Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2341_(lppQ)_2619607_2620026
DateMon Aug 5 13:25:49 BST 2019
Unique Job ID522bcefd831c135d
SequenceMPVGGRQHVF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.371 Y:8.285 Z:16.627
Model (left) based on template d1c5ea_
Top template information
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
Confidence and coverage
Confidence: 35.0% Coverage: 8%
11 residues ( 8% of your sequence) have been modelled with 35.0% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1c5ea_
35.0 18
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
2d2h62d1
33.3 18
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
3c1djyB_
26.1 33
PDB header:lipid degradation
Chain: B: PDB Molecule:phosphoinositide-specific phospholipase c,
PDBTitle: phosphoinositide-specific phospholipase c-delta1 from rat2 complexed with inositol-2,4,5-trisphosphate
4c5x3lA_
25.7 56
PDB header:antimicrobial protein
Chain: A: PDB Molecule:pilosulin-1;
PDBTitle: solution structure of a novel antimicrobial peptide, p1, from jumper2 ant myrmecia pilosula
5c4pewB_
23.3 27
PDB header:hydrolase
Chain: B: PDB Molecule:putative secreted protein;
PDBTitle: structure of sactelam55a from streptomyces sp. sirexaa-e
6c2xfeA_
20.7 50
PDB header:sugar binding protein
Chain: A: PDB Molecule:carbohydrate binding module;
PDBTitle: vcbm60 in complex with galactobiose
7c5gzxD_
18.9 26
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
8d1td4a_
17.5 45
Fold:beta-clip
Superfamily:Head decoration protein D (gpD, major capsid protein D)
Family:Head decoration protein D (gpD, major capsid protein D)
9d1e8ob_
16.9 56
Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14
10c4faoL_
16.5 18
PDB header:signaling protein/signaling protein
Chain: L: PDB Molecule:activin receptor type-2b;
PDBTitle: specificity and structure of a high affinity activin-like 1 (alk1)2 signaling complex
11c4bxtD_
15.6 70
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
12c5oixA_
15.6 70
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
13c5oixE_
15.6 70
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
14c5oiyE_
15.6 70
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
15c5oiyG_
15.6 70
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
16c5oixF_
15.4 70
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
17c5oiyC_
15.3 70
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
18c4bxtG_
15.2 70
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
19c5oiyA_
15.2 70
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
20c5oiyB_
15.2 70
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
21c5oixC_
not modelled 15.0 70
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
22c4bxtF_
not modelled 14.9 70
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
23c5oiyH_
not modelled 14.9 70
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
24c4bxtB_
not modelled 14.9 70
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
25c5oixB_
not modelled 14.9 70
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
26c4bxtE_
not modelled 14.9 70
PDB header:viral protein
Chain: E: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
27c5oixG_
not modelled 14.7 70
PDB header:viral protein
Chain: G: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
28c4bxtH_
not modelled 14.5 70
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
29c5oiyF_
not modelled 14.5 70
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
30c5oixH_
not modelled 13.7 70
PDB header:viral protein
Chain: H: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
31c5oiyD_
not modelled 13.7 70
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 2.2 a
32c5oixD_
not modelled 13.7 70
PDB header:viral protein
Chain: D: PDB Molecule:phosphoprotein;
PDBTitle: structure of the hmpv p oligomerization domain at 1.6 a
33c4bxtA_
not modelled 13.7 70
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
34c4bxtC_
not modelled 13.7 70
PDB header:viral protein
Chain: C: PDB Molecule:phosphoprotein p;
PDBTitle: crystal structure of the human metapneumovirus2 phosphoprotein tetramerization domain
35d1qasa2
not modelled 13.4 33
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
36c3ff0A_
not modelled 13.0 19
PDB header:biosynthetic protein
Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2;
PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution
37c3ghpA_
not modelled 12.8 26
PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: structure of the second type ii cohesin module from the adaptor scaa2 scaffoldin of acetivibrio cellulolyticus (including long c-terminal3 linker)
38d1btea_
not modelled 12.3 39
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
39c2hlqA_
not modelled 12.1 17
PDB header:transferase
Chain: A: PDB Molecule:bone morphogenetic protein receptor type-2;
PDBTitle: crystal structure of the extracellular domain of the type2 ii bmp receptor
40d1g0da4
not modelled 11.8 33
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
41c2l9uB_
not modelled 11.7 44
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
42c2l9uA_
not modelled 11.7 44
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
43c5lo2A_
not modelled 11.2 54
PDB header:structural protein
Chain: A: PDB Molecule:ppatyr;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
44c5lo4A_
not modelled 11.1 54
PDB header:structural protein
Chain: A: PDB Molecule:ppa-ch3;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
45c5lo3A_
not modelled 11.1 54
PDB header:structural protein
Chain: A: PDB Molecule:ppaome;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
46d2bpa1_
not modelled 10.0 32
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
47c1yz2A_
not modelled 8.5 55
PDB header:toxin
Chain: A: PDB Molecule:delta-conotoxin am 2766;
PDBTitle: solution structure of am2766
48d1kvpa_
not modelled 8.3 32
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:ssDNA viruses
Family:Microviridae-like VP
49d1lmra_
not modelled 8.3 43
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Insect toxins
50c1lmrA_
not modelled 8.3 43
PDB header:toxin
Chain: A: PDB Molecule:toxin ado1;
PDBTitle: solution of ado1, a toxin from the assassin bugs2 agriosphodrus dohrni that blocks the voltage sensitive3 calcium channel l-type
51c3bz5A_
not modelled 7.3 35
PDB header:cell adhesion
Chain: A: PDB Molecule:internalin-j;
PDBTitle: functional domain of inlj from listeria monocytogenes includes a2 cysteine ladder
52d1n1ua_
not modelled 6.8 100
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
53c1n1uA_
not modelled 6.8 100
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
54d1g3nc2
not modelled 6.6 67
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
55c1orxA_
not modelled 6.6 100
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
56c4ntqB_
not modelled 6.4 38
PDB header:toxin
Chain: B: PDB Molecule:ecl cdii;
PDBTitle: cdia-ct/cdii toxin and immunity complex from enterobacter cloacae
57c2f2iA_
not modelled 6.3 100
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
58c4ttnA_
not modelled 6.3 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
59c1nb1A_
not modelled 6.3 100
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
60d1nb1a_
not modelled 6.3 100
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
61c2mn1A_
not modelled 6.2 100
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
62c1k48A_
not modelled 6.2 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
63c1jjzA_
not modelled 6.2 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
64c2f2jA_
not modelled 6.2 100
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
65c4ttoA_
not modelled 6.2 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
66c4ttmA_
not modelled 6.2 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
67d1pt4a_
not modelled 6.2 100
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
68c4q96C_
not modelled 6.1 75
PDB header:protein binding
Chain: C: PDB Molecule:rpb1-ctd;
PDBTitle: cid of human rprd1b in complex with an unmodified ctd peptide
69c4q96F_
not modelled 6.1 75
PDB header:protein binding
Chain: F: PDB Molecule:rpb1-ctd;
PDBTitle: cid of human rprd1b in complex with an unmodified ctd peptide
70c2khbA_
not modelled 6.1 100
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
71d1dx5i3
not modelled 5.8 38
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
72d1sqwa2
not modelled 5.8 42
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Nip7p homolog, N-terminal domain
73c2ivfC_
not modelled 5.7 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:ethylbenzene dehydrogenase gamma-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
74c2xu6B_
not modelled 5.7 27
PDB header:protein binding
Chain: B: PDB Molecule:mdv1 coiled coil;
PDBTitle: mdv1 coiled coil domain
75c1wz5A_
not modelled 5.7 63
PDB header:toxin
Chain: A: PDB Molecule:potassium channel blocking toxin 1;
PDBTitle: solution structure of pi1-3p
76c2rmzA_
not modelled 5.4 43
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
77d1e4ta_
not modelled 5.4 50
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
78c1kalA_
not modelled 5.4 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
79c2lurA_
not modelled 5.3 100
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
80d1eu1a2
not modelled 5.3 27
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
81c4uw8F_
not modelled 5.3 38
PDB header:viral protein
Chain: F: PDB Molecule:l-shaped tail fiber protein;
PDBTitle: structure of the carboxy-terminal domain of the bacteriophage t5 l-2 shaped tail fiber with its intra-molecular chaperone domain
82d1gmia_
not modelled 5.2 13
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
83c5a52A_
not modelled 5.1 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:calcium-dependent lipid-binding domain-containing protein;
PDBTitle: the crystal structure of arabidopsis thaliana car1 in2 complex with one calcium ion
84c2nq3A_
not modelled 5.1 21
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: crystal structure of the c2 domain of human itchy homolog2 e3 ubiquitin protein ligase
85d2nq3a1
not modelled 5.1 21
Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
86d3ci0k3
not modelled 5.1 27
Fold:Pili subunits
Superfamily:Pili subunits
Family:GspK pilin-like domain

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