Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2356c_(PPE40)_2637698_2639545
DateMon Aug 5 13:25:51 BST 2019
Unique Job ID43f6aab8cb29e0c2
SequenceVVNFSVLPPE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:62.092 Y:71.855 Z:71.508
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 28%
172 residues ( 28% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Warning: 70% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 53
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2d2g38b1
100.0 31
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
3c2g38B_
100.0 31
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
4c4xy3A_
100.0 18
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
99.3 17
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
98.2 11
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
98.0 10
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
98.0 19
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
98.0 16
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
97.6 16
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsA_
96.7 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsB_
96.6 13
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
96.5 17
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
95.8 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
94.3 20
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
91.9 28
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17d1ui5a2
75.3 30
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18c2ahmG_
38.9 22
PDB header:viral protein, replication
Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain;
PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
19c2iu1A_
37.4 39
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
20d1xkna_
36.5 14
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
21c3ub0D_
not modelled 31.0 12
PDB header:replication
Chain: D: PDB Molecule:non-structural protein 6, nsp6,;
PDBTitle: crystal structure of the nonstructural protein 7 and 8 complex of2 feline coronavirus
22c2fulE_
not modelled 28.8 33
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
23c2l5bA_
not modelled 26.4 53
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
24c5frgA_
not modelled 24.5 75
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
25c4wgiA_
not modelled 22.8 16
PDB header:apoptosis/inhibitor
Chain: A: PDB Molecule:maltose-binding periplasmic protein,induced myeloid
PDBTitle: a single diastereomer of a macrolactam core binds specifically to2 myeloid cell leukemia 1 (mcl1)
26c3fnbB_
not modelled 22.6 12
PDB header:hydrolase
Chain: B: PDB Molecule:acylaminoacyl peptidase smu_737;
PDBTitle: crystal structure of acylaminoacyl peptidase smu_737 from2 streptococcus mutans ua159
27c1paqA_
not modelled 22.4 15
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
28d1paqa_
not modelled 22.4 15
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
29c3h6pB_
not modelled 21.8 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
30c2kg7A_
not modelled 21.1 37
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
31c1bkvA_
not modelled 19.9 44
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
32c1bkvC_
not modelled 18.6 44
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
33c1bkvB_
not modelled 18.6 44
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
34c3juiA_
not modelled 17.5 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
35c2ke4A_
not modelled 16.8 75
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
36c4n91A_
not modelled 16.1 15
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with3 bound alpha/beta d-glucuronate
37c3jywF_
not modelled 15.9 54
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
38c3r5zB_
not modelled 15.6 9
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
39c3zfsA_
not modelled 13.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:f420-reducing hydrogenase, subunit alpha;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
40c4y9iA_
not modelled 13.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
41c2l5aA_
not modelled 12.6 19
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
42c2kp7A_
not modelled 12.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endonuclease mus81;
PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
43c5yysC_
not modelled 12.5 17
PDB header:transferase
Chain: C: PDB Molecule:l-fucokinase, l-fucose-1-p guanylyltransferase;
PDBTitle: cryo-em structure of l-fucokinase, gdp-fucose pyrophosphorylase (fkp)2 in bacteroides fragilis
44c4oo3A_
not modelled 12.4 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a putative oxidoreductase (parmer_00841) from2 parabacteroides merdae atcc 43184 at 2.23 a resolution
45c6epiC_
not modelled 12.4 13
PDB header:toxin
Chain: C: PDB Molecule:epsilon_1 antitoxin;
PDBTitle: structure of the epsilon_1 / zeta_1 antitoxin / toxin system from2 neisseria gonorrhoeae in complex with unam-4p.
46c4deyB_
not modelled 12.2 18
PDB header:transport protein
Chain: B: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: crystal structure of the voltage dependent calcium channel beta-22 subunit in complex with the cav1.2 i-ii linker.
47c3mveB_
not modelled 11.4 17
PDB header:lyase
Chain: B: PDB Molecule:upf0255 protein vv1_0328;
PDBTitle: crystal structure of a novel pyruvate decarboxylase
48c3j3bF_
not modelled 10.7 31
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the human 60s ribosomal proteins
49c3trhI_
not modelled 10.7 10
PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
50c5djsA_
not modelled 10.6 20
PDB header:transferase
Chain: A: PDB Molecule:tetratricopeptide tpr_2 repeat protein;
PDBTitle: thermobaculum terrenum o-glcnac transferase mutant - k341m
51c3j21Y_
not modelled 10.6 25
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l30p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
52c3h96B_
not modelled 10.3 6
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
53c3r5wO_
not modelled 10.1 15
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
54c2lyyB_
not modelled 9.8 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein nb7890a from shewanella sp
55c6hu9u_
not modelled 9.7 18
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
56c2kwuA_
not modelled 9.7 38
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
57c3j39F_
not modelled 9.6 38
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
58c4grdA_
not modelled 9.6 19
PDB header:lyase,isomerase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from burkholderia cenocepacia j2315
59c5hl8B_
not modelled 9.5 24
PDB header:protein transport
Chain: B: PDB Molecule:type ii secretion system protein l;
PDBTitle: 1.93 angstrom resolution crystal structure of a pullulanase-specific2 type ii secretion system integral cytoplasmic membrane protein gspl3 (c-terminal fragment; residues 309-397) from klebsiella pneumoniae4 subsp. pneumoniae ntuh-k2044
60c5lzkB_
not modelled 9.2 9
PDB header:structural genomics
Chain: B: PDB Molecule:protein fam83b;
PDBTitle: structure of the domain of unknown function duf1669 from human fam83b
61c3pe3D_
not modelled 9.2 18
PDB header:transferase
Chain: D: PDB Molecule:udp-n-acetylglucosamine--peptide n-
PDBTitle: structure of human o-glcnac transferase and its complex with a peptide2 substrate
62c3r5yC_
not modelled 9.1 15
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
63c4i6jB_
not modelled 8.9 22
PDB header:transcription
Chain: B: PDB Molecule:f-box/lrr-repeat protein 3;
PDBTitle: a ubiquitin ligase-substrate complex
64c4oanB_
not modelled 8.9 14
PDB header:membrane protein/protein transport
Chain: B: PDB Molecule:trap dicarboxylate transporter dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_2686), target efi-510221, with3 density modeled as (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-4 acetolactate)
65c2zzxD_
not modelled 8.7 14
PDB header:transport protein
Chain: D: PDB Molecule:abc transporter, solute-binding protein;
PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate
66c5vmoB_
not modelled 8.6 50
PDB header:viral protein/apoptosis
Chain: B: PDB Molecule:bcl-2 interacting mediator of cell death;
PDBTitle: crystal structure of grouper iridovirus giv66:bim complex
67d1vqow1
not modelled 8.5 19
Fold:Ribosomal protein L30p/L7e
Superfamily:Ribosomal protein L30p/L7e
Family:Ribosomal protein L30p/L7e
68c2xgvA_
not modelled 8.5 14
PDB header:viral protein
Chain: A: PDB Molecule:psiv capsid n-terminal domain;
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
69c3qthA_
not modelled 8.5 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a dinb-like protein (cps_3021) from colwellia2 psychrerythraea 34h at 2.20 a resolution
70c2vsnB_
not modelled 8.4 14
PDB header:transferase
Chain: B: PDB Molecule:xcogt;
PDBTitle: structure and topological arrangement of an o-glcnac2 transferase homolog: insight into molecular control of3 intracellular glycosylation
71c3n6xA_
not modelled 8.4 13
PDB header:ligase
Chain: A: PDB Molecule:putative glutathionylspermidine synthase;
PDBTitle: crystal structure of a putative glutathionylspermidine synthase2 (mfla_0391) from methylobacillus flagellatus kt at 2.35 a resolution
72d2fgga1
not modelled 8.4 40
Fold:dsRBD-like
Superfamily:Rv2632c-like
Family:Rv2632c-like
73c6ghrF_
not modelled 8.3 53
PDB header:photosynthesis
Chain: F: PDB Molecule:cp12 polypeptide;
PDBTitle: cyanobacterial gapdh with full-length cp12
74c5i4rA_
not modelled 8.3 43
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
75c3zf7w_
not modelled 8.2 25
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l23, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
76c3izce_
not modelled 8.2 19
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein rpl11 (l5p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
77c2i3fA_
not modelled 8.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycolipid transfer-like protein;
PDBTitle: crystal structure of a glycolipid transfer-like protein from galdieria2 sulphuraria
78c5ec0A_
not modelled 7.9 33
PDB header:structural protein
Chain: A: PDB Molecule:alp7a;
PDBTitle: crystal structure of actin-like protein alp7a
79c2wybA_
not modelled 7.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq subunit
PDBTitle: the quorum quenching n-acyl homoserine lactone acylase pvdq2 with a covalently bound dodecanoic acid
80d1luaa2
not modelled 7.7 29
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Methylene-tetrahydromethanopterin dehydrogenase
81c5kdiA_
not modelled 7.6 15
PDB header:lipid transport
Chain: A: PDB Molecule:pleckstrin homology domain-containing family a member 8;
PDBTitle: how fapp2 selects simple glycosphingolipids using the gltp-fold
82c4mnpA_
not modelled 7.6 14
PDB header:sugar binding protein
Chain: A: PDB Molecule:n-acetylneuraminate-binding protein;
PDBTitle: structure of the sialic acid binding protein from fusobacterium2 nucleatum subsp. nucleatum atcc 25586
83c4wpyA_
not modelled 7.6 20
PDB header:de novo protein
Chain: A: PDB Molecule:protein dl-rv1738;
PDBTitle: racemic crystal structure of rv1738 from mycobacterium tuberculosis2 (form-ii)
84c6ansD_
not modelled 7.5 16
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia cenocepacia
85c1gk9A_
not modelled 7.4 16
PDB header:antibiotic resistance
Chain: A: PDB Molecule:penicillin g acylase alpha subunit;
PDBTitle: crystal structures of penicillin acylase enzyme-substrate2 complexes: structural insights into the catalytic mechanism
86c1d0rA_
not modelled 7.1 40
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water
87d2apla1
not modelled 7.1 10
Fold:PG0816-like
Superfamily:PG0816-like
Family:PG0816-like
88c2hueB_
not modelled 7.0 23
PDB header:dna binding protein
Chain: B: PDB Molecule:histone h3;
PDBTitle: structure of the h3-h4 chaperone asf1 bound to histones h3 and h4
89d1kx5a_
not modelled 6.9 23
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
90c2vh3B_
not modelled 6.9 44
PDB header:unknown function
Chain: B: PDB Molecule:ranasmurfin;
PDBTitle: ranasmurfin
91c6e0cA_
not modelled 6.8 29
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: cryo-em structure of the cenp-a nucleosome (w601) in complex with a2 single chain antibody fragment
92c1jrjA_
not modelled 6.7 27
PDB header:hormone/growth factor
Chain: A: PDB Molecule:exendin-4;
PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
93c6bc8B_
not modelled 6.7 22
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of rev7-r124a/rev3-rbm2 (residues 1988-2014) complex
94c6bcdB_
not modelled 6.7 22
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of rev7-k44a/r124a/a135d in complex with rev3-rbm22 (residues 1988-2014)
95c6ekmB_
not modelled 6.7 22
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of mammalian rev7 in complex with human rev3 second2 binding site
96c6bi7D_
not modelled 6.7 22
PDB header:replication
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of rev7-wt/rev3 as a monomer under high-salt2 conditions
97c3a9rA_
not modelled 6.7 19
PDB header:isomerase
Chain: A: PDB Molecule:d-arabinose isomerase;
PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
98c6o9l6_
not modelled 6.7 40
PDB header:transcription/dna
Chain: 6: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the closed state
99c4gyxC_
not modelled 6.5 54
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot

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Transmembrane helix prediction 

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