Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2336_(-)_2610847_2611815
DateMon Aug 5 13:25:48 BST 2019
Unique Job ID8eff3933f5cca657
SequenceMDVPHEQPAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.618 Y:10.869 Z:9.627
Model (left) based on template c2f5zK_
Top template information
PDB header:oxidoreductase/protein binding
Chain: K: PDB Molecule:pyruvate dehydrogenase protein x component;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 (e3) complexed to the e3-binding domain of human e3-3 binding protein
Confidence and coverage
Confidence: 41.6% Coverage: 3%
11 residues ( 3% of your sequence) have been modelled with 41.6% confidence by the single highest scoring template.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2f5zK_



41.6 73
PDB header:oxidoreductase/protein binding
Chain: K: PDB Molecule:pyruvate dehydrogenase protein x component;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 (e3) complexed to the e3-binding domain of human e3-3 binding protein
2c1zy8M_



40.6 73
PDB header:oxidoreductase
Chain: M: PDB Molecule:pyruvate dehydrogenase protein x component,
PDBTitle: the crystal structure of dihydrolipoamide dehydrogenase and2 dihydrolipoamide dehydrogenase-binding protein (didomain)3 subcomplex of human pyruvate dehydrogenase complex.
3c2f60K_



31.3 64
PDB header:protein binding
Chain: K: PDB Molecule:pyruvate dehydrogenase protein x component;
PDBTitle: crystal structure of the dihydrolipoamide dehydrogenase (e3)-binding2 domain of human e3-binding protein
4c5h0jA_



25.6 47
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of wt pedobacter heparinus smug2
5c3kwvF_



23.4 38
PDB header:toxin/protein transport
Chain: F: PDB Molecule:lethal factor;
PDBTitle: structural basis for the unfolding of anthrax lethal factor by2 protective antigen oligomers
6c3ah5E_



21.6 17
PDB header:transferase
Chain: E: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump
7d1j7na1



21.4 38
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Anthrax toxin lethal factor, N- and C-terminal domains
8c4pugA_



19.6 20
PDB header:dna binding protein
Chain: A: PDB Molecule:bola like protein;
PDBTitle: bola1 from arabidopsis thaliana
9c5x42B_



17.7 54
PDB header:protein transport
Chain: B: PDB Molecule:icmo (dotl);
PDBTitle: structure of dotl(590-659)-dotn derived from legionella pneumophila
10d1oe4a_



16.2 31
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
11c3o2eA_



16.0 29
PDB header:unknown function
Chain: A: PDB Molecule:bola-like protein;
PDBTitle: crystal structure of a bol-like protein from babesia bovis
12c5nfmA_



14.7 24
PDB header:ligase
Chain: A: PDB Molecule:yrba;
PDBTitle: crystal structure of yrba from sinorhizobium meliloti in complex with2 copper.
13c5h93C_



14.3 53
PDB header:hydrolase
Chain: C: PDB Molecule:geobacter metallireducens smug1;
PDBTitle: crystal structure of geobacter metallireducens smug1
14c2hacA_



14.1 63
PDB header:membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
15c2hacB_



14.1 63
PDB header:membrane protein
Chain: B: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain;
PDBTitle: structure of zeta-zeta transmembrane dimer
16c5w6yB_



14.0 64
PDB header:biosynthetic protein,isomerase
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: physcomitrella patens chorismate mutase
17c2q2kB_



13.9 48
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
18c2q2kA_



12.8 48
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
19c6h3pB_



12.1 55
PDB header:plant protein
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of the cytoplasmic chorismate mutase from zea mays
20d5csma_



12.1 27
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
21c2af6G_



not modelled 12.1 33
PDB header:transferase
Chain: G: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of mycobacterium tuberculosis flavin dependent2 thymidylate synthase (mtb thyx) in the presence of co-factor fad and3 substrate analog 5-bromo-2'-deoxyuridine-5'-monophosphate (brdump)
22c4ppuA_



not modelled 12.0 55
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase 1, chloroplastic;
PDBTitle: crystal structure of atcm1 with tyrosine bound in allosteric site
23c5w8cA_



not modelled 11.4 18
PDB header:biosynthetic protein
Chain: A: PDB Molecule:autoinducer synthase;
PDBTitle: the structure of a coa-dependent acyl-homoserine lactone synthase,2 bjai, with mta and isovaleryl-coa
24d1pv8a_



not modelled 11.0 22
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
25c5uebA_



not modelled 10.3 22
PDB header:unknown function
Chain: A: PDB Molecule:negoa.19184.a;
PDBTitle: novel crystal structure of a hypothetical protein from neisseria2 gonorrhoeae
26c2dhmA_



not modelled 9.1 17
PDB header:protein binding
Chain: A: PDB Molecule:protein bola;
PDBTitle: solution structure of the bola protein from escherichia coli
27c3tr3A_



not modelled 9.0 31
PDB header:unknown function
Chain: A: PDB Molecule:bola;
PDBTitle: structure of a bola protein homologue from coxiella burnetii
28c1v60A_



not modelled 8.9 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:riken cdna 1810037g04;
PDBTitle: solution structure of bola1 protein from mus musculus
29c3fnnA_



not modelled 8.7 27
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase thyx;
PDBTitle: biochemical and structural analysis of an atypical thyx:2 corynebacterium glutamicum nchu 87078 depends on thya for3 thymidine biosynthesis
30c3obkH_



not modelled 8.3 23
PDB header:lyase
Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase;
PDBTitle: crystal structure of delta-aminolevulinic acid dehydratase2 (porphobilinogen synthase) from toxoplasma gondii me49 in complex3 with the reaction product porphobilinogen
31d2c1ha1



not modelled 7.9 27
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
32c4k59A_



not modelled 7.8 43
PDB header:rna binding protein
Chain: A: PDB Molecule:rna binding protein rsmf;
PDBTitle: crystal structure of pseudomonas aeruginosa rsmf
33c1xs3A_



not modelled 7.5 34
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein xc975;
PDBTitle: solution structure analysis of the xc975 protein
34c1xfzA_



not modelled 7.2 31
PDB header:lyase/metal binding protein
Chain: A: PDB Molecule:calmodulin-sensitive adenylate cyclase;
PDBTitle: crystal structure of anthrax edema factor (ef) in complex with2 calmodulin in the presence of 1 millimolar exogenously added calcium3 chloride
35c1xfuE_



not modelled 7.2 31
PDB header:lyase/metal binding protein
Chain: E: PDB Molecule:calmodulin-sensitive adenylate cyclase;
PDBTitle: crystal structure of anthrax edema factor (ef) truncation mutant, ef-2 delta 64 in complex with calmodulin
36d1h7na_



not modelled 7.2 27
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
37c4puiA_



not modelled 6.7 34
PDB header:protein binding
Chain: A: PDB Molecule:sufe-like protein, chloroplastic;
PDBTitle: bola domain of sufe1 from arabidopsis thaliana
38c6fpgG_



not modelled 6.4 29
PDB header:cell invasion
Chain: G: PDB Molecule:chromosome 16, whole genome shotgun sequence;
PDBTitle: structure of the ustilago maydis chorismate mutase 1 in complex with a2 zea mays kiwellin
39d2csua1



not modelled 6.3 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
40c2mm9A_



not modelled 6.2 43
PDB header:transcription
Chain: A: PDB Molecule:bola2;
PDBTitle: solution structure of reduced bola2 from arabidopsis thaliana
41c2nclA_



not modelled 5.7 14
PDB header:protein binding
Chain: A: PDB Molecule:bola-like protein 3;
PDBTitle: solution structure of bola3 from homo sapiens
42d1gzga_



not modelled 5.7 28
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
43c3gmvX_



not modelled 5.6 40
PDB header:protein binding
Chain: X: PDB Molecule:beta-lactamase inhibitory protein blip-i;
PDBTitle: crystal structure of beta-lactamse inhibitory protein-i (blip-i) in2 apo form
44d1coka_



not modelled 5.6 11
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
45c3gmxB_



not modelled 5.5 53
PDB header:protein binding
Chain: B: PDB Molecule:blp;
PDBTitle: crystal structure of beta-lactamse inhibitory protein-like protein2 (blp) at 1.05 angstrom resolution
46c1pwqA_



not modelled 5.4 38
PDB header:hydrolase
Chain: A: PDB Molecule:lethal factor;
PDBTitle: crystal structure of anthrax lethal factor complexed with2 thioacetyl-tyr-pro-met-amide, a metal-chelating peptidyl3 small molecule inhibitor
47d2py5a2



not modelled 5.3 41
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:DNA polymerase I
48d1l6sa_



not modelled 5.2 25
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
49c5lzlH_



not modelled 5.1 32
PDB header:lyase
Chain: H: PDB Molecule:delta-aminolevulinic acid dehydratase;
PDBTitle: pyrobaculum calidifontis 5-aminolaevulinic acid dehydratase
50c3pmkR_



not modelled 5.1 53
PDB header:viral protein
Chain: R: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex
51c3pmkP_



not modelled 5.1 53
PDB header:viral protein
Chain: P: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex
52c5dcaA_



not modelled 5.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2;
PDBTitle: crystal structure of yeast full length brr2 in complex with prp8 jab12 domain
53c5oooA_



not modelled 5.0 34
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein ns-s;
PDBTitle: structure of the rift valley fever virus nss protein core domain
54c3pmkN_



not modelled 5.0 53
PDB header:viral protein
Chain: N: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the vesicular stomatitis virus rna free2 nucleoprotein/phosphoprotein complex

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