Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2362c_(recO)_2643471_2644268
DateMon Aug 5 13:25:51 BST 2019
Unique Job ID012a79b58871ce07
SequenceMRLYRDRAVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.622 Y:70.063 Z:60.080
Model (left) based on template c1u5kA_
Top template information
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
Confidence and coverage
Confidence:100.0% Coverage: 89%
236 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1u5kA_
100.0 22
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
2c3q8dB_
100.0 20
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein reco;
PDBTitle: e. coli reco complex with ssb c-terminus
3d1u5ka2
100.0 20
Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
4d1u5ka1
98.3 34
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecO N-terminal domain-like
5c5fz5M_
93.2 16
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
6c2crwA_
89.4 17
PDB header:signaling protein
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating
PDBTitle: solution structure of the arfgap domain of adp-ribosylation2 factor gtpaseactivating protein 3 (arfgap 3)
7c2d9lA_
88.3 19
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
8c2p57A_
88.0 17
PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
9c2owaB_
87.9 14
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
10c3dwdB_
87.6 12
PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1
11d1dcqa2
87.4 14
Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:Pyk2-associated protein beta ARF-GAP domain
12c3o47A_
87.4 12
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
13c2iqjB_
87.2 17
PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744) stromal2 membrane-associated protein 1-like
14c3k1fM_
87.1 31
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
15c3lvrE_
84.9 14
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
16c3fehA_
84.2 24
PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1
17c2crrA_
83.6 17
PDB header:protein transport
Chain: A: PDB Molecule:stromal membrane-associated protein smap1b;
PDBTitle: solution structure of arfgap domain from human smap1
18d1ibia2
81.8 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
19c1dcqA_
81.6 18
PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats of2 papbeta.
20c2b0oF_
81.4 18
PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
21c3jueA_
not modelled 80.1 21
PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
22c4v1oM_
not modelled 78.6 30
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
23c3t9kA_
not modelled 77.9 17
PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide
24c6cnbR_
not modelled 76.5 16
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
25c3k7aM_
not modelled 70.9 30
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
26c5iy9Q_
not modelled 69.7 24
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
27c1x68A_
not modelled 69.4 17
PDB header:protein binding
Chain: A: PDB Molecule:fhl5 protein;
PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
28c5iy9M_
not modelled 68.1 16
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
29d1x4la2
not modelled 61.8 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
30c2gb5B_
not modelled 61.8 16
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
31d1hk8a_
not modelled 61.6 18
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
32c1hk8A_
not modelled 61.6 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
33c1x64A_
not modelled 61.2 20
PDB header:contractile protein
Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein;
PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein
34c5fmfR_
not modelled 61.1 18
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
35d2dara1
not modelled 60.5 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
36c6f42V_
not modelled 58.9 27
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
37c6o9lQ_
not modelled 58.8 25
PDB header:transcription/dna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the closed state
38c5fywW_
not modelled 57.8 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
39c1x63A_
not modelled 55.7 19
PDB header:contractile protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 1;
PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1
40c1wyhA_
not modelled 55.6 31
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 2;
PDBTitle: solution structure of the lim domain from human skeletal2 muscle lim-protein 2
41c3f6qB_
not modelled 55.4 31
PDB header:signaling protein/signaling protein
Chain: B: PDB Molecule:lim and senescent cell antigen-like-containing
PDBTitle: crystal structure of integrin-linked kinase ankyrin repeat2 domain in complex with pinch1 lim1 domain
42c1x4lA_
not modelled 55.1 20
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 3;
PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2
43d1x68a2
not modelled 54.9 18
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
44c3vrhA_
not modelled 54.4 20
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein ph0300;
PDBTitle: crystal structure of ph0300
45c5oqmW_
not modelled 54.2 18
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
46c6gymW_
not modelled 53.8 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
47d1pfta_
not modelled 53.3 29
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
48c3d00A_
not modelled 53.1 24
PDB header:metal binding protein
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e;
PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
49c3dzuD_
not modelled 52.7 23
PDB header:transcription/dna
Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma;
PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide
50c2gviA_
not modelled 52.5 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution
51c5oqjW_
not modelled 52.4 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
52d1xpaa2
not modelled 52.0 17
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
53d2cupa2
not modelled 51.3 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
54c3izci_
not modelled 51.0 37
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein rpl10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
55d1wfla_
not modelled 50.5 19
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
56c1d4uA_
not modelled 50.4 15
PDB header:dna binding protein
Chain: A: PDB Molecule:nucleotide excision repair protein xpa (xpa-mbd);
PDBTitle: interactions of human nucleotide excision repair protein2 xpa with rpa70 and dna: chemical shift mapping and 15n nmr3 relaxation studies
57c2eheA_
not modelled 49.5 17
PDB header:structural protein
Chain: A: PDB Molecule:four and a half lim domains 3;
PDBTitle: solution structure of the first lim domain from human four2 and a half lim domains protein 3
58c2darA_
not modelled 49.3 28
PDB header:metal binding protein
Chain: A: PDB Molecule:pdz and lim domain protein 5;
PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein
59c4nqaI_
not modelled 49.2 14
PDB header:transcription regulator/dna
Chain: I: PDB Molecule:liver x nuclear receptor beta;
PDBTitle: crystal structure of liganded hrxr-alpha/hlxr-beta heterodimer on dna
60c5uanA_
not modelled 49.1 27
PDB header:transcription/dna
Chain: A: PDB Molecule:retinoic acid receptor rxr-alpha;
PDBTitle: crystal structure of multi-domain rar-beta-rxr-alpha heterodimer on2 dna
61d1dl6a_
not modelled 48.9 17
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
62c2o10A_
not modelled 48.9 15
PDB header:metal binding protein
Chain: A: PDB Molecule:muscle lim protein;
PDBTitle: solution structure of the n-terminal lim domain of mlp/crp3
63c1ibiA_
not modelled 48.6 23
PDB header:metal binding protein
Chain: A: PDB Molecule:cysteine-rich protein 2;
PDBTitle: quail cysteine and glycine-rich protein, nmr, 15 minimized2 model structures
64c2d8xA_
not modelled 48.2 25
PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:protein pinch;
PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch)
65c2cuqA_
not modelled 47.8 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:four and a half lim domains 3;
PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2
66c2egqA_
not modelled 47.4 19
PDB header:structural protein
Chain: A: PDB Molecule:fhl1 protein;
PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1
67c1x3hA_
not modelled 47.2 25
PDB header:metal binding protein
Chain: A: PDB Molecule:leupaxin;
PDBTitle: solution structure of the lim domain of human leupaxin
68c3iz5i_
not modelled 46.5 10
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l10 (l10e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
69c2curA_
not modelled 46.4 19
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 1;
PDBTitle: solution structure of skeletal muscle lim-protein 1
70d1wfpa_
not modelled 46.4 22
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
71c2mbvA_
not modelled 46.4 34
PDB header:transcription
Chain: A: PDB Molecule:fusion protein of lim domain transcription factor lmo4 (77-
PDBTitle: lmo4-lim2 in complex with deaf1 (404-418)
72c3j39g_
not modelled 46.3 23
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
73d3gata_
not modelled 45.1 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
74c5uanB_
not modelled 44.8 27
PDB header:transcription/dna
Chain: B: PDB Molecule:retinoic acid receptor beta;
PDBTitle: crystal structure of multi-domain rar-beta-rxr-alpha heterodimer on2 dna
75d1wffa_
not modelled 44.7 22
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
76c1x4kA_
not modelled 44.7 25
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 3;
PDBTitle: solution structure of lim domain in lim-protein 3
77c3dzyA_
not modelled 44.6 27
PDB header:transcription/dna
Chain: A: PDB Molecule:retinoic acid receptor rxr-alpha;
PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide
78c4iqrE_
not modelled 43.9 32
PDB header:transcription/dna
Chain: E: PDB Molecule:hepatocyte nuclear factor 4-alpha;
PDBTitle: multi-domain organization of the hnf4alpha nuclear receptor complex on2 dna
79c3j3bg_
not modelled 43.6 40
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
80d1wg2a_
not modelled 43.5 17
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
81d2vuti1
not modelled 43.4 26
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
82c2d8zA_
not modelled 42.2 19
PDB header:signaling protein, structural protein
Chain: A: PDB Molecule:four and a half lim domains 2;
PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2)
83c1a7iA_
not modelled 42.1 16
PDB header:lim domain containing proteins
Chain: A: PDB Molecule:qcrp2 (lim1);
PDBTitle: amino-terminal lim domain from quail cysteine and glycine-2 rich protein, nmr, minimized average structure
84d1y0ja1
not modelled 42.1 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
85d5gata_
not modelled 42.1 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
86c1x61A_
not modelled 41.1 16
PDB header:cell adhesion
Chain: A: PDB Molecule:thyroid receptor interacting protein 6;
PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6)
87d1wfha_
not modelled 40.8 17
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
88d2ds5a1
not modelled 40.4 18
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:ClpX chaperone zinc binding domain
89c1nypA_
not modelled 40.1 22
PDB header:cell adhesion
Chain: A: PDB Molecule:pinch protein;
PDBTitle: 4th lim domain of pinch protein
90d1b8ta2
not modelled 40.0 16
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
91c1ovxB_
not modelled 40.0 18
PDB header:metal binding protein
Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx;
PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer
92d1wyha1
not modelled 38.7 32
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
93d1b8ta4
not modelled 38.5 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
94c2ds8A_
not modelled 38.0 15
PDB header:metal binding protein, protein binding
Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit
PDBTitle: structure of the zbd-xb complex
95d1gnfa_
not modelled 37.4 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
96c2l3kA_
not modelled 37.1 16
PDB header:oncoprotein
Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1;
PDBTitle: solution structure of lmo2(lim2)-ldb1(lid)
97c1x6aA_
not modelled 36.5 16
PDB header:protein binding
Chain: A: PDB Molecule:lim domain kinase 2;
PDBTitle: solution structures of the second lim domain of human lim-2 kinase 2 (limk2)
98c2o13A_
not modelled 36.5 22
PDB header:metal binding protein
Chain: A: PDB Molecule:muscle lim protein;
PDBTitle: solution structure of the c-terminal lim domain of mlp/crp3
99d1vd4a_
not modelled 36.4 25
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
100d1hraa_
not modelled 35.9 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
101d1hcqa_
not modelled 35.9 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
102c4u3eA_
not modelled 35.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
103c2co8A_
not modelled 35.4 17
PDB header:metal binding protein
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains
104c2miuA_
not modelled 34.8 13
PDB header:protein binding
Chain: A: PDB Molecule:four and a half lim domains protein 2;
PDBTitle: structure of fhl2 lim adaptor and its interaction with ski
105d1kb6b_
not modelled 34.7 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
106c2jtnA_
not modelled 34.5 13
PDB header:protein binding/transcription
Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox
PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex
107d2fiya1
not modelled 34.4 18
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
108c1ee8A_
not modelled 34.4 26
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
109c2cu8A_
not modelled 34.3 23
PDB header:metal binding protein
Chain: A: PDB Molecule:cysteine-rich protein 2;
PDBTitle: solution structure of the lim domain of human cysteine-rich2 protein 2
110d2cura1
not modelled 34.3 20
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
111c2d8yA_
not modelled 34.2 13
PDB header:structural protein
Chain: A: PDB Molecule:eplin protein;
PDBTitle: solution structure of the lim domain of epithelial protein2 lost in neoplasm
112c3j21d_
not modelled 34.0 24
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l4p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
113c2corA_
not modelled 33.6 26
PDB header:structural protein
Chain: A: PDB Molecule:pinch protein;
PDBTitle: solution structure of the third lim domain of particularly2 interesting new cys-his protein
114c1x62A_
not modelled 33.0 16
PDB header:structural protein
Chain: A: PDB Molecule:c-terminal lim domain protein 1;
PDBTitle: solution structure of the lim domain of carboxyl terminal2 lim domain protein 1
115c5ghaC_
not modelled 33.0 17
PDB header:transferase/transport protein
Chain: C: PDB Molecule:sulfur transferase ttua;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
116c4v195_
not modelled 32.8 18
PDB header:ribosome
Chain: 5: PDB Molecule:mitoribosomal protein bl32m, mrpl32;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
117d2nllb_
not modelled 32.7 19
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
118d1kb2a_
not modelled 32.5 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor
119c2lzuA_
not modelled 32.4 16
PDB header:metal binding protein
Chain: A: PDB Molecule:lim domain-containing protein 2;
PDBTitle: solution structure of limd2
120d1glua_
not modelled 31.8 19
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Nuclear receptor

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below