled 7.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
76c4r4eA_
not modelled 6.8 17
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
77c2lfwA_
not modelled 6.7 12
PDB header:signaling protein
Chain: A: PDB Molecule:phyr sigma-like domain;
PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
78c2vz4A_
not modelled 6.6 11
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
79c5af3A_
not modelled 6.5 6
PDB header:dna binding
Chain: A: PDB Molecule:vapbc49;
PDBTitle: x-ray crystal structure of rv2018 from mycobacterium tuberculosis
80c5c8eC_
not modelled 6.4 25
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:light-dependent transcriptional regulator carh;
PDBTitle: crystal structure of thermus thermophilus carh bound to2 adenosylcobalamin and a 26-bp dna segment
81c5u4nA_
not modelled 6.1 25
PDB header:lyase
Chain: A: PDB Molecule:fructose-1;
PDBTitle: crystal structure of a fructose-bisphosphate aldolase from neisseria2 gonorrhoeae
82c3u27D_
not modelled 6.1 19
PDB header:structural protein
Chain: D: PDB Molecule:microcompartments protein;
PDBTitle: crystal structure of ethanolamine utilization protein eutl from2 leptotrichia buccalis c-1013-b
83c5z9aB_
not modelled 6.0 31
PDB header:lyase
Chain: B: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from pseudomonas aeruginosa
84c3iwfA_
not modelled 5.7 6
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
85c5i44E_
not modelled 5.4 17
PDB header:dna binding protein/dna
Chain: E: PDB Molecule:chromosome-anchoring protein raca;
PDBTitle: structure of raca-dna complex; p21 form

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