Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2367c_(-)_2648374_2648922
DateMon Aug 5 13:25:52 BST 2019
Unique Job IDe599b960295ce412
SequenceVREHLMSIEV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.279 Y:41.427 Z:52.249
Model (left) based on template d1xm5a_
Top template information
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
Confidence and coverage
Confidence:100.0% Coverage: 80%
146 residues ( 80% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1xm5a_
100.0 32
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
2d1oz9a_
100.0 34
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
3c1xaxA_
100.0 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004;
PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae
4d1tvia_
100.0 31
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
5c2xhqA_
57.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution
6c1u9pA_
57.7 14
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
7d1lmla_
57.5 17
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Leishmanolysin
8c2x7mA_
55.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution
9c3vtgA_
51.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:high choriolytic enzyme 1;
PDBTitle: high choriolytic enzyme 1 (hce-1), a hatching enzyme zinc-protease2 from oryzias latipes (medaka fish)
10c5czwA_
40.8 37
PDB header:hydrolase
Chain: A: PDB Molecule:myroilysin;
PDBTitle: crystal structure of myroilysin
11c5th6D_
38.8 26
PDB header:hydrolase/hydrolase inhibitor
Chain: D: PDB Molecule:matrix metalloproteinase-9,matrix metalloproteinase-9;
PDBTitle: structure determination of a potent, selective antibody inhibitor of2 human mmp9 (apo mmp9)
12d1hv5a_
38.1 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
13c4q66J_
37.7 21
PDB header:protein transport
Chain: J: PDB Molecule:chs5p;
PDBTitle: structure of exomer bound to arf1.
14d1asta_
37.4 36
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Astacin
15c3edhA_
37.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:bone morphogenetic protein 1;
PDBTitle: crystal structure of bone morphogenetic protein 1 protease2 domain in complex with partially bound dmso
16d2ovxa1
36.8 40
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
17d1y93a1
36.8 35
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
18c3lqbA_
35.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:loc792177 protein;
PDBTitle: crystal structure of the hatching enzyme zhe1 from the zebrafish danio2 rerio
19c4gwnA_
34.1 43
PDB header:hydrolase
Chain: A: PDB Molecule:meprin a subunit beta;
PDBTitle: crystal structure of human mature meprin beta
20d1hova_
33.3 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
21d1hfca_
not modelled 31.4 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
22c4gwmA_
not modelled 31.4 40
PDB header:hydrolase
Chain: A: PDB Molecule:meprin a subunit beta;
PDBTitle: crystal structure of human promeprin beta
23d1cgla_
not modelled 31.2 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
24d1fbla2
not modelled 31.2 32
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
25d1qiba_
not modelled 30.3 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
26c2jsdA_
not modelled 29.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-20;
PDBTitle: solution structure of mmp20 complexed with nngh
27d1i76a_
not modelled 28.8 35
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
28d1xuca1
not modelled 28.3 42
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
29c3lmcA_
not modelled 28.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase, zinc-dependent;
PDBTitle: crystal structure of zinc-dependent peptidase from methanocorpusculum2 labreanum (strain z), northeast structural genomics consortium target3 mur16
30d1q3aa_
not modelled 27.5 37
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
31c4yg8A_
not modelled 26.4 21
PDB header:transport protein
Chain: A: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-chs6 exomer cargo adaptor complex
32c4gnsA_
not modelled 26.4 21
PDB header:transport protein
Chain: A: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-chs6 exomer cargo adaptor complex
33d1rm8a_
not modelled 25.8 37
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
34c5zwoO_
not modelled 25.6 16
PDB header:splicing
Chain: O: PDB Molecule:66 kda u4/u6.u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of the yeast b complex at average resolution of 3.92 angstrom
35c2xs4A_
not modelled 25.4 35
PDB header:hydrolase
Chain: A: PDB Molecule:karilysin protease;
PDBTitle: structure of karilysin catalytic mmp domain in complex with magnesium
36c3lq0A_
not modelled 23.7 27
PDB header:hydrolase
Chain: A: PDB Molecule:proastacin;
PDBTitle: zymogen structure of crayfish astacin metallopeptidase
37d1cxva_
not modelled 23.2 37
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
38d1mmqa_
not modelled 22.9 25
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
39d1hy7a_
not modelled 19.0 35
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
40c1slmA_
not modelled 18.8 37
PDB header:hydrolase
Chain: A: PDB Molecule:stromelysin-1;
PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme
41c5mslA_
not modelled 18.5 36
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma-f factor fin;
PDBTitle: solution structure of the b. subtilis anti-sigma-f factor, fin
42d1k7ia2
not modelled 13.3 19
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
43c4g0dD_
not modelled 13.3 40
PDB header:hydrolase
Chain: D: PDB Molecule:collagenase 3;
PDBTitle: human collagenase 3 (mmp-13) full form with peptides from pro-domain
44c1jmtB_
not modelled 13.1 38
PDB header:rna binding protein
Chain: B: PDB Molecule:splicing factor u2af 65 kda subunit;
PDBTitle: x-ray structure of a core u2af65/u2af35 heterodimer
45d1wgna_
not modelled 12.8 19
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
46d1eaka2
not modelled 12.5 32
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
47d1qmya_
not modelled 11.5 44
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:FMDV leader protease
48d1qola_
not modelled 11.4 44
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:FMDV leader protease
49c2erpA_
not modelled 11.2 33
PDB header:toxin
Chain: A: PDB Molecule:vascular apoptosis-inducing protein 1;
PDBTitle: crystal structure of vascular apoptosis-inducing protein-1(inhibitor-2 bound form)
50c2zw2B_
not modelled 11.0 18
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein sts178;
PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs)
51d1sata2
not modelled 10.6 15
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
52c5fx8U_
not modelled 10.5 19
PDB header:oxidoreductase
Chain: U: PDB Molecule:zonadhesin;
PDBTitle: complete structure of manganese lipoxygenase of gaeumannomyces2 graminis and partial structure of zonadhesin of komagataella3 pastoris
53c2cltB_
not modelled 10.4 27
PDB header:hydrolase
Chain: B: PDB Molecule:interstitial collagenase;
PDBTitle: crystal structure of the active form (full-length) of human2 fibroblast collagenase.
54d2a6aa2
not modelled 10.2 18
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
55d1atla_
not modelled 10.2 25
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
56c3wwnB_
not modelled 9.9 31
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
57c2dw1B_
not modelled 9.4 30
PDB header:apoptosis, toxin
Chain: B: PDB Molecule:catrocollastatin;
PDBTitle: crystal structure of vap2 from crotalus atrox venom (form 2-2 crystal)
58c4cs7A_
not modelled 9.3 20
PDB header:viral protein
Chain: A: PDB Molecule:m2-1;
PDBTitle: crystal structure of the asymmetric human metapneumovirus2 m2-1 tetramer, form 1
59c1rm1C_
not modelled 9.2 23
PDB header:transcription/dna
Chain: C: PDB Molecule:transcription initiation factor iia large chain;
PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex
60d1jyma_
not modelled 8.8 21
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
61c2rjqA_
not modelled 8.8 33
PDB header:hydrolase
Chain: A: PDB Molecule:adamts-5;
PDBTitle: crystal structure of adamts5 with inhibitor bound
62c2mzeA_
not modelled 8.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:matrilysin;
PDBTitle: nmr solution structure of the pro form of human matrilysin (prommp-7)
63d1kufa_
not modelled 8.8 30
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
64c3bkdD_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: D: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
65c3bkdB_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: B: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
66c3bkdC_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: C: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
67c3bkdA_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: A: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
68c3bkdE_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: E: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
69c3bkdH_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: H: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
70c3bkdG_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: G: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
71c3bkdF_
not modelled 8.7 63
PDB header:viral protein, membrane protein
Chain: F: PDB Molecule:transmembrane domain of matrix protein m2;
PDBTitle: high resolution crystal structure of transmembrane domain of m22 protein
72d1bqqm_
not modelled 8.3 32
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Matrix metalloproteases, catalytic domain
73c3ipfA_
not modelled 7.9 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the q251q8_deshy protein from desulfitobacterium2 hafniense. northeast structural genomics consortium target dhr8c.
74d1r55a_
not modelled 7.9 29
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Reprolysin-like
75c2l0gA_
not modelled 7.7 55
PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
76c2khuA_
not modelled 7.4 55
PDB header:transferase/protein binding
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna
PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota
77c3e5aB_
not modelled 7.3 20
PDB header:transferase
Chain: B: PDB Molecule:targeting protein for xklp2;
PDBTitle: crystal structure of aurora a in complex with vx-680 and tpx2
78c2oq2B_
not modelled 7.0 5
PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine phosphosulfate reductase;
PDBTitle: crystal structure of yeast paps reductase with pap, a product complex
79d1fx0b1
not modelled 7.0 16
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
80c3c0tB_
not modelled 6.9 67
PDB header:transcription
Chain: B: PDB Molecule:mediator of rna polymerase ii transcription
PDBTitle: structure of the schizosaccharomyces pombe mediator2 subcomplex med8c/18
81c3gr1A_
not modelled 6.8 14
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-392)
82c5k2mF_
not modelled 6.7 46
PDB header:biosynthetic protein
Chain: F: PDB Molecule:probable lysine biosynthesis protein;
PDBTitle: bifunctional lysx/argx from thermococcus kodakarensis with lysw-gamma-2 aaa
83d2i47a1
not modelled 6.6 33
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TNF-alpha converting enzyme, TACE, catalytic domain
84c3b8zB_
not modelled 6.6 33
PDB header:hydrolase
Chain: B: PDB Molecule:protein adamts-5;
PDBTitle: high resolution crystal structure of the catalytic domain of adamts-52 (aggrecanase-2)
85c2kwuA_
not modelled 6.4 36
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
86c3ba0A_
not modelled 6.3 36
PDB header:hydrolase
Chain: A: PDB Molecule:macrophage metalloelastase;
PDBTitle: crystal structure of full-length human mmp-12
87d1t4aa_
not modelled 6.0 25
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
88c3viqC_
not modelled 5.7 27
PDB header:recombination activator
Chain: C: PDB Molecule:swi5-dependent recombination dna repair protein 1;
PDBTitle: crystal structure of swi5-sfr1 complex from fission yeast
89c4in3C_
not modelled 5.6 21
PDB header:protein transport
Chain: C: PDB Molecule:chitin biosynthesis protein chs5;
PDBTitle: crystal structure of the chs5-bch1 exomer cargo adaptor complex
90c4fipG_
not modelled 5.6 47
PDB header:hydrolase
Chain: G: PDB Molecule:saga-associated factor 11;
PDBTitle: structure of the saga ubp8(s144n)/sgf11(1-72, delta-znf)/sus1/sgf732 dub module
91c2v4bB_
not modelled 5.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:adamts-1;
PDBTitle: crystal structure of human adamts-1 catalytic domain and cysteine-2 rich domain (apo-form)
92c1dowB_
not modelled 5.5 24
PDB header:cell adhesion
Chain: B: PDB Molecule:beta-catenin;
PDBTitle: crystal structure of a chimera of beta-catenin and alpha-2 catenin
93c2dgbA_
not modelled 5.5 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein purs;
PDBTitle: structure of thermus thermophilus purs in the p21 form
94c1l6jA_
not modelled 5.3 39
PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-9;
PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b).
95c3k7lA_
not modelled 5.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:atragin;
PDBTitle: structures of two elapid snake venom metalloproteases with2 distinct activities highlight the disulfide patterns in the3 d domain of adamalysin family proteins
96d3e11a1
not modelled 5.2 25
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TTHA0227-like

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