Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2365c_(-)_2646757_2647098
DateMon Aug 5 13:25:52 BST 2019
Unique Job IDfb97549603df3ca7
SequenceMMRRPITLAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.650 Y:36.228 Z:30.322
Model (left) based on template d2fr5a1
Top template information
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
Confidence and coverage
Confidence:100.0% Coverage: 88%
100 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2fr5a1
100.0 22
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
2d2z3ga1
100.0 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
3d1mq0a_
100.0 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
4c3oj6C_
100.0 25
PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
5d1uwza_
100.0 27
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
6c3b8fB_
100.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
7d2d30a1
100.0 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
8c3dmoD_
100.0 26
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from burkholderia2 pseudomallei
9c3r2nC_
100.0 26
PDB header:hydrolase
Chain: C: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
10d1r5ta_
100.0 13
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
11c3ijfX_
100.0 29
PDB header:hydrolase
Chain: X: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis
12c4eg2G_
100.0 27
PDB header:hydrolase
Chain: G: PDB Molecule:cytidine deaminase;
PDBTitle: 2.2 angstrom crystal structure of cytidine deaminase from vibrio2 cholerae in complex with zinc and uridine
13c1alnA_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
14d1alna1
99.9 26
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
15d1alna2
99.9 24
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
16c4p9eA_
98.4 11
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form
17d1p6oa_
98.0 12
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
18c5xkrA_
97.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:cmp/dcmp deaminase, zinc-binding protein;
PDBTitle: crystal structure of msmeg3575 in complex with benzoguanamine
19c2hvwC_
97.9 10
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from streptococcus mutans
20c2w4lC_
97.8 14
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase
21c5jfyC_
not modelled 97.7 9
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidine deaminase;
PDBTitle: crystal structure of a plant cytidine deaminase
22d2b3ja1
not modelled 97.6 14
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
23d2g84a1
not modelled 97.4 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
24c2hxvA_
not modelled 97.4 24
PDB header:biosynthetic protein
Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-
PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution
25d1z3aa1
not modelled 97.3 13
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
26d1wkqa_
not modelled 97.3 12
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
27c3ocqA_
not modelled 97.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytosine/adenosine deaminase;
PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica
28d1wwra1
not modelled 97.1 15
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
29c2o7pA_
not modelled 97.1 15
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
30c2nx8A_
not modelled 97.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
31d1vq2a_
not modelled 97.0 15
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
32d2a8na1
not modelled 97.0 15
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
33c2d5nB_
not modelled 95.8 24
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
34d2b3za2
not modelled 95.6 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
35c3dh1D_
not modelled 95.2 14
PDB header:hydrolase
Chain: D: PDB Molecule:trna-specific adenosine deaminase 2;
PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2
36c3zpgA_
not modelled 95.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:ribd;
PDBTitle: acinetobacter baumannii ribd, form 2
37d2hxva2
not modelled 94.9 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
38d1l5ja3
not modelled 39.6 9
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
39c4uwqK_
not modelled 33.5 17
PDB header:hydrolase
Chain: K: PDB Molecule:soxy protein;
PDBTitle: crystal structure of the disulfide-linked complex of the2 thiosulfodyrolase soxb with the carrier-protein soxyz from3 thermus thermophilus
40c3dmlA_
not modelled 32.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the periplasmic thioredoxin soxs from paracoccus2 pantotrophus (reduced form)
41c2zkqn_
not modelled 30.8 17
PDB header:ribosomal protein/rna
Chain: N: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
42c1l5jB_
not modelled 30.8 9
PDB header:lyase
Chain: B: PDB Molecule:aconitate hydratase 2;
PDBTitle: crystal structure of e. coli aconitase b.
43c5xyid_
not modelled 29.3 25
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s3, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
44c3c4nB_
not modelled 21.1 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein dr_0571;
PDBTitle: crystal structure of dr_0571 protein from deinococcus radiodurans in2 complex with adp. northeast structural genomics consortium target3 drr125
45d1njra_
not modelled 20.1 11
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
46c3g9bA_
not modelled 20.0 9
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide-protein
PDBTitle: crystal structure of reduced ost6l
47d3d37a2
not modelled 18.9 0
Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
48d1hyua4
not modelled 18.5 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:PDI-like
49c3zey8_
not modelled 18.1 25
PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
50c2xznN_
not modelled 17.8 33
PDB header:ribosome
Chain: N: PDB Molecule:rps29e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
51c3j20P_
not modelled 17.5 33
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
52c2oxgD_
not modelled 17.5 22
PDB header:transport protein
Chain: D: PDB Molecule:soxy protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
53d1b4ub_
not modelled 17.0 14
Fold:Phosphorylase/hydrolase-like
Superfamily:LigB-like
Family:LigB-like
54c3jyvN_
not modelled 16.7 25
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
55c5cb9A_
not modelled 15.7 29
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance protein/dioxygenase;
PDBTitle: crystal structure of c-as lyase with mercaptoethonal
56d1liua3
not modelled 15.5 20
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
57c3wrbB_
not modelled 15.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:gallate dioxygenase;
PDBTitle: crystal structure of the anaerobic h124f desb-gallate complex
58c5xxud_
not modelled 15.1 25
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein us3;
PDBTitle: small subunit of toxoplasma gondii ribosome
59d1booa_
not modelled 14.2 5
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Type II DNA methylase
60c1oatB_
not modelled 14.2 17
PDB header:aminotransferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: ornithine aminotransferase
61c3bh1A_
not modelled 13.3 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0371 protein dip2346;
PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae
62c6az1S_
not modelled 12.9 25
PDB header:ribosome/antibiotic
Chain: S: PDB Molecule:ribosomal protein s14;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
63d1e0ta3
not modelled 12.8 26
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
64d2g50a3
not modelled 12.6 24
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
65d3bzka5
not modelled 12.5 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
66d1pkla3
not modelled 12.3 17
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
67c1s1hN_
not modelled 11.8 27
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29-b;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
68c6h9cD_
not modelled 11.6 59
PDB header:virus
Chain: D: PDB Molecule:vp7;
PDBTitle: cryo-em structure of archaeal extremophilic internal membrane-2 containing haloarcula californiae icosahedral virus 1 (hciv-1) at3 3.74 angstroms resolution.
69c4pv3D_
not modelled 11.6 14
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
70d1siqa2
not modelled 11.4 22
Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
71c6ib5B_
not modelled 11.4 24
PDB header:flavoprotein
Chain: B: PDB Molecule:tryptophan 6-halogenase;
PDBTitle: mutant of flavin-dependent tryptophan halogenase thal with altered2 regioselectivity (thal-rebh5)
72c6bwsA_
not modelled 11.3 22
PDB header:unknown function
Chain: A: PDB Molecule:glycolate utilization protein;
PDBTitle: crystal structure of efga from methylobacterium extorquens
73d1gawa1
not modelled 10.6 19
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
74c5n1tA_
not modelled 10.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-binding subunit of sulfide dehydrogenase;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
75c3vowB_
not modelled 10.4 15
PDB header:hydrolase
Chain: B: PDB Molecule:probable dna dc->du-editing enzyme apobec-3c;
PDBTitle: crystal structure of the human apobec3c having hiv-1 vif-binding2 interface
76d1fnda1
not modelled 10.2 19
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
77c2mzzA_
not modelled 10.2 6
PDB header:hydrolase, antiviral protein
Chain: A: PDB Molecule:apolipoprotein b mrna-editing enzyme, catalytic
PDBTitle: nmr structure of apobec3g ntd variant, sntd
78c1senA_
not modelled 9.8 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thioredoxin-like protein p19;
PDBTitle: endoplasmic reticulum protein rp19 o95881
79d1sena_
not modelled 9.8 21
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
80c4yodA_
not modelled 9.1 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-like protein;
PDBTitle: crystal structure of a thioredoxin-like protein (baccac_02376) from2 bacteroides caccae atcc 43185 at 1.90 a resolution
81c4ml1D_
not modelled 9.1 5
PDB header:isomerase
Chain: D: PDB Molecule:dsbp;
PDBTitle: disulfide isomerase (dsbp) from multidrug resistance inca/c2 transferable plasmid in oxidized state (p212121 space group)
82c2e7uA_
not modelled 8.4 26
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from2 thermus thermophilus hb8
83c4e6kI_
not modelled 8.3 11
PDB header:metal binding protein/electron transport
Chain: I: PDB Molecule:bacterioferritin-associated ferredoxin;
PDBTitle: 2.0 a resolution structure of pseudomonas aeruginosa bacterioferritin2 (bfrb) in complex with bacterioferritin associated ferredoxin (bfd)
84c3g12A_
not modelled 8.3 36
PDB header:lyase
Chain: A: PDB Molecule:putative lactoylglutathione lyase;
PDBTitle: crystal structure of a putative lactoylglutathione lyase from2 bdellovibrio bacteriovorus
85c2fgxA_
not modelled 8.2 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thioredoxin;
PDBTitle: solution nmr structure of protein ne2328 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net3.
86c4kp1A_
not modelled 8.2 18
PDB header:isomerase
Chain: A: PDB Molecule:isopropylmalate/citramalate isomerase large subunit;
PDBTitle: crystal structure of ipm isomerase large subunit from methanococcus2 jannaschii (mj0499)
87c4mubA_
not modelled 8.1 14
PDB header:transferase
Chain: A: PDB Molecule:sulfotransferase;
PDBTitle: schistosoma mansoni (blood fluke) sulfotransferase/oxamniquine complex
88c1yspA_
not modelled 7.9 14
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr.
89c3ruyB_
not modelled 7.8 15
PDB header:transferase
Chain: B: PDB Molecule:ornithine aminotransferase;
PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis
90d1a3xa3
not modelled 7.8 22
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
91c4z04A_
not modelled 7.7 27
PDB header:lyase
Chain: A: PDB Molecule:glyoxalase/bleomycin resistance /dioxygenase superfamily
PDBTitle: crystal structure of a probable lactoylglutathione lyase from brucella2 melitensis in complex with glutathione
92c3fosA_
not modelled 7.7 23
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of two-component sensor histidine kinase domain from2 bacillus subtilis subsp. subtilis str. 168
93c4m90A_
not modelled 7.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:tumor suppressor candidate 3;
PDBTitle: crystal structure of oxidized hn33/tusc3
94d2bmwa1
not modelled 7.6 15
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
95d1g5ca_
not modelled 7.5 9
Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
96c2k8vA_
not modelled 7.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin domain-containing protein 12;
PDBTitle: solution structure of oxidised erp18
97c5k83C_
not modelled 7.3 9
PDB header:hydrolase
Chain: C: PDB Molecule:apolipoprotein b mrna editing enzyme, catalytic peptide-
PDBTitle: crystal structure of a primate apobec3g n-domain, in complex with2 ssdna
98c4e6kG_
not modelled 7.3 11
PDB header:metal binding protein/electron transport
Chain: G: PDB Molecule:bacterioferritin-associated ferredoxin;
PDBTitle: 2.0 a resolution structure of pseudomonas aeruginosa bacterioferritin2 (bfrb) in complex with bacterioferritin associated ferredoxin (bfd)
99d2f9wa1
not modelled 7.2 19
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like

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